MELO3C031335.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C031335.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	CACTA en-spm transposon protein
Location	chr05: 9512082 .. 9513895 (-)
RNA-Seq Expression	MELO3C031335.jh1
Synteny	MELO3C031335.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTTCGAACAATGTGGTAAGGTAACTTTTTTTTAGTTAGTAGTGATAAATTTTTAGTTAGTTCAAAAATTTTGTTTATTGATTTTTGCTCCATTGTTGTTTAGATCTAGATTTTGTGTGAAAATTTGGGAGAAAAATTCTTTTCATTTGATCATTCCATCCTTGCATATATCTAGATTTTTTTTCTTAAAAAAAGTTCCCTAGGAGTTAGATTGTCTCACTTACATGATTTCACTTTTGAATTGATAAAATGTTTGTCCTTTAGATGGTCTAAAACTGATATTTATTGGACAATGGGACAATGTAACCAAATGAAATTTATGACTACATTGACAAATTGAGGTTCGTCATAAGGTTATGTGAAACTTGATCCGATGAAAAATACTCATTCTATCTTAAGGATGCGTGCATAATTGAAATCTAGAGTAGACTCTCTATTTTACTTGTTAAACTAAACTTGAGTCAAGAAATTTAGTTGCATTCTGCATGTAGAAAGATAACTTGTGAAGTTGGCCTACTTTAAGTAGGAAGAATAAGCATGAGATTGATAATTTGGAAAGAGTAGAGTTTCATGTATGTATCTCCTTGATAATATTACTCTAACAATAGATTCTAGATATGAGTTTATTTCATTGTTTGTTTTTGTTCTATTCTATGTGTTTTTAAATAAAATAAAATAAATATTTATTGTTTATAAGTTGAAAAAATATGAAAATTTGTTGAACTAACTCCTATGTTGCGTATAATTGTTTTTCAGGACTGAAAGGAAACATGAAAGGTAATACCACATGAAAATTGTATAGGTTGTGGACTCTTTGTGTGTTATCGTTTAAAGGAAGATTTGGAATTTGCTTCTTCATATATATCTTCTAGTATGACGTTGGATCATGATTCATATGAGTTTTTCGATGTGTAACACGGGCAGATTAAAATTTTCATTCATTAAACAAATTTCTTTTTCCTTGAATAAGTGACATTAGTATGTAACAATAAGTTGATTATTTTGATTGAATGTATTGATTTTCATATCAAATTATTTTTGTTTGTTATATAGTAGAGTATGGAAAAAACTATAGTGAGTTTTTGTTTAATGATTTAGTTATTTTTCTAATTTTGCAAACATATCACAAGGATCTTTAAGACGTCTAAACTTTTTAAGGCAAAGAGGAGGATAATTATGCTAGAATTTTTAAGGTTCCAAAATCAAATTTTTATCTCTCTTACACTACAAGAAAATGGATTATTCCCGACGCAAAAAATGACGTCGGCATAAGGAACGTCGGGAATAAGGGTTTTCCCGACGCCGTGAACACCGCGTCGGGCAAAGCATCGGGAAAACACTATTTTCCGACGCACCAAGTAAGCGTCGGCAAGAATTCGTCGGGAGAAGGGTAAATTAAATTTTAAAAACAAACTATTCCCGACGCCGTGCACAATGCGTCGGGAACGGCGTCGGGAAAAGGGGTTTTTCCCGACGCATTATTAAGCGTCGGGAAAACCGTTTTAGTGAGCATCGGGAATGCCCCTTTTCCCGACGCCGCGGCACTGTATCGGGAAATCCCCCTTTTAATCGTTTCCATTATGTAATTTACAGAACCGAAACCGAGAGGGAAAACGAGAGGAGAAGCCGAGAGGGGAGAAGAGAGAATCGTCTTCGCTGTTCCGTGTTCGCCGTGCCTTGCCACCGTCCTTGCCGCCATTCAGCCGTCATCTACCACTTTAGGTAAGTGGAAGTTTAAATTTTATTTAGTTTAAATTTAGATTTTTGTTTGTTAAAAGAAAATGAAAATGAAGATAAATTAGGAAACTGA

