MELO3C031228 (gene) Melon (DHL92) v4

Overview
NameMELO3C031228
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionPre-mRNA-processing factor 39 isoform X3
Locationchr05: 16674542 .. 16674808 (-)
RNA-Seq ExpressionMELO3C031228
SyntenyMELO3C031228
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGGAATGTACACAAGGTAGTCGTAGGCAAGAGAAGAGGTAGAGACGTTGTATGAAGAAGATGAAGACGAGCACGGTGACACCCTATGTGGGGCATGCAGTGAGAACTATGCTTCAGATGAATTTTGGATTTGGTGTGATATCTGTGAGAAATGGTTCAATGAAAAATTTGTTGTATGAAGAAATGCTTCAATTTATCAATTTTCTTGCGATGTATTGAGTTTTCTAAAACAAGGTAGTTGTTTTTTGTTTAGGTTTGTTCTCAAAG

mRNA sequence

AAGGAATGTACACAAGGTAGTCGTAGGCAAGAGAAGAGGTAGAGACGTTGTATGAAGAAGATGAAGACGAGCACGGTGACACCCTATGTGGGGCATGCAGTGAGAACTATGCTTCAGATGAATTTTGGATTTGGTGTGATATCTGTGAGAAATGGTTCAATGAAAAATTTGTTGTATGAAGAAATGCTTCAATTTATCAATTTTCTTGCGATGTATTGAGTTTTCTAAAACAAGGTAGTTGTTTTTTGTTTAGGTTTGTTCTCAAAG

Coding sequence (CDS)

ATGAAGAAGATGAAGACGAGCACGGTGACACCCTATGTGGGGCATGCAGTGAGAACTATGCTTCAGATGAATTTTGGATTTGGTGTGATATCTGTGAGAAATGGTTCAATGAAAAATTTGTTGTATGAAGAAATGCTTCAATTTATCAATTTTCTTGCGATGTATTGA

Protein sequence

MKKMKTSTVTPYVGHAVRTMLQMNFGFGVISVRNGSMKNLLYEEMLQFINFLAMY
Homology
BLAST of MELO3C031228 vs. NCBI nr
Match: TYK10342.1 (uncharacterized protein E5676_scaffold367G00170 [Cucumis melo var. makuwa])

HSP 1 Score: 97.8 bits (242), Expect = 3.0e-17
Identity = 48/55 (87.27%), Postives = 51/55 (92.73%), Query Frame = 0

Query: 1  MKKMKTSTVTPYVGHAVRTMLQMNFGFGVISVRNGSMKNLLYEEMLQFINFLAMY 56
          MKKMKTSTVTPYVGH VRT+LQMNFGF VIS+RNGSM NLLYEEMLQFI+FL MY
Sbjct: 14 MKKMKTSTVTPYVGHVVRTVLQMNFGFAVISMRNGSMGNLLYEEMLQFISFLVMY 68

BLAST of MELO3C031228 vs. NCBI nr
Match: KAA0058974.1 (hypothetical protein E6C27_scaffold98G001610 [Cucumis melo var. makuwa] >TYK11007.1 hypothetical protein E5676_scaffold874G00450 [Cucumis melo var. makuwa])

HSP 1 Score: 78.6 bits (192), Expect = 1.9e-11
Identity = 39/41 (95.12%), Postives = 39/41 (95.12%), Query Frame = 0

Query: 1  MKKMKTSTVTPYVGHAVRTMLQMNFGFGVISVRNGSMKNLL 42
          MKKMKTSTVTPYVGHAVRTMLQMNFGF VISVRNGSM NLL
Sbjct: 24 MKKMKTSTVTPYVGHAVRTMLQMNFGFAVISVRNGSMGNLL 64

BLAST of MELO3C031228 vs. NCBI nr
Match: XP_016903219.1 (PREDICTED: uncharacterized protein LOC103502427 isoform X2 [Cucumis melo] >KAA0039695.1 pre-mRNA-processing factor 39 isoform X3 [Cucumis melo var. makuwa] >TYJ96187.1 pre-mRNA-processing factor 39 isoform X3 [Cucumis melo var. makuwa])

HSP 1 Score: 68.9 bits (167), Expect = 1.5e-08
Identity = 33/42 (78.57%), Postives = 36/42 (85.71%), Query Frame = 0

Query: 14  GHAVRTMLQMNFGFGVISVRNGSMKNLLYEEMLQFINFLAMY 56
           GH +RTMLQMNFGF VI VRNGS  NLLYEEMLQFI+FL +Y
Sbjct: 97  GHVMRTMLQMNFGFAVIFVRNGSTGNLLYEEMLQFISFLVVY 138

BLAST of MELO3C031228 vs. NCBI nr
Match: XP_016903218.1 (PREDICTED: uncharacterized protein LOC103502427 isoform X1 [Cucumis melo])

