MELO3C031389 (gene) Melon (DHL92) v4

Overview


Name	MELO3C031389
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	NBS-LRR type resistance protein
Location	chr05: 13233694 .. 13234573 (+)
RNA-Seq Expression	MELO3C031389
Synteny	MELO3C031389

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAGAGCAATTACGGACGAACAAGGCTGCTAGACAGAAGCAGCCTTACAATCATAGTAGCGGGTCCAAGTCGTTTCTACAACGACAGTATGAGCTCGCTGAAAGAAAAGGGGAGCCGGTCGATCGTGTGGAATTGTTTCGGGAAACACACATTCGACCTGGGACATTCGTGTCACAGCCGCCGAGGATGCGCATGTAAGTTATGCCCTTATTAATTATCCACTTTCATTATATATTTTTGCGGGTTACCTAACATAGTTTTTAAATTTGTTGCAGAATCAAATGCTGGAACTCCAATCTCAGCCTACCCCAGAGGGTAGTCAGCCACTCTCTGAGGATGAGATATGCAATCAGGTTTTGGATAGACGACCAGGCTACTCAAAAGGCCTTGGTTGGGGACCCAAGCCGAAGGCCCGCAGAACGGCGAGTGCAAGCAGTTCGTCAACATCTTGTTCGCAGTCCACAGAAAAAGAGATTGAATTACAAGCTAAACTTCATGAAGCTTTGGAACGGATTGAAGTACAAAATAGAAATCACCAAGCATTAGCTTCACAAGTGGAAAGTATGAAAAAGATGATAGAAGAACTAACTCGTGCACAACAGGGACCACCACATGATCCCAAGCTCTACGGTACGTATATGTCTCTATTATTCTTAAGTTTTTGCAATATATGATTATGTACTAAACTTAGTTATTTTTATACCATTTTTAGGACCGAAGGTGTAGAATAACGCGCATACGCACCTCGTTGGGAGACTTTTTCTTAATGTTTATGTTTCTTCTATTTTGAGAACTATATTTTGTTGTAGTGAACTTATTCGTATTATTCATTTTAATCCTATTTTTTTAATTTGTGTTTGTATATTTCTTAATTTAT

mRNA sequence

ATGCAAGAGCAATTACGGACGAACAAGGCTGCTAGACAGAAGCAGCCTTACAATCATAGTAGCGGGTCCAAGTCGTTTCTACAACGACAGTATGAGCTCGCTGAAAGAAAAGGGGAGCCGGTCGATCGTGTGGAATTGTTTCGGGAAACACACATTCGACCTGGGACATTCGTGTCACAGCCGCCGAGGATGCGCATAATCAAATGCTGGAACTCCAATCTCAGCCTACCCCAGAGGGTAGTCAGCCACTCTCTGAGGATGAGATATGCAATCAGGTTTTGGATAGACGACCAGGCTACTCAAAAGGCCTTGGTTGGGGACCCAAGCCGAAGGCCCGCAGAACGGCGAGTGCAAGCAGTTCGTCAACATCTTGTTCGCAGTCCACAGAAAAAGAGATTGAATTACAAGCTAAACTTCATGAAGCTTTGGAACGGATTGAAGTACAAAATAGAAATCACCAAGCATTAGCTTCACAAGTGGAAAGTATGAAAAAGATGATAGAAGAACTAACTCGTGCACAACAGGGACCACCACATGATCCCAAGCTCTACGGACCGAAGGTGTAGAATAACGCGCATACGCACCTCGTTGGGAGACTTTTTCTTAATGTTTATGTTTCTTCTATTTTGAGAACTATATTTTGTTGTAGTGAACTTATTCGTATTATTCATTTTAATCCTATTTTTTTAATTTGTGTTTGTATATTTCTTAATTTAT

Coding sequence (CDS)

