MELO3C031398 (gene) Melon (DHL92) v4

Overview
NameMELO3C031398
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionABC transporter B family member 19-like
Locationchr05: 13801102 .. 13803845 (-)
RNA-Seq ExpressionMELO3C031398
SyntenyMELO3C031398
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGGCGTCCATTTTTTCGTCTTCTCCGTCGCAGATCGTCGCAAGCCGCTGCGTCTCCTCCTTTGTTAGTCGTCGGCCGTCGTTCGAGTCACGACGGAGCTTCGCATTCGTCTGCTATTTTTCTACGATTTTCTGTCGATCCGTCGGCTGTCGAATCAATCCTTCGTCGATCCATCAGCTGCGAATCACTTGAATTGTGATTAAATATAATAATATTTAATAATATATTATGAAGACTTCAGTTGAGTTGGATCCGACCTCAACTTTGAGTAAGTTAAATCAACTTGAATTTTGAATCTTAAATTAACTGCAAATTAAGTTTTCATCTTAGTATTTTTATTCTTACTGTTTAGAATTTTCTTGAGAAGCTCGACTTTGCTGTTAGGAGTGTATTTCCATGAATTAAGCTAATCTCCAGGTAATAGATTCTCCTACTAGACCTTCGAATTGAAGTATGAGCTAGCATGTAACTTTTTCTATTATGCATTAATGTAGCTAATATGCATAGTGTGTTTATGGTTTATGATGATTGGTAGTCATGACTAGTCTATGCTTATGATGACTATTAGTTCTGACTGAGTTATGTTGATGATGACGATTGATGTTGATGTTATGCATGAATTATTAATCTCATGATTAAGAATGCTATTGTTAATATTCATGTCATGATTATGATGTTATATTATGCTACATGCTATGGATAGGTTGTATTGTTGGCTTTATCTATTAGAGTCGTATCCACATGGATGTCCCTCGAGATCACCACCTTTTATGACTATGTAGTCCGATGGGATCTCTAGTCCAACATGAGATGATATGTTACGAGTGAATCGATTGGGTCACTCACAACCCAATTGTCTTAGTGTTTCTTTCGAGGTTCACTAAAGACCAGTTTGTCCTAGGTGTTCCTTGTGTTCCCCGAAGATCAATTGTGTTCTAGATGTTCCTTTGGGTTCATTGAAGACTAGAGATGTTCCTACGGGATTACAGATTGCGCGTGTTTGGGAACGTGTCAGTTTAACGGTACCACTTTACAGAACTCTAATAGGAAGTTAATATACACCTAGCGGGGCTAGTAGTAGGTCCTTTACTGAGTATATTTTTATACTCATTCCTTTATGTTTAATTGTTTAGGCAGAGGTAGAGGTAAGAGTAGAGGAAAGCTTGCAAGTAACAAGAAGTGGCCATGACGTGTCATTGGGGAACACTTTTGCTTCCACCTTATGTTATTAGATTTTGATTTCAGTATTTATGCACTTTTATTTATTTTACTCTTTTAAAACTAGATAGGGCTCGAGCTAGGATCTTACTTATAGATTTATTTCTACTTACTTTAGCTTATTTATGATTTTAATGAATATTTGAGTTTTTAAATTAAGGAGTTTGTTATTTTCTTTTTGAATTTAAGAAAGTTTTATCATCTTTTAGGTAGTAATGACCTCAGCTTAGTATAAAGAGTTGGGTCGTTACACTACATCATTGCATTTTTTTTCCAGTATTATATAATATTGTCTTCTAAACTAAATCACATACTTAGAACTTAAGTGATAAATCTACGAATGACTAAATCACGTTATCTCATATGTTGTGTTAAAATAGATTGAGCTTTCATATAACATATACATATTCAGTAATGGACTTCTGATAACCTAAATTATTAGGCAAAAGTGAGCATTTGTAGTGGTCAAAGCGTAGATGCGCTTCAAAAAAGGTGCAATTGCGCTCAAGTCATGCTTTTGTAGTACATTTGTGCTAAAAAACAACGCTCATTAGGCTCGTGAATTGATCGTAAAGCGCAACTCCAGTGTCAGTTGTGCGCCTTCTGGTGTAATTTCTTTGATAGAGCTTCAATTGGTTGATTTTAGTTGTGTTAGCTCCGTAATACGACTCTATCTCTTTGATCGTTAATGCCTAAAAAATAACATATTTAAGCACATTTAATCGACTAATAATCTTAAATCAGGCTAAGAAACTAGCACTTTTATGATGCTAATAAATTGGAATAACTAAGAACCTGAAGATATTGTGGAGATCATGTGAATCTAGTCAAGACATGAAAGTGTTGTGTTAAATACAAATTATTTGCTTTAGATAGATTGTAAGAAAACTACAATAATCGTCTCAACATGATACAACGACTATAGTCTAATATTGGATTCTTCCGTTGAAGGATTACTTAGCATTTCTCGTGCGGTTTAATCAGATTAATTTTCTGTGATCAAATTCATGTAAGACTTCTACGCCCGTTGTTTGCATTATGTGTACTCATGTTGGATGGCTTGTTTAAAATGAAAATTCTAAGATTTGTAAAATAAAAGTTACCCGATTGAAAAGTTCTGTGTATGGAGATTTATAGTAGTTGCTACTAGGCCCAATATGATTGCATTGTAAAAGTTAGAATTGTAAGGATTAGATGTCCATTGACCAACTGTAGTGTTTGACATTTCTATGTTCAAGTGTACACTAAATTGAAGCATATTTTTTTAAGTTTTTATCTCAATTTGGCATCCCTTATTTATCTTTTAGTTTTACCTTAGCTTATTTTAAAAAGTTTCTTTGTGTGCTTTACTAGTTTTTATTCTTATAAGAAGGTGAAATATGCACGTATTTATTTAATGTTTATGTTTATGCTTATGCATTTTCTATAATGAATGTTAACTAAGGTTCATTTTCTTCAAATTTGCAGGTAATGAAGAATCCATGGATCATGGTATTGATCAAGTTCATTTATGCGTCAGTTTGA

