MELO3C031310.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C031310.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionZinc finger, CCHC-type
Locationchr05: 8766183 .. 8768991 (-)
RNA-Seq ExpressionMELO3C031310.jh1
SyntenyMELO3C031310.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGAATAGTGAAGCTCACACCAACTCAAATGAAGCACGTGTTGGAAATTCATGGGAGAACTTTCAAAGTCAAACCAATGAAGAGACAATCATTATGACAAAAGCTAAAGCTAAAAGACTTCAAGATGGATTAAATGCTTGTTTACAAGCTAGATTTTTTGTCTTCAATAAAGAGTTTGAACTTCAAGATTCACTTGGACACCCAAGAGTCATAATGAATCTAGAAATTAAGATTCATTCACATTTTTAATGCATTTTTAGATTCATTCACATCTTTAATATGTACCTATTTAATGGTATGTATTTTCATTTCTTAGGGTAGTTGAAAGGGCATAAAATTAAATGTTATGTCCTTTCATATAAAATTTGAAATTAGCATAAATAGGGTTGTAGTTTCCACATTTTGAACCCAACTTGAATTTGAATGAAATTTCTCATAGAGTATTTCTCTTAAGCTTTATGCTTTCCTTTGTATTTTGGTGTTAGAATGCATGCTTAGGACTTTCAATCTAGTTTGATCAATTAGAATGTGGAGAGTTCGAAATCTTGAAGTTAGGAACAAGTTCTCCTTTCTTCTTGATTTTTGATCAATCTTTCCAAGCCAATTTGTTTAGCTTTCTTGGGGTTGTTAACTAATTGTTTAATCGGGGTTATTCTTATTACTGTTGTGGGGGTTCATCTAGGATAAGGGAGGTTCTCAAACGTGATTGAGGTAGTTTCGTTTATCATTGATTTACTACCCATTGCAATAGTGAGATTCTTTTGGTCTTAATTATTTTCTTATTCAAGTTTTTGTCATTGTGTAAGTGATCTTAATACACACGAATGTTATCATTATTATTATTTTTGTAATTGTAACTTGGTTAACTGAATTATTGTAGGAGTTGATAAGTTGGGTCATGGATGCTAAGACTTTAATAGTTTGTGGGGACATTCCAATTGGGTGTAATCCATTATATCTCATAATGTAAGAAAATTCAGCTTAAACTCAGAAAATGGTTGTTTGAATTGGCTGAACTAATTCTTCAAGAACCATAATAAGTGAATTGTTATGACTATCCTACAGTTACAATAGTCATATATTAGTTTTTGCTATGTTATTGATGAAGCTTTTGTTTGGTTTGAGTTAATTTAATGCTTTTTGTTAATGAAATTTGGGTTGTTTCGATCGCGTTCATTGTTATGTTGAAAATTTATTATGTGGCTATCACATTTCAATATATCGCTAGTTTTTGTGTTTACTTTCTCTTGGCACAGAAGGGTGAAGTTATTTTTGCTTGAAGGATGTTTTTTGTTAACGACCGAAGGATTGGGGTTGGCAGTTCTTCAATGGAAGGATTTGCAAAGTCTTGAAGTAGTATCATGTAAGAATAAAAAAGATAGTTCCATCGTCTCTCCTGCTCTTTCTGAAATCATCTCTGTTCTTAAGAATTTGAAATGGAGGTAGGAGTCTGGTAGAAGTGCTCTTGATAGCTCCGAAGGAAAAAAAAATCTGCATGTATAGGCAAAGTAGATAATTTGAGTTTATGAGTTGGTTTTATTTCTAGATTCTTGCTTGAAAAATTGAAACGAGGAAAAATTTGAGTGGGATGAAATTTGTGTTGCTTGCAAAATTGCATCTTGTATAAATTTGAGTTGCATATTCTATATGTTAGTCTACTTGAGCATTCCCCTTCCTTCACACGCTTCTTCCATGAGCCTTGATAGTACAGAAGTGTGACATGTTTATCCAAAATTATGGCTTGCAATTTCTTTGTTATAAAAGTGTGAAACAATTTTACTAAACATGAGCCCAAGACTATGTTTATTGTACTTATCCTTTTCATTCTTAGGAATTGTAGCATTACTCCATACAATTTTAATTCGACACTATCTCAGCTTCAAGTCTATTGTTAATTAGTTGTTGGAATGCTAGGGGATCAACCTTCAATTTTTATTATTAATTTTTCATTGTTTGCCTAGTCTCAAGAGGTATTAACTTTTAATATTAACTTCAATTTTGGTTCTCTCTTTGATTTCTTTCCAAAGGTTTATTGCTAGCTCATGCTAGGCTTCTTGTCGTGTCATTTATTGGACTTCTTACTGCACTCTCTTCCTTTTCAAACTCATCCTCACTTCCACCTTTACAAATTTTTGCACCGAAAGTTGTAACAAAGAAGATGGACATGCAAGCTTAGATGAAGTTTTGCAGAAATTAAGGTATTCAAGCTAATTAGGAAATTAATTTATTCAAGCTTCAATGGAATTCGTGAATCATGTTGTCATTTGCTCCTACGTTTTAAGACATTATAGGTTGTGTTGCTTACTTTTAGAAGCTTTAATAGTTTTTACTTTTTTCTTGTGTTTTTAGGACTATGTAGGTTGTGGTGCAACTTTAGTAGTTTTTAAGTTTTTCTTTTATATTTGTTGTGATTTCTTTTTGTATCTTATTAATATAGGTGCTAAAAGCGGTGAGTTCGAGGTGTGCTACATTAATCTTGTGGAGATGGGAGCATAGTGAGAAAGATTTTGCTAGGATTACTTTATATGGGATTGATAGGTGAGTAATTTTTGGAATTTTTCATATGGGGCGAGGGGGTGTTGATTTTAGTTTTGGAAATGTGTTTATATGGGGGTTGATAGTTAGACATACTTTTAATATTGTTCATATGAGGTTGACTGTAATGTTAGAACTGTTCATTATATTTTTTGTTCATATGGGGATGCCCGTATTATTCACAAGCTTGTAAGTTGTATATTTACAATGTTGAAGAAGTGAACTCTCTTGAAAAATATTGGTGAAAATTTTGTTGAAAATGTTGTTGAAA