ATGCAAGAGCAATTACGGACGAACAAGGCTGCTAGACAGAAGCAGCCTTACAATCATAGTAGCGGGTCCAAGTCGTTTCTACAACGACAGTATGAGCTCGCTGAAAGAAAAGGGGAGCCGGTCGATCGTGTGGAATTGTTTCGGGAAACACACATTCGACCTGGGACATTCGTGTCACAGCCGCCGAGGATGCGCATAATCAAATGCTGGAACTCCAATCTCAGCCTACCCCAGAGGGTAGTCAGCCACTCTCTGAGGATGAGATATGCAATCAGGTTTTGGATAGACGACCAGGCTACTCAAAAGGCCTTGGTTGGGGACCCAAGCCGAAGGCCCGCAGAACGGCGAGTGCAAGCAGTTCGTCAACATCTTGTTCGCAGTCCACAGAAAAAGAGATTGAATTACAAGCTAAACTTCATGAAGCTTTGGAACGGATTGAAGTACAAAATAGAAATCACCAAGCATTAG

Protein sequence

MQEQLRTNKAARQKQPYNHSSGSKSFLQRQYELAERKGEPVDRVELFRETHIRPGTFVSQPPRMRIIKCWNSNLSLPQRVVSHSLRMRYAIRFWIDDQATQKALVGDPSRRPAERRVQAVRQHLVRSPQKKRLNYKLNFMKLWNGLKYKIEITKH

Homology

[Close]

BLAST of MELO3C031389 vs. NCBI nr
Match: KAA0062115.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 246.5 bits (628), Expect = 1.5e-61
Identity = 127/154 (82.47%), Postives = 131/154 (85.06%), Query Frame = 0


Query: 2   QEQLRTNKAARQKQPYNHSSGSKSFLQRQYELAERKGEPVDRVELFRETHIRPGTFVSQP 61
           QEQ RTNKAARQKQPYNHSSGSKSFLQRQYELAERKG        F +     G    +P
Sbjct: 267 QEQSRTNKAARQKQPYNHSSGSKSFLQRQYELAERKGSRSIVWNYFGKYTFELGYSCRRP 326

Query: 62  PRMRIIKCWNSNLSLPQRVVSHSLRMRYAIRFWIDDQATQKALVGDPSRRPAERRVQAVR 121
           PRMRIIKCWNSNLSLPQRVVSHSLRMRYAIR W+DDQA QKALVGDPSRRP ERRVQAVR
Sbjct: 327 PRMRIIKCWNSNLSLPQRVVSHSLRMRYAIRCWVDDQAAQKALVGDPSRRPVERRVQAVR 386

Query: 122 QHLVRSPQKKRLNYKLNFMKLWNGLKYKIEITKH 156
           +HLVRSPQKKRLNYKLNF KLWNGLKYKIEITKH
Sbjct: 387 RHLVRSPQKKRLNYKLNFKKLWNGLKYKIEITKH 420

[Close]

BLAST of MELO3C031389 vs. NCBI nr
Match: KAA0048153.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 240.4 bits (612), Expect = 1.1e-59
Identity = 126/158 (79.75%), Postives = 134/158 (84.81%), Query Frame = 0


Query: 2   QEQLRTNKAARQKQPYNHSSGSKSFLQRQYELAERKGEPVDRVELFRETHIRPGTFVSQP 61
           Q+Q RTNKA RQKQPYNHSSGSKSFLQRQYEL ER+G+P+DRVELFRETHIR GTFVSQ 
Sbjct: 793 QDQSRTNKAIRQKQPYNHSSGSKSFLQRQYELTERRGQPIDRVELFRETHIRAGTFVSQA 852

Query: 62  PRMRIIKCWNSNLSLPQR----VVSHSLRMRYAIRFWIDDQATQKALVGDPSRRPAERRV 121
                    N  L L  +    VVSHSLRMRYAIR W+DDQATQKALVGDPSRRPAER+V
Sbjct: 853 AE----DAHNQMLELQSQPTPGVVSHSLRMRYAIRCWVDDQATQKALVGDPSRRPAERQV 912

Query: 122 QAVRQHLVRSPQKKRLNYKLNFMKLWNGLKYKIEITKH 156
           QAVR+HLVRSPQKKRLNYKLNFMKLWNGLKYKIEITKH
Sbjct: 913 QAVRRHLVRSPQKKRLNYKLNFMKLWNGLKYKIEITKH 946

[Close]