mRNA sequence

ATGCGGCGTCCATTTTTTCGTCTTCTCCGTCGCAGATCGTCGCAAGCCGCTGCGTCTCCTCCTTTGTTAGTCGTCGGCCGTCGTTCGAGTCACGACGGAGCTTCGCATTCGTCTGCTATTTTTCTACGATTTTCTGTCGATCCGTCGGCTGTCGAATCAATCCTTCGTCGATCCATCAGCTGCGAATCACTTGAATTACCAGTTTGTCCTAGGTGTTCCTTGTGTTCCCCGAAGATCAATTGTGTTCTAGATGTTCCTTTGGGTTCATTGAAGACTAGAGATGTTCCTACGGGATTACAGATTGCGCGTGTTTGGGAACGTGTCAGTTTAACGGCAGAGGTAGAGGTAAGAGTAGAGGAAAGCTTGCAAGTAACAAGAAGTGGCCATGACGTGTCATTGGGGAACACTTTTGCTTCCACCTTATGTAGTAATGACCTCAGCTTAGTAATGAAGAATCCATGGATCATGGTATTGATCAAGTTCATTTATGCGTCAGTTTGA

Coding sequence (CDS)

ATGCGGCGTCCATTTTTTCGTCTTCTCCGTCGCAGATCGTCGCAAGCCGCTGCGTCTCCTCCTTTGTTAGTCGTCGGCCGTCGTTCGAGTCACGACGGAGCTTCGCATTCGTCTGCTATTTTTCTACGATTTTCTGTCGATCCGTCGGCTGTCGAATCAATCCTTCGTCGATCCATCAGCTGCGAATCACTTGAATTACCAGTTTGTCCTAGGTGTTCCTTGTGTTCCCCGAAGATCAATTGTGTTCTAGATGTTCCTTTGGGTTCATTGAAGACTAGAGATGTTCCTACGGGATTACAGATTGCGCGTGTTTGGGAACGTGTCAGTTTAACGGCAGAGGTAGAGGTAAGAGTAGAGGAAAGCTTGCAAGTAACAAGAAGTGGCCATGACGTGTCATTGGGGAACACTTTTGCTTCCACCTTATGTAGTAATGACCTCAGCTTAGTAATGAAGAATCCATGGATCATGGTATTGATCAAGTTCATTTATGCGTCAGTTTGA

Protein sequence

MRRPFFRLLRRRSSQAAASPPLLVVGRRSSHDGASHSSAIFLRFSVDPSAVESILRRSISCESLELPVCPRCSLCSPKINCVLDVPLGSLKTRDVPTGLQIARVWERVSLTAEVEVRVEESLQVTRSGHDVSLGNTFASTLCSNDLSLVMKNPWIMVLIKFIYASV
Homology
[Close]
BLAST of MELO3C031398 vs. NCBI nr
Match: KAA0066997.1 (hypothetical protein E6C27_scaffold38G00260 [Cucumis melo var. makuwa] >TYJ96806.1 hypothetical protein E5676_scaffold233G00250 [Cucumis melo var. makuwa])