mRNA sequence

ATGTTGAATAGTGAAGCTCACACCAACTCAAATGAAGCACGTGTTGGAAATTCATGGGAGAACTTTCAAAGTCAAACCAATGAAGAGACAATCATTATGACAAAAGCTAAAGCTAAAAGACTTCAAGATGGATTAAATGCTTGTTTACAAGCTAGATTTTTTGTCTTCAATAAAGAGTTTGAACTTCAAGATTCACTTGGACACCCAAGAGTGCTAAAAGCGGTGAGTTCGAGGTGTGCTACATTAATCTTGTGGAGATGGGAGCATAGTGAGAAAGATTTTGCTAGGATTACTTTATATGGGATTGATAGGTGAGTAATTTTTGGAATTTTTCATATGGGGCGAGGGGGTGTTGATTTTAGTTTTGGAAATGTGTTTATATGGGGGTTGATAGTTAGACATACTTTTAATATTGTTCATATGAGGTTGACTGTAATGTTAGAACTGTTCATTATATTTTTTGTTCATATGGGGATGCCCGTATTATTCACAAGCTTGTAAGTTGTATATTTACAATGTTGAAGAAGTGAACTCTCTTGAAAAATATTGGTGAAAATTTTGTTGAAAATGTTGTTGAAA

Coding sequence (CDS)

ATGTTGAATAGTGAAGCTCACACCAACTCAAATGAAGCACGTGTTGGAAATTCATGGGAGAACTTTCAAAGTCAAACCAATGAAGAGACAATCATTATGACAAAAGCTAAAGCTAAAAGACTTCAAGATGGATTAAATGCTTGTTTACAAGCTAGATTTTTTGTCTTCAATAAAGAGTTTGAACTTCAAGATTCACTTGGACACCCAAGAGTGCTAAAAGCGGTGAGTTCGAGGTGTGCTACATTAATCTTGTGGAGATGGGAGCATAGTGAGAAAGATTTTGCTAGGATTACTTTATATGGGATTGATAGGTGA

Protein sequence

MLNSEAHTNSNEARVGNSWENFQSQTNEETIIMTKAKAKRLQDGLNACLQARFFVFNKEFELQDSLGHPRVLKAVSSRCATLILWRWEHSEKDFARITLYGIDR
Homology
[Close]
BLAST of MELO3C031310.jh1 vs. NCBI nr
Match: TYK15114.1 (Zinc finger, CCHC-type [Cucumis melo var. makuwa])

HSP 1 Score: 98.6 bits (244), Expect = 1.57e-21
Identity = 53/81 (65.43%), Postives = 61/81 (75.31%), Query Frame = 0 