mRNA sequence

ATGGAGTTCGAACAATGTGGTAAGAGTATGGAAAAAACTATAGTTCCAAAATCAAATTTTTATCTCTCTTACACTACAAGAAAATGGATTATTCCCGACGCAAAAAATGACGTCGGCATAAGGAACGTCGGGAATAAGGGTTTTCCCGACGCCGTGAACACCGCGTCGGGCAAAGCATCGGGAAAACACTATTTTCCGACGCACCAAGTAAGCGTCGGCAAGAATTCGTCGGGAGAAGGAACCGAAACCGAGAGGGAAAACGAGAGGAGAAGCCGAGAGGGGAGAAGAGAGAATCGTCTTCGCTGTTCCGTGTTCGCCGTGCCTTGCCACCGTCCTTGCCGCCATTCAGCCGTCATCTACCACTTTAGATTTTTGTTTGTTAAAAGAAAATGAAAATGAAGATAAATTAGGAAACTGA

Coding sequence (CDS)

ATGGAGTTCGAACAATGTGGTAAGAGTATGGAAAAAACTATAGTTCCAAAATCAAATTTTTATCTCTCTTACACTACAAGAAAATGGATTATTCCCGACGCAAAAAATGACGTCGGCATAAGGAACGTCGGGAATAAGGGTTTTCCCGACGCCGTGAACACCGCGTCGGGCAAAGCATCGGGAAAACACTATTTTCCGACGCACCAAGTAAGCGTCGGCAAGAATTCGTCGGGAGAAGGAACCGAAACCGAGAGGGAAAACGAGAGGAGAAGCCGAGAGGGGAGAAGAGAGAATCGTCTTCGCTGTTCCGTGTTCGCCGTGCCTTGCCACCGTCCTTGCCGCCATTCAGCCGTCATCTACCACTTTAGATTTTTGTTTGTTAAAAGAAAATGA

Protein sequence

MEFEQCGKSMEKTIVPKSNFYLSYTTRKWIIPDAKNDVGIRNVGNKGFPDAVNTASGKASGKHYFPTHQVSVGKNSSGEGTETERENERRSREGRRENRLRCSVFAVPCHRPCRHSAVIYHFRFLFVKRK

Homology

[Close]

BLAST of MELO3C031335.jh1 vs. NCBI nr
Match: KAA0025458.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 166 bits (419), Expect = 2.75e-46
Identity = 88/114 (77.19%), Postives = 91/114 (79.82%), Query Frame = 0


Query: 23  SYTTRKWIIPDAKNDVGIRNVGNKGFPDAVNTASGKASGKHYFPTHQVSVGKNSSGEGTE 82
           SYTTR WII DA++DVGIRNVGNKGFPDAVNTASGKASGKH FPTHQ SVGKNSSGEGTE
Sbjct: 17  SYTTRNWIISDAEHDVGIRNVGNKGFPDAVNTASGKASGKHSFPTHQESVGKNSSGEGTE 76

Query: 83  TERENERRSREGRRENRLRCSVF--------------AVPCHRPCRHSAVIYHF 122
           TERENERRSREGRRENR R SVF              AVPC RPCRHSA + HF
Sbjct: 77  TERENERRSREGRRENRCRRSVFCHRRLPPSLPPSLAAVPCRRPCRHSAAVCHF 130

[Close]

BLAST of MELO3C031335.jh1 vs. NCBI nr
Match: TYK21553.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 146 bits (369), Expect = 2.38e-38
Identity = 75/79 (94.94%), Postives = 76/79 (96.20%), Query Frame = 0


Query: 27  RKWIIPDAKNDVGIRNVGNKGFPDAVNTASGKASGKHYFPTHQVSVGKNSSGEGTETERE 86
           RKWIIPDAKNDVGIRNVGNKGFPDAVNTASGKASGKHYFP HQVSV KNSSGEGTETERE
Sbjct: 22  RKWIIPDAKNDVGIRNVGNKGFPDAVNTASGKASGKHYFPMHQVSVDKNSSGEGTETERE 81

Query: 87  NERRSREGRRENRLRCSVF 105
           NERRSREGRRENRLR S+F
Sbjct: 82  NERRSREGRRENRLRHSMF 100

[Close]

BLAST of MELO3C031335.jh1 vs. NCBI nr
Match: TYK18843.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 144 bits (362), Expect = 7.73e-38
Identity = 74/81 (91.36%), Postives = 75/81 (92.59%), Query Frame = 0


