MELO3C031233.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C031233.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Unknown protein
Location	chr05: 5552264 .. 5556075 (-)
RNA-Seq Expression	MELO3C031233.jh1
Synteny	MELO3C031233.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGGAGATATTTCCCGGCTTGTTTCGGCCCTAGCCGATGCGATTCCTTACACGACGACACGTCTAAGCTCGACAGTGACAAAATCATTTATGTAGCAAGGCTTCATTTGCCCGCCTCCGTTTCTTTTCTCAGCCCCCTTATTGGCAGATCTAAGCCCGCTCATAACAATCGTGTAAGGAGTTCCTCAACCTCGGAATATGTCACTACTACCAAAATCCGGTCACATTTTCACTTTTCTATATATTCAACTCTTTTTTTGTGGTTGGATAGGAATTAGGAAGTCATGATTTTGAATTCTATATTATCTGATAATGATCTAATATAGTTATTGTTTACGTTTTGCCTTCATTTAGTTATTGTAATTGTGTAATTATTATCTTTTTCCTTCATTCGCATGCATTAACTAACTGGAACTCTTGGGGATTCCGTCTCTATTACTCGCAAGAAGAGTAAAATTACCATAAATTTGGACAGCAACTTCTTCCAGAGGTATATATATATTTTTTTTCTCCTTTTGAATCTATAGTTTGTTTCGAATCTGAAGTTCTATTTTGAATGTGGGTTTTGTATATGACAAAGTTTGTATAGTAGTTAAGTATGAAAATGAGTCACTAGGTTGAAGATTTATTACTTATTAGCATTTTGAATGTTTACAAAATATTAGTTATTGTGTGATAAATCAATGTATATCGTGTTTGGATTTTATTCCAGGGTGTTTTAGATTTGTTATGATAAGGAAAAAAAAATTAGGTTTCTTATGTTTGAAACAGAATACACTTGGATTCCATTTGTAGAATGAGGATTCACATTTATGACTGTGTAACTAATTCTAAAATTAGACATGTGTGTTTGATTTTTACTTTGGGTAAACAATTTGAAAGTTCCTATTATAAAACTTGTCCCATCTTTTCAGCAAATTAATTGCCATTCTTATAAGTTTTTCAACACTTGGAGTCAAAGAAGATGTTTTTAGATGCTTTGTTGGTTGCTTTGAGAGTTAAATTGTCACGTAGATACTTTTTAGGAACCTTTAGTGTTGGTTTGTCCTATTATGTTGCATTTAGTAGCATTATAATTATGCTTCCATTTAGTATCATTATTGTTGTGCTTCAAGGATGGTTCTAGAAATTCTTCATACTTTTTGGTTTCTTGTACATTTCATTTATTCAATGAAAGTTTGCTTACGAATTTAGAAGAAATAGATAGATGTACAACACACATATTTGTGCCATATTTTTTATCTTAGTTCTTCCCTAGAGGTCGAATAAGCATGTTATGATGGTTTTCAAATTTCTAACTTATTTGCATATGTAGGTTTTTTTACCCTAATTGTGGATGCATCAACGACAAGTTTGACTTCCCTTGATTCTCGTAGAATTTGTACTTTGCTCTTTAATATCTGCTGTATTAGTTCAATGTTTGCATATGTGTGAATTCATGGAAAGCAACTTCTTTTATAATAACTAATGATTTTTTTCTTTTTCCATTTTAGACTTGTTTAAGCAAAGGTGGATGCTTCTACTTCCCACCATGTCATATGCTTAATGTTTGTGGGTTTTGAATCCAATTTGTATATGTGTGGACTTTTCAACTCTCTTTAAATATTAGTTCGATGCTTGCATATGTGCAAATTCAAGGTAAGCATTATTAACTAATATATAGCAGGTATATTAAGAAACAACCAACAAATTAAAATGGTCATTTTCTTAAAGGATGCTCTAGGAAAATCTTTAGAGGAGATTTTTTTTTTTTTATCTAATTATGCTCTAAGAAAATCTTGACTTATACTGACATTTTTCTAAAAGCATCAAAATATGTTTTTTTATTGTCTGAGTTAAACAGATTTGGAAATCAACGTTGGTTTTATTTATTTACTTTTGAAATGGCAGACAATAATTAAGGAAGAAGACCTAGAAACAGTCTTACCACAAGAAGCAATACTCAAATCTTATTTATTGATTATGAGAGTTATGAGCAAAACAAGAACATGAGTATGTTTATTTGTTCTAGTTTATGCTCTTCTTTTGTCATTTTCTTAGAATTTTCTTGTTTCTATATTGTATTGGTATATATTTCTGAATAACGAAGGAGGTTGTTGGTGGTGGAAAGAAGAAAGATCAATAAAGAGATTTTTGGTGTTGTGGTTAAAATTTTGTTGAAGGTATTTTTGGTGGCTGCTGATTTCTTGTTTTGGAAGGTATTTTTTTAAAAAAATAATATCTCCTGATGCACTTGTGTGTAGTGTCAGGAGATCCTATACAACTTCCGACATAGTATGGGAGTTGTATAGGATCTTCCGACGCTGAAAATTGCATCGAGAGTTGTCAAGATCTCCCGATGTTGCGTTTAATTAGTGCATCAAGAGATCCTCTCTCACGCAATTCGTCCGAACCCTGTCCTGATGTATATTTATGCATCAGGAAATCTTTTTCAAAGCATTTTCGTATATCTCTCGATGATTTTGTGCTTCGAGAGGTTCAAAATTTCTTGTAGGATGATACAAAATTTTAGTATCTATCCATGATTGTGAGACCTGAGTCTAGAATAGGGAAATAAAAGTTTGATTATAAGAGTTATTTTTTAAAGTAGGTTTTTTAAAGATTTAGGCATTTTTTAGTTGGCGTTGAAGCTAGGCGACGCCATGAGAAAGGTATGCGTTCAAGCCTTATCAACGTCAAAAGAGTTAGGCGTTTGGTGTTGTAACGTGAGATGAAGTCAGATGAGGAAAGTTAAGTATTTTGAGGAAATATCTAATTTTGATTTGACAGTAGATTACATGTTGAGTTTATATTAAGCATGGTCTTGGAAGCTAAGTAAACTGAGACGTGTTGAGTTCTAAGTAGGAGTTGGTGAGCTAAGAGAAGCTTATGGTTGATTAAACCAACTTTAGGATCAGTATAAATAGGAGTGAAGGATCTAAAGAAAGTGTTGTTATTTTGAGATTTTGCTTAGAAAAAATACTAACTGCTAAGCTGTTAAGGAAGTGTTAAGCAAGAAGAAGAGTCTTGGACTATGTGTTCAAAGAAGGAAAGAAGCTAAATATTTTGTGAGTGATTTTCTAAAAGAAAGAATAGTGTTTAGAAAGCATTCTTTCTGAGTCTTTATGTTGTTATGAAATGTTTAATGTGTATTGTAATGCTGTTGATATGTATACTTGATTATTGAAAAGGAAGTTTGTAAACTAAAGTTTCTATGTGATATTGATTGTATGTATGTATGTATGTGAGTAAGTCATTAACTTTATTCCTATCAAATGAGCTAGCAATTATGTGCATATAATGAGTAAAGGAAACCATGGAGTGCAAGGACCACATGACGTTAAGAAGCTGGCCAAAGTGTTGAAAGGAGTGTATTGAGTTAGCAACCTAAGAACATAAAAATGAACTAGGAAATTGTCTAAGGGGTGTTGGTGAAGTGAATCTCAATAGTTTATGCGTTGGAAAGTTCATGTCTTTGGCGAAAAAGAATAAGTAGAGGCTAACGTGTGATTTATGATTTATGATGTTAAATGAGGCTATGAGAGCCTGTTTATGAAAATGAATTTGTTGATTGTATTGTATTTACCCAAAAGGTTTTTCAAAATATCACTCACTAAATATTTGATTACGTGTTAAGTTTCCCTTCTCCAGGTAGCCAGGTGTTCACACCAAGCAAAGAAGGGTAAGGTGAGCTACTACGCGTTAAGGTGTTAGCCAGGCGTTTTAAGTGTGGACTATGCTAGGCGTTGGGAGCCTTTTACTTATAGTTCTTGTATTTAAGAAAGCTTGTATTGTATATTTGGAACATATGTTGTTGAGTAATAATGAAG