Query: 1   MLNSEAHTNSN----EARVGNSWENFQSQTNEETIIMT-----KAKAKRLQDGLNACLQA 60
           MLN+EA+TNSN    E    NSW N Q QTN+ETIIMT     KA+AKR +D LNACLQA
Sbjct: 369 MLNNEAYTNSNKEENETHAENSWGNIQIQTNQETIIMTQGSMTKARAKRFRDELNACLQA 428

Query: 61  RFFVFNKEFELQDSLGHPRVL 72
           RF VFNKE ELQ+SLGHPR++
Sbjct: 429 RFSVFNKELELQESLGHPRLI 449

[Close]
BLAST of MELO3C031310.jh1 vs. NCBI nr
Match: KAA0065903.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 98.6 bits (244), Expect = 1.85e-21
Identity = 53/81 (65.43%), Postives = 61/81 (75.31%), Query Frame = 0 

Query: 1   MLNSEAHTNSN----EARVGNSWENFQSQTNEETIIMT-----KAKAKRLQDGLNACLQA 60
           MLN+EA+TNSN    E    NSW N Q QTN+ETIIMT     KA+AKR +D LNACLQA
Sbjct: 405 MLNNEAYTNSNKEENETHAENSWGNIQIQTNQETIIMTQGSMTKARAKRFRDELNACLQA 464

Query: 61  RFFVFNKEFELQDSLGHPRVL 72
           RF VFNKE ELQ+SLGHPR++
Sbjct: 465 RFSVFNKELELQESLGHPRLI 485

[Close]
BLAST of MELO3C031310.jh1 vs. NCBI nr
Match: TYK19543.1 (Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 72.8 bits (177), Expect = 2.58e-12
Identity = 41/58 (70.69%), Postives = 43/58 (74.14%), Query Frame = 0 

Query: 1   MLNSEAHTNSNE----ARVGNSWENFQSQTNEETIIMT-----KAKAKRLQDGLNACL 49
           MLNSEAHTNSNE       GNSWEN QSQTN+E IIMT     KA+AKRLQD LNACL
Sbjct: 435 MLNSEAHTNSNEEENETHAGNSWENIQSQTNQEAIIMTQGSMTKARAKRLQDRLNACL 492

[Close]
BLAST of MELO3C031310.jh1 vs. NCBI nr
Match: TYK14528.1 (integrase [Cucumis melo var. makuwa])

HSP 1 Score: 61.2 bits (147), Expect = 1.80e-09
Identity = 35/51 (68.63%), Postives = 39/51 (76.47%), Query Frame = 0 

Query: 1   MLNSEAHTNSNE----ARVGNSWENFQSQTNEETII----MTKAKAKRLQD 43
           MLN+EAHTNSNE    A VGNSWENFQ QTN+E I+    MTKA+AK LQD
Sbjct: 61  MLNNEAHTNSNEKENEAHVGNSWENFQRQTNQEAIMAQCSMTKARAKILQD 111

[Close]
BLAST of MELO3C031310.jh1 vs. NCBI nr
Match: KAA0036753.1 (hypothetical protein E6C27_scaffold20G00320 [Cucumis melo var. makuwa] >TYJ95820.1 hypothetical protein E5676_scaffold110G001050 [Cucumis melo var. makuwa])

HSP 1 Score: 59.7 bits (143), Expect = 1.08e-07
Identity = 34/51 (66.67%), Postives = 36/51 (70.59%), Query Frame = 0 

Query: 1   MLNSEAHTNSNEARVGNSWENFQSQTNEETIIMT-----KAKAKRLQDGLN 46
           MLNSE     NE   GNSWEN QSQTN+E IIMT     KA+AKRLQDGLN
Sbjct: 784 MLNSEEE---NETHAGNSWENIQSQTNQEAIIMTQGSMTKARAKRLQDGLN 831

[Close]
BLAST of MELO3C031310.jh1 vs. ExPASy TrEMBL
Match: A0A5D3CW05 (Zinc finger, CCHC-type OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold259G00430 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 7.59e-22
Identity = 53/81 (65.43%), Postives = 61/81 (75.31%), Query Frame = 0 

Query: 1   MLNSEAHTNSN----EARVGNSWENFQSQTNEETIIMT-----KAKAKRLQDGLNACLQA 60
           MLN+EA+TNSN    E    NSW N Q QTN+ETIIMT     KA+AKR +D LNACLQA
Sbjct: 369 MLNNEAYTNSNKEENETHAENSWGNIQIQTNQETIIMTQGSMTKARAKRFRDELNACLQA 428