HSP 1 Score: 73.6 bits (179), Expect = 1.9e-09
Identity = 43/66 (65.15%), Postives = 47/66 (71.21%), Query Frame = 0 

Query: 70  PRCSLCSP----KINCVLDVPLGSLKTRDVPTGLQIARVWERVSLTAEVEVRVEESLQVT 129
           PR S C P    K + VL VPLGS KTRDVPTG QIARV ER SL AEVEVR EES ++T
Sbjct: 12  PRLSECFPRDSLKTSFVLGVPLGSPKTRDVPTGSQIARVRERASLGAEVEVRAEESWRMT 71

Query: 130 RSGHDV 132
           RS  D+
Sbjct: 72  RSDRDI 77

[Close]
BLAST of MELO3C031398 vs. NCBI nr
Match: KAA0061424.1 (ABC transporter B family member 19-like [Cucumis melo var. makuwa])

HSP 1 Score: 71.6 bits (174), Expect = 7.0e-09
Identity = 37/56 (66.07%), Postives = 43/56 (76.79%), Query Frame = 0 

Query: 72  CSLCSPKINCVLDVPLGSLKTRDVPTGLQIARVWERVSLTAEVEVRVEESLQVTRS 128
           CSL SPK + V+ V L S KTRDVPTGLQIA VWER SL AEVE+R E S ++TR+
Sbjct: 244 CSLWSPKTSFVIGVSLSSPKTRDVPTGLQIAHVWERASLGAEVEIRAEASWRMTRT 299

[Close]
BLAST of MELO3C031398 vs. NCBI nr
Match: TYK04651.1 (ABC transporter B family member 19-like [Cucumis melo var. makuwa])

HSP 1 Score: 70.1 bits (170), Expect = 2.1e-08
Identity = 36/56 (64.29%), Postives = 42/56 (75.00%), Query Frame = 0 

Query: 72  CSLCSPKINCVLDVPLGSLKTRDVPTGLQIARVWERVSLTAEVEVRVEESLQVTRS 128
           CSL SPK + V+ V L S KTRDVPTGLQIA VWER SL  EVE+R E S ++TR+
Sbjct: 244 CSLWSPKTSFVIGVSLSSPKTRDVPTGLQIAHVWERASLGVEVEIRAEASWRMTRT 299

[Close]
BLAST of MELO3C031398 vs. NCBI nr
Match: KAA0039203.1 (hypothetical protein E6C27_scaffold121G001210 [Cucumis melo var. makuwa] >TYK18470.1 hypothetical protein E5676_scaffold607G00400 [Cucumis melo var. makuwa])

HSP 1 Score: 64.3 bits (155), Expect = 1.1e-06
Identity = 43/86 (50.00%), Postives = 49/86 (56.98%), Query Frame = 0 

Query: 42  LRFSVDPSAVESILRRSISCESLELPVCPRCSLCSPKINCVLDVPLGSLKTRDVPTGLQI 101
           +R      A ESIL R++       P C   S    K   VLDVPLGS KTRDVPTG QI
Sbjct: 26  VRVRATSPATESILTRAV----FAFPKCLSISPGYTKDQFVLDVPLGSPKTRDVPTGSQI 85

Query: 102 ARVWERVSLTAEVEVRVEESLQVTRS 128
            RV E  SL  EVEVR + S ++TRS
Sbjct: 86  TRVREHASLGVEVEVRAKGSWRLTRS 107

[Close]
BLAST of MELO3C031398 vs. NCBI nr
Match: KAA0063028.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 61.6 bits (148), Expect = 7.3e-06
Identity = 33/49 (67.35%), Postives = 36/49 (73.47%), Query Frame = 0 

Query: 83  LDVPLGSLKTRDVPTGLQIARVWERVSLTAEVEVRVEESLQVTRSGHDV 132
           L VPLGS KTRDV + LQI  VWER SL AEVEVR EES ++TRS   V
Sbjct: 884 LSVPLGSSKTRDVLSRLQIVHVWERTSLGAEVEVRAEESWRMTRSDRGV 932

[Close]
BLAST of MELO3C031398 vs. ExPASy TrEMBL
Match: A0A5D3BCW4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold233G00250 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 9.0e-10
Identity = 43/66 (65.15%), Postives = 47/66 (71.21%), Query Frame = 0 