mRNA sequence

ATGGAAGGAGATATTTCCCGGCTTGTTTCGGCCCTAGCCGATGCGATTCCTTACACGACGACACGTCTAAGCTCGACAACTTGTTTAAGCAAAGGTGGATGCTTCTACTTCCCACCATGTCATATGCTTAATGTATTTTTGGTGGCTGCTGATTTCTTGTTTTGGAAGTTGGCGTTGAAGCTAGGCGACGCCATGAGAAAGGTAGCCAGGTGTTCACACCAAGCAAAGAAGGGTAAGGTGAGCTACTACGCGTTAAGGTGTTAGCCAGGCGTTTTAAGTGTGGACTATGCTAGGCGTTGGGAGCCTTTTACTTATAGTTCTTGTATTTAAGAAAGCTTGTATTGTATATTTGGAACATATGTTGTTGAGTAATAATGAAG

Coding sequence (CDS)

ATGGAAGGAGATATTTCCCGGCTTGTTTCGGCCCTAGCCGATGCGATTCCTTACACGACGACACGTCTAAGCTCGACAACTTGTTTAAGCAAAGGTGGATGCTTCTACTTCCCACCATGTCATATGCTTAATGTATTTTTGGTGGCTGCTGATTTCTTGTTTTGGAAGTTGGCGTTGAAGCTAGGCGACGCCATGAGAAAGGTAGCCAGGTGTTCACACCAAGCAAAGAAGGGTAAGGTGAGCTACTACGCGTTAAGGTGTTAG

Protein sequence

MEGDISRLVSALADAIPYTTTRLSSTTCLSKGGCFYFPPCHMLNVFLVAADFLFWKLALKLGDAMRKVARCSHQAKKGKVSYYALRC

Homology

[Close]

BLAST of MELO3C031233.jh1 vs. NCBI nr
Match: XP_038890023.1 (integrator complex subunit 9 isoform X1 [Benincasa hispida])

HSP 1 Score: 51.2 bits (121), Expect = 5.46e-05
Identity = 20/20 (100.00%), Postives = 20/20 (100.00%), Query Frame = 0


Query: 27 TCLSKGGCFYFPPCHMLNVF 46
          TCLSKGGCFYFPPCHMLNVF
Sbjct: 4  TCLSKGGCFYFPPCHMLNVF 23

[Close]

BLAST of MELO3C031233.jh1 vs. ExPASy TrEMBL
Match: A0A1S3BTR4 (integrator complex subunit 9 homolog isoform X2 OS=Cucumis melo OX=3656 GN=LOC103493437 PE=3 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 8.07e-04
Identity = 18/19 (94.74%), Postives = 18/19 (94.74%), Query Frame = 0


Query: 27 TCLSKGGCFYFPPCHMLNV 45
          TCLSKGGCFY PPCHMLNV
Sbjct: 4  TCLSKGGCFYLPPCHMLNV 22

[Close]

BLAST of MELO3C031233.jh1 vs. ExPASy TrEMBL
Match: A0A1S4DZC1 (integrator complex subunit 9 homolog isoform X1 OS=Cucumis melo OX=3656 GN=LOC103493437 PE=3 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 8.23e-04
Identity = 18/19 (94.74%), Postives = 18/19 (94.74%), Query Frame = 0


Query: 27 TCLSKGGCFYFPPCHMLNV 45
          TCLSKGGCFY PPCHMLNV
Sbjct: 4  TCLSKGGCFYLPPCHMLNV 22

[Close]

BLAST of MELO3C031233.jh1 vs. ExPASy TrEMBL
Match: A0A5D3DT52 (Integrator complex subunit 9-like protein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2133G00230 PE=3 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 8.23e-04
Identity = 18/19 (94.74%), Postives = 18/19 (94.74%), Query Frame = 0


Query: 27 TCLSKGGCFYFPPCHMLNV 45
          TCLSKGGCFY PPCHMLNV
Sbjct: 4  TCLSKGGCFYLPPCHMLNV 22

The following BLAST results are available for this feature:

BLAST of MELO3C031233.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038890023.1	5.46e-05	100.00	integrator complex subunit 9 isoform X1 [Benincasa hispida]	[more]

BLAST of MELO3C031233.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C031233.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BTR4	8.07e-04	94.74	integrator complex subunit 9 homolog isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S4DZC1	8.23e-04	94.74	integrator complex subunit 9 homolog isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A5D3DT52	8.23e-04	94.74	Integrator complex subunit 9-like protein isoform X1 OS=Cucumis melo var. makuwa...	[more]

BLAST of MELO3C031233.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C031233.jh1.t1	MELO3C031233.jh1.t1	mRNA