Query: 61  RFFVFNKEFELQDSLGHPRVL 72
           RF VFNKE ELQ+SLGHPR++
Sbjct: 429 RFSVFNKELELQESLGHPRLI 449

[Close]
BLAST of MELO3C031310.jh1 vs. ExPASy TrEMBL
Match: A0A5A7VCL9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold538G00820 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 8.94e-22
Identity = 53/81 (65.43%), Postives = 61/81 (75.31%), Query Frame = 0 

Query: 1   MLNSEAHTNSN----EARVGNSWENFQSQTNEETIIMT-----KAKAKRLQDGLNACLQA 60
           MLN+EA+TNSN    E    NSW N Q QTN+ETIIMT     KA+AKR +D LNACLQA
Sbjct: 405 MLNNEAYTNSNKEENETHAENSWGNIQIQTNQETIIMTQGSMTKARAKRFRDELNACLQA 464

Query: 61  RFFVFNKEFELQDSLGHPRVL 72
           RF VFNKE ELQ+SLGHPR++
Sbjct: 465 RFSVFNKELELQESLGHPRLI 485

[Close]
BLAST of MELO3C031310.jh1 vs. ExPASy TrEMBL
Match: A0A5D3D7R5 (Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold416G00380 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.25e-12
Identity = 41/58 (70.69%), Postives = 43/58 (74.14%), Query Frame = 0 

Query: 1   MLNSEAHTNSNE----ARVGNSWENFQSQTNEETIIMT-----KAKAKRLQDGLNACL 49
           MLNSEAHTNSNE       GNSWEN QSQTN+E IIMT     KA+AKRLQD LNACL
Sbjct: 435 MLNSEAHTNSNEEENETHAGNSWENIQSQTNQEAIIMTQGSMTKARAKRLQDRLNACL 492

[Close]
BLAST of MELO3C031310.jh1 vs. ExPASy TrEMBL
Match: A0A5D3CTJ1 (Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold552G00060 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 8.73e-10
Identity = 35/51 (68.63%), Postives = 39/51 (76.47%), Query Frame = 0 

Query: 1   MLNSEAHTNSNE----ARVGNSWENFQSQTNEETII----MTKAKAKRLQD 43
           MLN+EAHTNSNE    A VGNSWENFQ QTN+E I+    MTKA+AK LQD
Sbjct: 61  MLNNEAHTNSNEKENEAHVGNSWENFQRQTNQEAIMAQCSMTKARAKILQD 111

[Close]
BLAST of MELO3C031310.jh1 vs. ExPASy TrEMBL
Match: A0A5D3B744 (Integrase catalytic domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001050 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 5.25e-08
Identity = 34/51 (66.67%), Postives = 36/51 (70.59%), Query Frame = 0 

Query: 1   MLNSEAHTNSNEARVGNSWENFQSQTNEETIIMT-----KAKAKRLQDGLN 46
           MLNSE     NE   GNSWEN QSQTN+E IIMT     KA+AKRLQDGLN
Sbjct: 784 MLNSEEE---NETHAGNSWENIQSQTNQEAIIMTQGSMTKARAKRLQDGLN 831

The following BLAST results are available for this feature:
BLAST of MELO3C031310.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK15114.11.57e-2165.43Zinc finger, CCHC-type [Cucumis melo var. makuwa][more]
KAA0065903.11.85e-2165.43reverse transcriptase [Cucumis melo var. makuwa][more]
TYK19543.12.58e-1270.69Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa][more]
TYK14528.11.80e-0968.63integrase [Cucumis melo var. makuwa][more]
KAA0036753.11.08e-0766.67hypothetical protein E6C27_scaffold20G00320 [Cucumis melo var. makuwa] >TYJ95820... [more]
BLAST of MELO3C031310.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C031310.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CW057.59e-2265.43Zinc finger, CCHC-type OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2... [more]
A0A5A7VCL98.94e-2265.43Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold53... [more]
A0A5D3D7R51.25e-1270.69Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5D3CTJ18.73e-1068.63Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold552G00060 PE=4... [more]
A0A5D3B7445.25e-0866.67Integrase catalytic domain-containing protein OS=Cucumis melo var. makuwa OX=119... [more]
BLAST of MELO3C031310.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C031310.jh1.t1MELO3C031310.jh1.t1mRNA