Query: 70  PRCSLCSP----KINCVLDVPLGSLKTRDVPTGLQIARVWERVSLTAEVEVRVEESLQVT 129
           PR S C P    K + VL VPLGS KTRDVPTG QIARV ER SL AEVEVR EES ++T
Sbjct: 12  PRLSECFPRDSLKTSFVLGVPLGSPKTRDVPTGSQIARVRERASLGAEVEVRAEESWRMT 71

Query: 130 RSGHDV 132
           RS  D+
Sbjct: 72  RSDRDI 77

[Close]
BLAST of MELO3C031398 vs. ExPASy TrEMBL
Match: A0A5A7V2E7 (ABC transporter B family member 19-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1041G00010 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 3.4e-09
Identity = 37/56 (66.07%), Postives = 43/56 (76.79%), Query Frame = 0 

Query: 72  CSLCSPKINCVLDVPLGSLKTRDVPTGLQIARVWERVSLTAEVEVRVEESLQVTRS 128
           CSL SPK + V+ V L S KTRDVPTGLQIA VWER SL AEVE+R E S ++TR+
Sbjct: 244 CSLWSPKTSFVIGVSLSSPKTRDVPTGLQIAHVWERASLGAEVEIRAEASWRMTRT 299

[Close]
BLAST of MELO3C031398 vs. ExPASy TrEMBL
Match: A0A5D3BY90 (ABC transporter B family member 19-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1133G00030 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 9.9e-09
Identity = 36/56 (64.29%), Postives = 42/56 (75.00%), Query Frame = 0 

Query: 72  CSLCSPKINCVLDVPLGSLKTRDVPTGLQIARVWERVSLTAEVEVRVEESLQVTRS 128
           CSL SPK + V+ V L S KTRDVPTGLQIA VWER SL  EVE+R E S ++TR+
Sbjct: 244 CSLWSPKTSFVIGVSLSSPKTRDVPTGLQIAHVWERASLGVEVEIRAEASWRMTRT 299

[Close]
BLAST of MELO3C031398 vs. ExPASy TrEMBL
Match: A0A5D3D4L8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold607G00400 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 5.4e-07
Identity = 43/86 (50.00%), Postives = 49/86 (56.98%), Query Frame = 0 

Query: 42  LRFSVDPSAVESILRRSISCESLELPVCPRCSLCSPKINCVLDVPLGSLKTRDVPTGLQI 101
           +R      A ESIL R++       P C   S    K   VLDVPLGS KTRDVPTG QI
Sbjct: 26  VRVRATSPATESILTRAV----FAFPKCLSISPGYTKDQFVLDVPLGSPKTRDVPTGSQI 85

Query: 102 ARVWERVSLTAEVEVRVEESLQVTRS 128
            RV E  SL  EVEVR + S ++TRS
Sbjct: 86  TRVREHASLGVEVEVRAKGSWRLTRS 107

[Close]
BLAST of MELO3C031398 vs. ExPASy TrEMBL
Match: A0A5A7V5Y4 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G001350 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 3.5e-06
Identity = 33/49 (67.35%), Postives = 36/49 (73.47%), Query Frame = 0 

Query: 83  LDVPLGSLKTRDVPTGLQIARVWERVSLTAEVEVRVEESLQVTRSGHDV 132
           L VPLGS KTRDV + LQI  VWER SL AEVEVR EES ++TRS   V
Sbjct: 884 LSVPLGSSKTRDVLSRLQIVHVWERTSLGAEVEVRAEESWRMTRSDRGV 932

The following BLAST results are available for this feature:
BLAST of MELO3C031398 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0066997.11.9e-0965.15hypothetical protein E6C27_scaffold38G00260 [Cucumis melo var. makuwa] >TYJ96806... [more]
KAA0061424.17.0e-0966.07ABC transporter B family member 19-like [Cucumis melo var. makuwa][more]
TYK04651.12.1e-0864.29ABC transporter B family member 19-like [Cucumis melo var. makuwa][more]
KAA0039203.11.1e-0650.00hypothetical protein E6C27_scaffold121G001210 [Cucumis melo var. makuwa] >TYK184... [more]
KAA0063028.17.3e-0667.35pol protein [Cucumis melo var. makuwa][more]
BLAST of MELO3C031398 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C031398 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BCW49.0e-1065.15Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7V2E73.4e-0966.07ABC transporter B family member 19-like OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5D3BY909.9e-0964.29ABC transporter B family member 19-like OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5D3D4L85.4e-0750.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7V5Y43.5e-0667.35Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G001350 P... [more]
BLAST of MELO3C031398 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C031398.1MELO3C031398.1mRNA