MELO3C031275 (gene) Melon (DHL92) v4

Overview


Name	MELO3C031275
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Retrotrans_gag domain-containing protein
Location	chr08: 24878483 .. 24880631 (-)
RNA-Seq Expression	MELO3C031275
Synteny	MELO3C031275

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCAATTTGCAGAGAACATTTAAGAGAGAGTTTGGAAGAAGAAGAGAAATTTTACTAGAATTTTGAGGTTGAAGAAGAGGAGGAGAACTCAAGCAAAGTGTATCCATGGCTGAATTTTGGTTCATTATGCACATCAATGGTTTTTAATTCGATTTAAACTCTTCAAAAGGAATTAAGAGGTGAAGTTTACATTTACTGAAAGTTAACTCATTTTCAAACAAACTTTATGAAGAAAGTTGGAGCAAATTCGGATATTCATTGGGTACTTTTTGATGAAGAAAACAGGGTAGTTGGTTTTCACTCGAAATCAGGAGATCTCTGGTTTTTCTTGTATTTCAGAGTGTACCGATAGAGTTAGGATCTCTATTTAGTATGGTTGGAAAGCTTATTCAATTTAATACAATTTTCATGAAGAAATCAGGAACCAAAAATGACTAAAAATCAGTTAAATTGTAGGGACAAGTTAAAGAGGTCGTGTGCGTGTGATTCTGGAACTGGTTCTGTTTCGGGGGTTATCTGAGTTTCTTCATAGGGAATCAGATTTACATATCTTCAGGTAAGTTTTAAAGGATCTCAAAATGAAGATTTGGATATAAACAACACTCATTTTGGTTAAGTATTGAGAAAGTTATAGTCATATGAAGTTTATGTTAGAAATCTGGAAATTTCAAAGAGTTGTTGAAATAGGATTTTATTTCTTAAGCTTTGTTTTCGTGAGAGTCATCTTTGGTGCGACATGTTATGTATATCTTTAGAAAACCAGAATGTTTAGAGTTCTAATACTCGGTTGGGTTGTTGGCAGGCCGAGAAGAATTAAACCAAGCTTATAGACCAAGGATCTAGCCCAAGAAGGTGAGTGACAAAACCAACTTTGAAATATTTTCCATAACTGTTATTATGATTGAATGCGATAAATGTTTACTTACGAAGCGATGAAAGGTATTTGAATTTCATGACTATTTTCAAGTATACATTTAGAGACTAGATTTCTTAAAGAAATTTATGCTAACACGTAGATATTAAATGTTTGAAAAGTATTTAAACCACAATGTTTTAAGCAAAACATGAATTAGTAAGAAGTTTTGTTTTAAGAACTACAGTTTTTCACGAAAGAGCTGAGTAAAGTTCGAGCTTTGTGTAAAATTTATAAGCATGCATGTTTTAATATTTTTAGATGATTTATGAAATTTTCATTAACTACATGACTGAGATCTTGAGCCTGAGGCTAGAGATTACCGTGTGCACACTGGTTAAATTCTGTTGTTGACGTTGAGTGTACTCCGTAACAACGATGCTTTCATGAGTGTTGAGCGGGCCCCACTACGACAAAGACGATGGGAGTGCTGGATGGGTCCCACTACATCGTAAAGCTTGTAAACGTTGTTGTACTGGGTGTACCCTACACAACGTAGATTTGTCATGTTAATTAAAATTCTTCGATATACTTGATATGCCTTGCTAGATTTCAATGATGAACATGCTGAGTATTTAAGGATGCTATTCTTACTACTACATGTTTACATTTACGACTTGTATAAACAGATTTATATGTGTAAAGTTTTCACATGCTCTTATCTTTAAATTCATAGTTTTAAACTGAGTCACTCACTAAGCTTCATAGCTCACCCTTTCCAAAATGTTTTACCCATTTTCCAGGTAGAGATCGAGTTTCCGGTGCCTGATAGACTGCCTTAGTCTGCTGAAGCTCCATTATCGATTGCCAGTACGTGTTTTGAATTGGGCATAGAGTCTATTGTGTTATGATGCATATACACCCTTGTATGTTATAGATACTCCACAGTTTGTATAAGCTTTAGGAGCTGTAGTTGTGTAAATTTTTGTTGGTTATATTTTGATTAAGGTGTCTTTAGGTTTACTCATGAAATCGGTAAATTTTGAGGTACAGTTCATGTATGTGTTTGACTAGCCTAGGATCCGCTGTGTTTTGTTGCATGTATAATAGTTTATATACTAGATTGGCAAGTTCATCACATGAAAGTTTTAAGCAAAGTCGACAGATACAGGTACAGAAAAACGTTGTTCGTCGGCTTCACGCCATCTTTCGGTCTAAGGTAGCAGGTAGTCCGGAAGGATGTGTGACATTGGAAGTTTTGGTTGGTCGAGATAATGAAGAGGTGGAGTCCGTAAA