HSP 1 Score: 68.9 bits (167), Expect = 1.5e-08
Identity = 33/42 (78.57%), Postives = 36/42 (85.71%), Query Frame = 0

Query: 14  GHAVRTMLQMNFGFGVISVRNGSMKNLLYEEMLQFINFLAMY 56
           GH +RTMLQMNFGF VI VRNGS  NLLYEEMLQFI+FL +Y
Sbjct: 103 GHVMRTMLQMNFGFAVIFVRNGSTGNLLYEEMLQFISFLVVY 144

BLAST of MELO3C031228 vs. ExPASy TrEMBL
Match: A0A5D3CGG9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00170 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.5e-17
Identity = 48/55 (87.27%), Postives = 51/55 (92.73%), Query Frame = 0

Query: 1  MKKMKTSTVTPYVGHAVRTMLQMNFGFGVISVRNGSMKNLLYEEMLQFINFLAMY 56
          MKKMKTSTVTPYVGH VRT+LQMNFGF VIS+RNGSM NLLYEEMLQFI+FL MY
Sbjct: 14 MKKMKTSTVTPYVGHVVRTVLQMNFGFAVISMRNGSMGNLLYEEMLQFISFLVMY 68

BLAST of MELO3C031228 vs. ExPASy TrEMBL
Match: A0A5A7UV27 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold874G00450 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 9.2e-12
Identity = 39/41 (95.12%), Postives = 39/41 (95.12%), Query Frame = 0

Query: 1  MKKMKTSTVTPYVGHAVRTMLQMNFGFGVISVRNGSMKNLL 42
          MKKMKTSTVTPYVGHAVRTMLQMNFGF VISVRNGSM NLL
Sbjct: 24 MKKMKTSTVTPYVGHAVRTMLQMNFGFAVISVRNGSMGNLL 64

BLAST of MELO3C031228 vs. ExPASy TrEMBL
Match: A0A5D3BAP5 (Pre-mRNA-processing factor 39 isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold261G00140 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 7.3e-09
Identity = 33/42 (78.57%), Postives = 36/42 (85.71%), Query Frame = 0

Query: 14  GHAVRTMLQMNFGFGVISVRNGSMKNLLYEEMLQFINFLAMY 56
           GH +RTMLQMNFGF VI VRNGS  NLLYEEMLQFI+FL +Y
Sbjct: 97  GHVMRTMLQMNFGFAVIFVRNGSTGNLLYEEMLQFISFLVVY 138

BLAST of MELO3C031228 vs. ExPASy TrEMBL
Match: A0A1S4E4Q8 (uncharacterized protein LOC103502427 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502427 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 7.3e-09
Identity = 33/42 (78.57%), Postives = 36/42 (85.71%), Query Frame = 0

Query: 14  GHAVRTMLQMNFGFGVISVRNGSMKNLLYEEMLQFINFLAMY 56
           GH +RTMLQMNFGF VI VRNGS  NLLYEEMLQFI+FL +Y
Sbjct: 103 GHVMRTMLQMNFGFAVIFVRNGSTGNLLYEEMLQFISFLVVY 144

BLAST of MELO3C031228 vs. ExPASy TrEMBL
Match: A0A1S4E4R6 (uncharacterized protein LOC103502427 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103502427 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 7.3e-09
Identity = 33/42 (78.57%), Postives = 36/42 (85.71%), Query Frame = 0

Query: 14  GHAVRTMLQMNFGFGVISVRNGSMKNLLYEEMLQFINFLAMY 56
           GH +RTMLQMNFGF VI VRNGS  NLLYEEMLQFI+FL +Y
Sbjct: 97  GHVMRTMLQMNFGFAVIFVRNGSTGNLLYEEMLQFISFLVVY 138

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK10342.13.0e-1787.27uncharacterized protein E5676_scaffold367G00170 [Cucumis melo var. makuwa][more]
KAA0058974.11.9e-1195.12hypothetical protein E6C27_scaffold98G001610 [Cucumis melo var. makuwa] >TYK1100... [more]
XP_016903219.11.5e-0878.57PREDICTED: uncharacterized protein LOC103502427 isoform X2 [Cucumis melo] >KAA00... [more]
XP_016903218.11.5e-0878.57PREDICTED: uncharacterized protein LOC103502427 isoform X1 [Cucumis melo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CGG91.5e-1787.27Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7UV279.2e-1295.12Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BAP57.3e-0978.57Pre-mRNA-processing factor 39 isoform X3 OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A1S4E4Q87.3e-0978.57uncharacterized protein LOC103502427 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A1S4E4R67.3e-0978.57uncharacterized protein LOC103502427 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C031228.1MELO3C031228.1mRNA