MELO3C031221.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C031221.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionUbiquitin-NEDD8-like protein RUB2
Locationchr05: 5294585 .. 5296657 (-)
RNA-Seq ExpressionMELO3C031221.jh1
SyntenyMELO3C031221.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGGCGAGGGCAACGGTGGCGAGGGTTGATATTTTCTCCTCTCTTCGTTTTGTCGGCCAAGCTTTCCTCTTCCTCTTTCTCTTTTGTGTCGATTCTGTGTTTTACAGAACTGAAACATCTTTTTTATATGGGAACTCCTAGTGCAGCACAAAAATATCGGGAGCTCCCCTTACTCCCAACACCATTCCTAACGAATCACTAATGGCATCGGAAGCTCTCCTTACTCCCAACGTCATTCTCGACGAATCACTAGTGACGTTAGAAGCTATCCTTACTCCCAATGCCATGCAGGAGGTATCGAGAATCTCTATCTGACATAGTCAATGTAAAAATTTTCGACTAAGAGTTCTTGACGCGTGCATGAGATGTCGGGATAAGGTAATTATTTTCAACGCCTTACCTCCAGATGCTGAAAATGTGGTCTTGTTTTCCAACGACTCTATCACGGCGTCAGAAAAAGTTAATAATAAAATAATATTTTTGCCTTTGCCCGATGTATGAAAAGCGGCGTCGAGGGAAGGTGTATGTCCCGACGTTGTTTCCTTCGACGCATTTCTTTGCGTCGGAAAAATCTCGATTTCTTGTAGTGATTTTTTGTATTAAAGAAAAGCCATTTGTGATGAACATGAACTATCTCATTGTGTTAATAATTTGAAGATCTTATTTATGGATCTTCAGTTGGCTAAAAAAGAAATAGACCCTTAAAGCCTCATGTCATATTGAAAACTTAAGTCTTCTTTTTCTTTTTTGTGTGGTAGGATCAGGATGTAAGAAGTTAGCAAATGATGATAGCTACACCAGTTACCCCATACCAAATACCTCCTCCGAAGTCAGTTGGTAAGAAATTAATATACTACTGTTGTAACTAGTGTCTTTTCTCCTTTCTCCTTAGAGAAGTAGTATTTAAAATCCTTTAATCTTTTTTTTTTTTATATGACACCAAGAACTTAACGTTTATTATGCTTTCAGGAACATTAATCTATCTTTAAAATTGAGACTAGTCTTTAGTTTTGCATTTTGGTGGCTACAAAGTTTCTTTTCAATCATGTTAGGTTTTGTTTTCTTACTAGGTTTTGTAAGAATCCATTAGAGTAATGAAATCATATTGGAGCAACTGACTGATGATTGTACTATTTCCTGATTTTTTTGTCATTGTTGTGCAAGGGTCAAGCTAATCTTTCAGTTCCAATTTTATTGTATGTTGCGGACCATAGTAGATTGGAATAGAACATTTGAAGTGTGAAAGGAAATTCCAGAAAATGATTATACCTTTTAGTAATTTTGTTATCTGTGGCTGTTGTTTCTTTCCTAATTTTGGTCTTTCTATTTTTTAAACTCCCTTGCATTGTTCCACGTGCATCCATAAACTATTATTCATTCAGTAATTGCATCTGAAAAATGCATCATTCATTCAGTAACTCCCTTCCACTGGTTTTGGTTGAATTAGCCGATTATGCATATGAAAAAAGTCTTGAGGTTGACATTGAGCCAATTGACATAATTAATCATATTAAGGAGCGAGTTGAGGAGAAAGAGGGGATTCCCCCTGTACAACAAAGGTTTGTGTTTGACTCCTTTAATTACTTAATCTACAATAACTATATTTTCTATGGCCTTTTAAATTCTTAGGCTTTTTAGAACTGTGAACTGGCCATGTATCCACCTAAAGCTGCACCTTTTCTCCATTACAAGTTGGTTTATGTAACTGAAATAATGTTTAATTGTCATTTATAATTGATAAATGGAAAATTTTGTAATTTTGTAACATATTTGGTTTTGTACAATAATCCTTCGTTTTACTCAGTTGTGCAGCTGATTTTTTCGGTAGTCCATCTCGCCCCCAACTAGTTGCTCTTGTGGCCCAAGTAAGATGAAACTAGAATTGATTTATACGCCTTTTTTTTAGGGTTGGTAGCAAAATTTTGTTTGAAATGTACTTATTTAAATAGCTTGTTGGTACCAAAACATGTATGTTTATTCTATTATTGTAAACTCTTTACCAAGAATTGTACAAATATTACAAAGTGTATATTAACGTGTATATATTATAGCGTTGATTGTTTATTTCTA