mRNA sequence

TTCAATTTGCAGAGAACATTTAAGAGAGAGTTTGGAAGAAGAAGAGGAGGAGAACTCAAGCAAAGTGTATCCATGGCTGAATTTTGGTTCATTATGCACATCAATGGTTTTTAATTCGATTTAAACTCTTCAAAAGGAATTAAGAGAAAACAGGGTAGTTGGTTTTCACTCGAAATCAGGAGATCTCTGGTTTTTCTTGTATTTCAGAGTGTACCGATAGAGTTAGGATCTCTATTTAGGACAAGTTAAAGAGGTCGTGTGCGTGTGATTCTGGAACTGGTTCTGTTTCGGGGGTTATCTGAGTTTCTTCATAGGGAATCAGATTTACATATCTTCAGAAATCTGGAAATTTCAAAGAGTTGTTGAAATAGGATTTTATTTCTTAAGCTTTGTTTTCGTGAGAGTCATCTTTGGTGCGACATGTTATATGATTTATGAAATTTTCATTAACTACATGACTGAGATCTTGAGCCTGAGGCTAGAGATTACCGTGTGCACACTGAGATCGAGTTTCCGGTGCCTGATAGACTGCCTTAGTCTGCTGAAGCTCCATTATCGATTGCCAGTGTCTTTAGGTTTACTCATGAAATCGGTAAATTTTGAGAGTCGACAGATACAGGTACAGAAAAACGTTGTTCGTCGGCTTCACGCCATCTTTCGGTCTAAGGTAGCAGGTAGTCCGGAAGGATGTGTGACATTGGAAGTTTTGGTTGGTCGAGATAATGAAGAGGTGGAGTCCGTAAA

Coding sequence (CDS)

ATGATTTATGAAATTTTCATTAACTACATGACTGAGATCTTGAGCCTGAGGCTAGAGATTACCGTGTGCACACTGAGATCGAGTTTCCGGTGCCTGATAGACTGCCTTAGTCTGCTGAAGCTCCATTATCGATTGCCAGTGTCTTTAGGTTTACTCATGAAATCGGTAAATTTTGAGAGTCGACAGATACAGGTACAGAAAAACGTTGTTCGTCGGCTTCACGCCATCTTTCGGTCTAAGGTAGCAGGTAGTCCGGAAGGATGTGTGACATTGGAAGTTTTGGTTGGTCGAGATAATGAAGAGGTGGAGTCCGTA

Protein sequence

MIYEIFINYMTEILSLRLEITVCTLRSSFRCLIDCLSLLKLHYRLPVSLGLLMKSVNFESRQIQVQKNVVRRLHAIFRSKVAGSPEGCVTLEVLVGRDNEEVESV

Homology

[Close]

BLAST of MELO3C031275 vs. NCBI nr
Match: KAA0037607.1 (uncharacterized protein E6C27_scaffold277G002620 [Cucumis melo var. makuwa])

HSP 1 Score: 96.7 bits (239), Expect = 1.3e-16
Identity = 66/116 (56.90%), Postives = 68/116 (58.62%), Query Frame = 0


Query: 10  MTEILSLRLEITVCTL-RSSFRCLIDCLSLLKLHYRLPVSLGLLMKSVNFE--------- 69
           MTEILSLRLEITV TL    F CLIDCLSL KLHYRLPVSLGLL+KSVNFE         
Sbjct: 1   MTEILSLRLEITVGTLVEIEFPCLIDCLSLRKLHYRLPVSLGLLVKSVNFEVHFMYVFDW 60