BLAST of MELO3C031389 vs. NCBI nr
Match: KAA0047463.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYJ98661.1 CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 232.3 bits (591), Expect = 2.9e-57
Identity = 120/148 (81.08%), Postives = 126/148 (85.14%), Query Frame = 0


Query: 8   NKAARQKQPYNHSSGSKSFLQRQYELAERKGEPVDRVELFRETHIRPGTFVSQPPRMRII 67
           NKAARQKQPYNHSSGSKSFLQRQYEL ERKGE +D VELFRETHIR G           I
Sbjct: 173 NKAARQKQPYNHSSGSKSFLQRQYELVERKGESIDCVELFRETHIRAGR----------I 232

Query: 68  KCWNSNLSLPQRVVSHSLRMRYAIRFWIDDQATQKALVGDPSRRPAERRVQAVRQHLVRS 127
           KCWNSN SLPQR+VSHSLRMRYAIR+ +D+QA QKALVGDPSRRPA RRV+AVRQHLVRS
Sbjct: 233 KCWNSNSSLPQRIVSHSLRMRYAIRYLVDNQAIQKALVGDPSRRPAGRRVRAVRQHLVRS 292

Query: 128 PQKKRLNYKLNFMKLWNGLKYKIEITKH 156
           P KKRLNYKLN MKLWNGLK KIEITKH
Sbjct: 293 PHKKRLNYKLNLMKLWNGLKCKIEITKH 310

[Close]

BLAST of MELO3C031389 vs. NCBI nr
Match: TYK30471.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 229.2 bits (583), Expect = 2.5e-56
Identity = 120/150 (80.00%), Postives = 128/150 (85.33%), Query Frame = 0


Query: 2   QEQLRTNKAARQKQPYNHSSGSKSFLQRQYELAERKGEPVDRVELFRETHIRPGTFVSQP 61
           QEQ  TNKAARQKQPYNHSSGSKSFLQRQYELAERKG+PVDRVELFRETH+R GTFV   
Sbjct: 155 QEQSLTNKAARQKQPYNHSSGSKSFLQRQYELAERKGQPVDRVELFRETHVRAGTFV--- 214

Query: 62  PRMRIIKCWNSNLSLPQRVVSHSLRMRYAIRFWIDDQATQKALVGDPSRRPAERRVQAVR 121
                        SLPQRVVSHSLRMRYAIR W+DDQATQKALVGDPSRRPAE +VQA+R
Sbjct: 215 -------------SLPQRVVSHSLRMRYAIRCWVDDQATQKALVGDPSRRPAEWQVQAIR 274

Query: 122 QHLVRSPQKKRLNYKLNFMKLWNGLKYKIE 152
           ++LVR+PQKKRLNYKLNFMKLWN LKYKIE
Sbjct: 275 RYLVRNPQKKRLNYKLNFMKLWNRLKYKIE 288

[Close]

BLAST of MELO3C031389 vs. NCBI nr
Match: KAA0046306.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 229.2 bits (583), Expect = 2.5e-56
Identity = 120/150 (80.00%), Postives = 128/150 (85.33%), Query Frame = 0


Query: 2   QEQLRTNKAARQKQPYNHSSGSKSFLQRQYELAERKGEPVDRVELFRETHIRPGTFVSQP 61
           QEQ  TNKAARQKQPYNHSSGSKSFLQRQYELAERKG+PVDRVELFRETH+R GTFV   
Sbjct: 165 QEQSLTNKAARQKQPYNHSSGSKSFLQRQYELAERKGQPVDRVELFRETHVRAGTFV--- 224

Query: 62  PRMRIIKCWNSNLSLPQRVVSHSLRMRYAIRFWIDDQATQKALVGDPSRRPAERRVQAVR 121
                        SLPQRVVSHSLRMRYAIR W+DDQATQKALVGDPSRRPAE +VQA+R
Sbjct: 225 -------------SLPQRVVSHSLRMRYAIRCWVDDQATQKALVGDPSRRPAEWQVQAIR 284

Query: 122 QHLVRSPQKKRLNYKLNFMKLWNGLKYKIE 152
           ++LVR+PQKKRLNYKLNFMKLWN LKYKIE
Sbjct: 285 RYLVRNPQKKRLNYKLNFMKLWNRLKYKIE 298