mRNA sequence

ATGACGGCGAGGGCAACGGTGGCGAGGGTTGATATTTTCTCCTCTCTTCGTTTTGTCGGCCAAGCTTTCCTCTTCCTCTTTCTCTTTTGTGTCGATTCTGTCACAAAAATATCGGGAGCTCCCCTTACTCCCAACACCATTCCTAACGAATCACTAATGGCATCGGAAGCTCTCCTTACTCCCAACGTCATTCTCGACGAATCACTAGTGACGTTAGAAGCTATCCTTACTCCCAATGCCATGCAGGAGATGCTGAAAATGTGGTCTTGTTTTCCAACGACTCTATCACGGCGATCAGGATGTAAGAAGTTAGCAAATGATGATAGCTACACCAGTTACCCCATACCAAATACCTCCTCCGAAGGTCAAGCTAATCTTTCAGTTCCAATTTTATTTAACTCCCTTCCACTGGTTTTGGTTGAATTAGCCGATTATGCATATGAAAAAAGTCTTGAGGTTGACATTGAGCCAATTGACATAATTAATCATATTAAGGAGCGAGTTGAGGAGAAAGAGGGGATTCCCCCTGTACAACAAAGTTGTGCAGCTGATTTTTTCGGTAGTCCATCTCGCCCCCAACTAGTTGCTCTTGTGGCCCAAGTAAGATGAAACTAGAATTGATTTATACGCCTTTTTTTTAGGGTTGGTAGCAAAATTTTGTTTGAAATGTACTTATTTAAATAGCTTGTTGGTACCAAAACATGTATGTTTATTCTATTATTGTAAACTCTTTACCAAGAATTGTACAAATATTACAAAGTGTATATTAACGTGTATATATTATAGCGTTGATTGTTTATTTCTA

Coding sequence (CDS)

ATGACGGCGAGGGCAACGGTGGCGAGGGTTGATATTTTCTCCTCTCTTCGTTTTGTCGGCCAAGCTTTCCTCTTCCTCTTTCTCTTTTGTGTCGATTCTGTCACAAAAATATCGGGAGCTCCCCTTACTCCCAACACCATTCCTAACGAATCACTAATGGCATCGGAAGCTCTCCTTACTCCCAACGTCATTCTCGACGAATCACTAGTGACGTTAGAAGCTATCCTTACTCCCAATGCCATGCAGGAGATGCTGAAAATGTGGTCTTGTTTTCCAACGACTCTATCACGGCGATCAGGATGTAAGAAGTTAGCAAATGATGATAGCTACACCAGTTACCCCATACCAAATACCTCCTCCGAAGGTCAAGCTAATCTTTCAGTTCCAATTTTATTTAACTCCCTTCCACTGGTTTTGGTTGAATTAGCCGATTATGCATATGAAAAAAGTCTTGAGGTTGACATTGAGCCAATTGACATAATTAATCATATTAAGGAGCGAGTTGAGGAGAAAGAGGGGATTCCCCCTGTACAACAAAGTTGTGCAGCTGATTTTTTCGGTAGTCCATCTCGCCCCCAACTAGTTGCTCTTGTGGCCCAAGTAAGATGA

Protein sequence

MTARATVARVDIFSSLRFVGQAFLFLFLFCVDSVTKISGAPLTPNTIPNESLMASEALLTPNVILDESLVTLEAILTPNAMQEMLKMWSCFPTTLSRRSGCKKLANDDSYTSYPIPNTSSEGQANLSVPILFNSLPLVLVELADYAYEKSLEVDIEPIDIINHIKERVEEKEGIPPVQQSCAADFFGSPSRPQLVALVAQVR
Homology
[Close]
BLAST of MELO3C031221.jh1 vs. NCBI nr
Match: PWZ13070.1 (Ubiquitin-NEDD8-like protein RUB2, partial [Zea mays])

HSP 1 Score: 57.4 bits (137), Expect = 9.02e-07
Identity = 26/38 (68.42%), Postives = 31/38 (81.58%), Query Frame = 0 

Query: 149 KSLEVDIEPIDIINHIKERVEEKEGIPPVQQSCAADFF 186
           K +E+DIEP D I+ IKERVEEKEGIPPVQQ   AD++
Sbjct: 73  KEIEIDIEPTDSIDRIKERVEEKEGIPPVQQRYHADYY 110

[Close]
BLAST of MELO3C031221.jh1 vs. NCBI nr
Match: PRQ44848.1 (putative magnesium-dependent phosphatase-1, eukaryotic/archaeal type, ubiquitin [Rosa chinensis])

HSP 1 Score: 54.7 bits (130), Expect = 2.36e-06
Identity = 25/31 (80.65%), Postives = 27/31 (87.10%), Query Frame = 0 

Query: 149 KSLEVDIEPIDIINHIKERVEEKEGIPPVQQ 179
           K +E+DIEP D IN IKERVEEKEGIPPVQQ
Sbjct: 10  KEIEIDIEPTDTINRIKERVEEKEGIPPVQQ 40

[Close]
BLAST of MELO3C031221.jh1 vs. NCBI nr
Match: KAF5190628.1 (Ubiquitin-nedd8-like protein rub2 [Thalictrum thalictroides])

HSP 1 Score: 54.7 bits (130), Expect = 2.79e-06
Identity = 25/31 (80.65%), Postives = 28/31 (90.32%), Query Frame = 0 