Query: 70  --------------------------------SRQIQVQKNVVRRLHAIFRSKVAG 84
                                           SRQIQVQK+VVRRLHAIFRSKVAG
Sbjct: 61  LCLTSLGSAVFCGMYNSLYTRLASSSHESFKQSRQIQVQKSVVRRLHAIFRSKVAG 116

[Close]

BLAST of MELO3C031275 vs. NCBI nr
Match: KAA0035073.1 (uncharacterized protein E6C27_scaffold57G001380 [Cucumis melo var. makuwa])

HSP 1 Score: 92.8 bits (229), Expect = 1.9e-15
Identity = 47/51 (92.16%), Postives = 50/51 (98.04%), Query Frame = 0


Query: 33  IDCLSLLKLHYRLPVSLGLLMKSVNFESRQIQVQKNVVRRLHAIFRSKVAG 84
           +DCLSL KLHYRLPVSLGLL+KSVNFESRQIQVQK+VVRRLHAIFRSKVAG
Sbjct: 151 VDCLSLRKLHYRLPVSLGLLVKSVNFESRQIQVQKSVVRRLHAIFRSKVAG 201

[Close]

BLAST of MELO3C031275 vs. NCBI nr
Match: KAA0042349.1 (uncharacterized protein E6C27_scaffold795G00510 [Cucumis melo var. makuwa] >TYK15472.1 uncharacterized protein E5676_scaffold477G00470 [Cucumis melo var. makuwa])

HSP 1 Score: 77.4 bits (189), Expect = 8.1e-11
Identity = 41/47 (87.23%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 44  RLPVSLGLLMKSVNFESRQIQVQKNVVRRLHAIFRSKVAGSPEGCVT 91
           R  VSLGLL+KSVNFESRQIQVQK+VVRRLHAIFRSKVAGSP G VT
Sbjct: 252 RSTVSLGLLVKSVNFESRQIQVQKSVVRRLHAIFRSKVAGSPGGGVT 298

[Close]

BLAST of MELO3C031275 vs. NCBI nr
Match: TYK31055.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 75.5 bits (184), Expect = 3.1e-10
Identity = 42/59 (71.19%), Postives = 48/59 (81.36%), Query Frame = 0


Query: 47  VSLGLLMKSVNFESRQIQVQKNVVRRLHAIFRSKVAGSPEGCVTLEVLVGRDNEEVESV 106
           VSLGLL+KSVNFESRQIQVQK+VV  LHAIFRSKVAGSPEG VT   +V  D+   +S+
Sbjct: 92  VSLGLLVKSVNFESRQIQVQKSVVHWLHAIFRSKVAGSPEGGVTKTQVVIPDDSVEDSL 150

[Close]

BLAST of MELO3C031275 vs. NCBI nr
Match: KAA0035470.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 75.5 bits (184), Expect = 3.1e-10
Identity = 42/59 (71.19%), Postives = 48/59 (81.36%), Query Frame = 0


Query: 47  VSLGLLMKSVNFESRQIQVQKNVVRRLHAIFRSKVAGSPEGCVTLEVLVGRDNEEVESV 106
           VSLGLL+KSVNFESRQIQVQK+VV  LHAIFRSKVAGSPEG VT   +V  D+   +S+
Sbjct: 469 VSLGLLVKSVNFESRQIQVQKSVVHWLHAIFRSKVAGSPEGGVTKTQVVIPDDSVEDSL 527

[Close]

BLAST of MELO3C031275 vs. ExPASy TrEMBL
Match: A0A5A7T7T0 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold277G002620 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 6.3e-17
Identity = 66/116 (56.90%), Postives = 68/116 (58.62%), Query Frame = 0


Query: 10  MTEILSLRLEITVCTL-RSSFRCLIDCLSLLKLHYRLPVSLGLLMKSVNFE--------- 69
           MTEILSLRLEITV TL    F CLIDCLSL KLHYRLPVSLGLL+KSVNFE         
Sbjct: 1   MTEILSLRLEITVGTLVEIEFPCLIDCLSLRKLHYRLPVSLGLLVKSVNFEVHFMYVFDW 60