[Close]

BLAST of MELO3C031389 vs. ExPASy TrEMBL
Match: A0A5A7V882 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G004710 PE=4 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 7.2e-62
Identity = 127/154 (82.47%), Postives = 131/154 (85.06%), Query Frame = 0


Query: 2   QEQLRTNKAARQKQPYNHSSGSKSFLQRQYELAERKGEPVDRVELFRETHIRPGTFVSQP 61
           QEQ RTNKAARQKQPYNHSSGSKSFLQRQYELAERKG        F +     G    +P
Sbjct: 267 QEQSRTNKAARQKQPYNHSSGSKSFLQRQYELAERKGSRSIVWNYFGKYTFELGYSCRRP 326

Query: 62  PRMRIIKCWNSNLSLPQRVVSHSLRMRYAIRFWIDDQATQKALVGDPSRRPAERRVQAVR 121
           PRMRIIKCWNSNLSLPQRVVSHSLRMRYAIR W+DDQA QKALVGDPSRRP ERRVQAVR
Sbjct: 327 PRMRIIKCWNSNLSLPQRVVSHSLRMRYAIRCWVDDQAAQKALVGDPSRRPVERRVQAVR 386

Query: 122 QHLVRSPQKKRLNYKLNFMKLWNGLKYKIEITKH 156
           +HLVRSPQKKRLNYKLNF KLWNGLKYKIEITKH
Sbjct: 387 RHLVRSPQKKRLNYKLNFKKLWNGLKYKIEITKH 420

[Close]

BLAST of MELO3C031389 vs. ExPASy TrEMBL
Match: A0A5A7TX19 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold63G00520 PE=4 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 5.2e-60
Identity = 126/158 (79.75%), Postives = 134/158 (84.81%), Query Frame = 0


Query: 2   QEQLRTNKAARQKQPYNHSSGSKSFLQRQYELAERKGEPVDRVELFRETHIRPGTFVSQP 61
           Q+Q RTNKA RQKQPYNHSSGSKSFLQRQYEL ER+G+P+DRVELFRETHIR GTFVSQ 
Sbjct: 793 QDQSRTNKAIRQKQPYNHSSGSKSFLQRQYELTERRGQPIDRVELFRETHIRAGTFVSQA 852

Query: 62  PRMRIIKCWNSNLSLPQR----VVSHSLRMRYAIRFWIDDQATQKALVGDPSRRPAERRV 121
                    N  L L  +    VVSHSLRMRYAIR W+DDQATQKALVGDPSRRPAER+V
Sbjct: 853 AE----DAHNQMLELQSQPTPGVVSHSLRMRYAIRCWVDDQATQKALVGDPSRRPAERQV 912

Query: 122 QAVRQHLVRSPQKKRLNYKLNFMKLWNGLKYKIEITKH 156
           QAVR+HLVRSPQKKRLNYKLNFMKLWNGLKYKIEITKH
Sbjct: 913 QAVRRHLVRSPQKKRLNYKLNFMKLWNGLKYKIEITKH 946

[Close]

BLAST of MELO3C031389 vs. ExPASy TrEMBL
Match: A0A5D3BIY8 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold507G00510 PE=4 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 1.4e-57
Identity = 120/148 (81.08%), Postives = 126/148 (85.14%), Query Frame = 0


Query: 8   NKAARQKQPYNHSSGSKSFLQRQYELAERKGEPVDRVELFRETHIRPGTFVSQPPRMRII 67
           NKAARQKQPYNHSSGSKSFLQRQYEL ERKGE +D VELFRETHIR G           I
Sbjct: 173 NKAARQKQPYNHSSGSKSFLQRQYELVERKGESIDCVELFRETHIRAGR----------I 232

Query: 68  KCWNSNLSLPQRVVSHSLRMRYAIRFWIDDQATQKALVGDPSRRPAERRVQAVRQHLVRS 127
           KCWNSN SLPQR+VSHSLRMRYAIR+ +D+QA QKALVGDPSRRPA RRV+AVRQHLVRS
Sbjct: 233 KCWNSNSSLPQRIVSHSLRMRYAIRYLVDNQAIQKALVGDPSRRPAGRRVRAVRQHLVRS 292