Query: 25  TTRKWIIPDAKNDVGIRNVGNKGFPDAVNTASGKASGKHYFPTHQVSVGKNSSGEGTETE 84
           TTRKWIIPD +NDVGIRNVGNKGFPDAVNTASG ASGKHYFPTHQ SVGKNSSGEGTETE
Sbjct: 3   TTRKWIIPDEENDVGIRNVGNKGFPDAVNTASGNASGKHYFPTHQESVGKNSSGEGTETE 62

Query: 85  RENERRSREGRRENRLRCSVF 105
           RENERRSREGRRENR   SVF
Sbjct: 63  RENERRSREGRRENRRPRSVF 83

[Close]

BLAST of MELO3C031335.jh1 vs. NCBI nr
Match: KAA0026299.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 139 bits (351), Expect = 2.83e-36
Identity = 72/81 (88.89%), Postives = 73/81 (90.12%), Query Frame = 0


Query: 25  TTRKWIIPDAKNDVGIRNVGNKGFPDAVNTASGKASGKHYFPTHQVSVGKNSSGEGTETE 84
           TTRKWIIPD +NDVGIRNVGNKGFPDAVNTASG ASGKHYFPTHQ SVGKN SGEGTET 
Sbjct: 38  TTRKWIIPDVENDVGIRNVGNKGFPDAVNTASGNASGKHYFPTHQESVGKNLSGEGTETA 97

Query: 85  RENERRSREGRRENRLRCSVF 105
           RENERRSREGRRENR   SVF
Sbjct: 98  RENERRSREGRRENRRPRSVF 118

[Close]

BLAST of MELO3C031335.jh1 vs. NCBI nr
Match: TYK21492.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 139 bits (351), Expect = 4.76e-36
Identity = 72/81 (88.89%), Postives = 73/81 (90.12%), Query Frame = 0


Query: 25  TTRKWIIPDAKNDVGIRNVGNKGFPDAVNTASGKASGKHYFPTHQVSVGKNSSGEGTETE 84
           TTRKWIIPD +NDVGIRNVGNKGFPDAVNTASG ASGKHYFPTHQ SVGKN SGEGTET 
Sbjct: 38  TTRKWIIPDVENDVGIRNVGNKGFPDAVNTASGNASGKHYFPTHQESVGKNLSGEGTETA 97

Query: 85  RENERRSREGRRENRLRCSVF 105
           RENERRSREGRRENR   SVF
Sbjct: 98  RENERRSREGRRENRRPRSVF 118

[Close]

BLAST of MELO3C031335.jh1 vs. ExPASy TrEMBL
Match: A0A5A7SH41 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold417G00560 PE=4 SV=1)

HSP 1 Score: 166 bits (419), Expect = 1.33e-46
Identity = 88/114 (77.19%), Postives = 91/114 (79.82%), Query Frame = 0


Query: 23  SYTTRKWIIPDAKNDVGIRNVGNKGFPDAVNTASGKASGKHYFPTHQVSVGKNSSGEGTE 82
           SYTTR WII DA++DVGIRNVGNKGFPDAVNTASGKASGKH FPTHQ SVGKNSSGEGTE
Sbjct: 17  SYTTRNWIISDAEHDVGIRNVGNKGFPDAVNTASGKASGKHSFPTHQESVGKNSSGEGTE 76

Query: 83  TERENERRSREGRRENRLRCSVF--------------AVPCHRPCRHSAVIYHF 122
           TERENERRSREGRRENR R SVF              AVPC RPCRHSA + HF
Sbjct: 77  TERENERRSREGRRENRCRRSVFCHRRLPPSLPPSLAAVPCRRPCRHSAAVCHF 130

[Close]

BLAST of MELO3C031335.jh1 vs. ExPASy TrEMBL
Match: A0A5D3DDA9 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold275G00450 PE=4 SV=1)

HSP 1 Score: 146 bits (369), Expect = 1.15e-38
Identity = 75/79 (94.94%), Postives = 76/79 (96.20%), Query Frame = 0