Query: 70  --------------------------------SRQIQVQKNVVRRLHAIFRSKVAG 84
                                           SRQIQVQK+VVRRLHAIFRSKVAG
Sbjct: 61  LCLTSLGSAVFCGMYNSLYTRLASSSHESFKQSRQIQVQKSVVRRLHAIFRSKVAG 116

[Close]

BLAST of MELO3C031275 vs. ExPASy TrEMBL
Match: A0A5A7SX02 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold57G001380 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 9.0e-16
Identity = 47/51 (92.16%), Postives = 50/51 (98.04%), Query Frame = 0


Query: 33  IDCLSLLKLHYRLPVSLGLLMKSVNFESRQIQVQKNVVRRLHAIFRSKVAG 84
           +DCLSL KLHYRLPVSLGLL+KSVNFESRQIQVQK+VVRRLHAIFRSKVAG
Sbjct: 151 VDCLSLRKLHYRLPVSLGLLVKSVNFESRQIQVQKSVVRRLHAIFRSKVAG 201

[Close]

BLAST of MELO3C031275 vs. ExPASy TrEMBL
Match: A0A5A7TLX3 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G00470 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 3.9e-11
Identity = 41/47 (87.23%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 44  RLPVSLGLLMKSVNFESRQIQVQKNVVRRLHAIFRSKVAGSPEGCVT 91
           R  VSLGLL+KSVNFESRQIQVQK+VVRRLHAIFRSKVAGSP G VT
Sbjct: 252 RSTVSLGLLVKSVNFESRQIQVQKSVVRRLHAIFRSKVAGSPGGGVT 298

[Close]

BLAST of MELO3C031275 vs. ExPASy TrEMBL
Match: A0A5A7SWQ7 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold285G001170 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.5e-10
Identity = 42/59 (71.19%), Postives = 48/59 (81.36%), Query Frame = 0


Query: 47  VSLGLLMKSVNFESRQIQVQKNVVRRLHAIFRSKVAGSPEGCVTLEVLVGRDNEEVESV 106
           VSLGLL+KSVNFESRQIQVQK+VV  LHAIFRSKVAGSPEG VT   +V  D+   +S+
Sbjct: 469 VSLGLLVKSVNFESRQIQVQKSVVHWLHAIFRSKVAGSPEGGVTKTQVVIPDDSVEDSL 527

[Close]

BLAST of MELO3C031275 vs. ExPASy TrEMBL
Match: A0A5D3E6W6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G003130 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.5e-10
Identity = 42/59 (71.19%), Postives = 48/59 (81.36%), Query Frame = 0


Query: 47  VSLGLLMKSVNFESRQIQVQKNVVRRLHAIFRSKVAGSPEGCVTLEVLVGRDNEEVESV 106
           VSLGLL+KSVNFESRQIQVQK+VV  LHAIFRSKVAGSPEG VT   +V  D+   +S+
Sbjct: 92  VSLGLLVKSVNFESRQIQVQKSVVHWLHAIFRSKVAGSPEGGVTKTQVVIPDDSVEDSL 150

The following BLAST results are available for this feature:

BLAST of MELO3C031275 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0037607.1	1.3e-16	56.90	uncharacterized protein E6C27_scaffold277G002620 [Cucumis melo var. makuwa]	[more]
KAA0035073.1	1.9e-15	92.16	uncharacterized protein E6C27_scaffold57G001380 [Cucumis melo var. makuwa]	[more]
KAA0042349.1	8.1e-11	87.23	uncharacterized protein E6C27_scaffold795G00510 [Cucumis melo var. makuwa] >TYK1...	[more]
TYK31055.1	3.1e-10	71.19	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0035470.1	3.1e-10	71.19	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C031275 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C031275 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T7T0	6.3e-17	56.90	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7SX02	9.0e-16	92.16	CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]
A0A5A7TLX3	3.9e-11	87.23	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7SWQ7	1.5e-10	71.19	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold285G0011...	[more]
A0A5D3E6W6	1.5e-10	71.19	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G0031...	[more]

BLAST of MELO3C031275 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C031275.1	MELO3C031275.1	mRNA