Query: 128 PQKKRLNYKLNFMKLWNGLKYKIEITKH 156
           P KKRLNYKLN MKLWNGLK KIEITKH
Sbjct: 293 PHKKRLNYKLNLMKLWNGLKCKIEITKH 310

[Close]

BLAST of MELO3C031389 vs. ExPASy TrEMBL
Match: A0A5D3E4H2 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold426G00130 PE=4 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 1.2e-56
Identity = 120/150 (80.00%), Postives = 128/150 (85.33%), Query Frame = 0


Query: 2   QEQLRTNKAARQKQPYNHSSGSKSFLQRQYELAERKGEPVDRVELFRETHIRPGTFVSQP 61
           QEQ  TNKAARQKQPYNHSSGSKSFLQRQYELAERKG+PVDRVELFRETH+R GTFV   
Sbjct: 155 QEQSLTNKAARQKQPYNHSSGSKSFLQRQYELAERKGQPVDRVELFRETHVRAGTFV--- 214

Query: 62  PRMRIIKCWNSNLSLPQRVVSHSLRMRYAIRFWIDDQATQKALVGDPSRRPAERRVQAVR 121
                        SLPQRVVSHSLRMRYAIR W+DDQATQKALVGDPSRRPAE +VQA+R
Sbjct: 215 -------------SLPQRVVSHSLRMRYAIRCWVDDQATQKALVGDPSRRPAEWQVQAIR 274

Query: 122 QHLVRSPQKKRLNYKLNFMKLWNGLKYKIE 152
           ++LVR+PQKKRLNYKLNFMKLWN LKYKIE
Sbjct: 275 RYLVRNPQKKRLNYKLNFMKLWNRLKYKIE 288

[Close]

BLAST of MELO3C031389 vs. ExPASy TrEMBL
Match: A0A5A7TVZ5 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold149G00130 PE=4 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 1.2e-56
Identity = 120/150 (80.00%), Postives = 128/150 (85.33%), Query Frame = 0


Query: 2   QEQLRTNKAARQKQPYNHSSGSKSFLQRQYELAERKGEPVDRVELFRETHIRPGTFVSQP 61
           QEQ  TNKAARQKQPYNHSSGSKSFLQRQYELAERKG+PVDRVELFRETH+R GTFV   
Sbjct: 165 QEQSLTNKAARQKQPYNHSSGSKSFLQRQYELAERKGQPVDRVELFRETHVRAGTFV--- 224

Query: 62  PRMRIIKCWNSNLSLPQRVVSHSLRMRYAIRFWIDDQATQKALVGDPSRRPAERRVQAVR 121
                        SLPQRVVSHSLRMRYAIR W+DDQATQKALVGDPSRRPAE +VQA+R
Sbjct: 225 -------------SLPQRVVSHSLRMRYAIRCWVDDQATQKALVGDPSRRPAEWQVQAIR 284

Query: 122 QHLVRSPQKKRLNYKLNFMKLWNGLKYKIE 152
           ++LVR+PQKKRLNYKLNFMKLWN LKYKIE
Sbjct: 285 RYLVRNPQKKRLNYKLNFMKLWNRLKYKIE 298

The following BLAST results are available for this feature:

BLAST of MELO3C031389 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0062115.1	1.5e-61	82.47	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]
KAA0048153.1	1.1e-59	79.75	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0047463.1	2.9e-57	81.08	CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYJ98661.1 CACTA en-...	[more]
TYK30471.1	2.5e-56	80.00	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]
KAA0046306.1	2.5e-56	80.00	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C031389 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C031389 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V882	7.2e-62	82.47	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5A7TX19	5.2e-60	79.75	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold63...	[more]
A0A5D3BIY8	1.4e-57	81.08	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5D3E4H2	1.2e-56	80.00	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5A7TVZ5	1.2e-56	80.00	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]

BLAST of MELO3C031389 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004252	Probable transposase, Ptta/En/Spm, plant	PFAM	PF03004	Transposase_24	coord: 2..60 e-value: 3.9E-13 score: 49.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C031389.1	MELO3C031389.1	mRNA