Query: 27  RKWIIPDAKNDVGIRNVGNKGFPDAVNTASGKASGKHYFPTHQVSVGKNSSGEGTETERE 86
           RKWIIPDAKNDVGIRNVGNKGFPDAVNTASGKASGKHYFP HQVSV KNSSGEGTETERE
Sbjct: 22  RKWIIPDAKNDVGIRNVGNKGFPDAVNTASGKASGKHYFPMHQVSVDKNSSGEGTETERE 81

Query: 87  NERRSREGRRENRLRCSVF 105
           NERRSREGRRENRLR S+F
Sbjct: 82  NERRSREGRRENRLRHSMF 100

[Close]

BLAST of MELO3C031335.jh1 vs. ExPASy TrEMBL
Match: A0A5D3D5L1 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold204G00360 PE=4 SV=1)

HSP 1 Score: 144 bits (362), Expect = 3.74e-38
Identity = 74/81 (91.36%), Postives = 75/81 (92.59%), Query Frame = 0


Query: 25  TTRKWIIPDAKNDVGIRNVGNKGFPDAVNTASGKASGKHYFPTHQVSVGKNSSGEGTETE 84
           TTRKWIIPD +NDVGIRNVGNKGFPDAVNTASG ASGKHYFPTHQ SVGKNSSGEGTETE
Sbjct: 3   TTRKWIIPDEENDVGIRNVGNKGFPDAVNTASGNASGKHYFPTHQESVGKNSSGEGTETE 62

Query: 85  RENERRSREGRRENRLRCSVF 105
           RENERRSREGRRENR   SVF
Sbjct: 63  RENERRSREGRRENRRPRSVF 83

[Close]

BLAST of MELO3C031335.jh1 vs. ExPASy TrEMBL
Match: A0A5A7SLZ7 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19G003080 PE=4 SV=1)

HSP 1 Score: 139 bits (351), Expect = 1.37e-36
Identity = 72/81 (88.89%), Postives = 73/81 (90.12%), Query Frame = 0


Query: 25  TTRKWIIPDAKNDVGIRNVGNKGFPDAVNTASGKASGKHYFPTHQVSVGKNSSGEGTETE 84
           TTRKWIIPD +NDVGIRNVGNKGFPDAVNTASG ASGKHYFPTHQ SVGKN SGEGTET 
Sbjct: 38  TTRKWIIPDVENDVGIRNVGNKGFPDAVNTASGNASGKHYFPTHQESVGKNLSGEGTETA 97

Query: 85  RENERRSREGRRENRLRCSVF 105
           RENERRSREGRRENR   SVF
Sbjct: 98  RENERRSREGRRENRRPRSVF 118

[Close]

BLAST of MELO3C031335.jh1 vs. ExPASy TrEMBL
Match: A0A5D3DD39 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold305G00290 PE=4 SV=1)

HSP 1 Score: 139 bits (351), Expect = 2.30e-36
Identity = 72/81 (88.89%), Postives = 73/81 (90.12%), Query Frame = 0


Query: 25  TTRKWIIPDAKNDVGIRNVGNKGFPDAVNTASGKASGKHYFPTHQVSVGKNSSGEGTETE 84
           TTRKWIIPD +NDVGIRNVGNKGFPDAVNTASG ASGKHYFPTHQ SVGKN SGEGTET 
Sbjct: 38  TTRKWIIPDVENDVGIRNVGNKGFPDAVNTASGNASGKHYFPTHQESVGKNLSGEGTETA 97

Query: 85  RENERRSREGRRENRLRCSVF 105
           RENERRSREGRRENR   SVF
Sbjct: 98  RENERRSREGRRENRRPRSVF 118

The following BLAST results are available for this feature:

BLAST of MELO3C031335.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0025458.1	2.75e-46	77.19	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]
TYK21553.1	2.38e-38	94.94	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]
TYK18843.1	7.73e-38	91.36	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]
KAA0026299.1	2.83e-36	88.89	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]
TYK21492.1	4.76e-36	88.89	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C031335.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C031335.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SH41	1.33e-46	77.19	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5D3DDA9	1.15e-38	94.94	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5D3D5L1	3.74e-38	91.36	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5A7SLZ7	1.37e-36	88.89	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5D3DD39	2.30e-36	88.89	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]

BLAST of MELO3C031335.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 79..97
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..97

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C031335.jh1.t1	MELO3C031335.jh1.t1	mRNA