Query: 149 KSLEVDIEPIDIINHIKERVEEKEGIPPVQQ 179
           K +E+DIEP DII+ IKERVEEKEGIPPVQQ
Sbjct: 10  KEIEIDIEPTDIIDRIKERVEEKEGIPPVQQ 40

[Close]
BLAST of MELO3C031221.jh1 vs. NCBI nr
Match: XP_022773834.1 (ubiquitin-NEDD8-like protein RUB2 isoform X3 [Durio zibethinus])

HSP 1 Score: 54.7 bits (130), Expect = 2.86e-06
Identity = 25/31 (80.65%), Postives = 28/31 (90.32%), Query Frame = 0 

Query: 149 KSLEVDIEPIDIINHIKERVEEKEGIPPVQQ 179
           K +E+DIEP DII+ IKERVEEKEGIPPVQQ
Sbjct: 10  KEIEIDIEPTDIIDRIKERVEEKEGIPPVQQ 40

[Close]
BLAST of MELO3C031221.jh1 vs. NCBI nr
Match: KAF5185685.1 (Ubiquitin-nedd8-like protein rub1 [Thalictrum thalictroides])

HSP 1 Score: 54.7 bits (130), Expect = 2.86e-06
Identity = 25/31 (80.65%), Postives = 28/31 (90.32%), Query Frame = 0 

Query: 149 KSLEVDIEPIDIINHIKERVEEKEGIPPVQQ 179
           K +E+DIEP DII+ IKERVEEKEGIPPVQQ
Sbjct: 10  KEIEIDIEPTDIIDRIKERVEEKEGIPPVQQ 40

[Close]
BLAST of MELO3C031221.jh1 vs. ExPASy Swiss-Prot
Match: Q9SHE7 (Ubiquitin-NEDD8-like protein RUB1 OS=Arabidopsis thaliana OX=3702 GN=RUB1 PE=1 SV=3)

HSP 1 Score: 52.4 bits (124), Expect = 7.1e-06
Identity = 24/31 (77.42%), Postives = 27/31 (87.10%), Query Frame = 0 

Query: 149 KSLEVDIEPIDIINHIKERVEEKEGIPPVQQ 180
           K +E+DIEP D I+ IKERVEEKEGIPPVQQ
Sbjct: 87  KEIEIDIEPTDTIDRIKERVEEKEGIPPVQQ 117

[Close]
BLAST of MELO3C031221.jh1 vs. ExPASy Swiss-Prot
Match: P0C030 (Ubiquitin-NEDD8-like protein RUB1 OS=Oryza sativa subsp. japonica OX=39947 GN=RUB1 PE=2 SV=2)

HSP 1 Score: 52.4 bits (124), Expect = 7.1e-06
Identity = 24/31 (77.42%), Postives = 27/31 (87.10%), Query Frame = 0 

Query: 149 KSLEVDIEPIDIINHIKERVEEKEGIPPVQQ 180
           K +E+DIEP D I+ IKERVEEKEGIPPVQQ
Sbjct: 87  KEIEIDIEPTDTIDRIKERVEEKEGIPPVQQ 117

[Close]
BLAST of MELO3C031221.jh1 vs. ExPASy Swiss-Prot
Match: Q8RUC6 (Ubiquitin-NEDD8-like protein RUB2 OS=Arabidopsis thaliana OX=3702 GN=RUB2 PE=1 SV=3)

HSP 1 Score: 52.4 bits (124), Expect = 7.1e-06
Identity = 24/31 (77.42%), Postives = 27/31 (87.10%), Query Frame = 0 

Query: 149 KSLEVDIEPIDIINHIKERVEEKEGIPPVQQ 180
           K +E+DIEP D I+ IKERVEEKEGIPPVQQ
Sbjct: 87  KEIEIDIEPTDTIDRIKERVEEKEGIPPVQQ 117

[Close]
BLAST of MELO3C031221.jh1 vs. ExPASy Swiss-Prot
Match: P0C031 (Ubiquitin-NEDD8-like protein RUB2 OS=Oryza sativa subsp. japonica OX=39947 GN=RUB2 PE=2 SV=2)

HSP 1 Score: 52.4 bits (124), Expect = 7.1e-06
Identity = 24/31 (77.42%), Postives = 27/31 (87.10%), Query Frame = 0 

Query: 149 KSLEVDIEPIDIINHIKERVEEKEGIPPVQQ 180
           K +E+DIEP D I+ IKERVEEKEGIPPVQQ
Sbjct: 87  KEIEIDIEPTDTIDRIKERVEEKEGIPPVQQ 117

[Close]
BLAST of MELO3C031221.jh1 vs. ExPASy Swiss-Prot
Match: P0C073 (Ubiquitin-NEDD8-like protein RUB1 OS=Deschampsia antarctica OX=159298 GN=RUB1 PE=2 SV=2)

HSP 1 Score: 52.0 bits (123), Expect = 9.2e-06
Identity = 23/31 (74.19%), Postives = 27/31 (87.10%), Query Frame = 0 

Query: 149 KSLEVDIEPIDIINHIKERVEEKEGIPPVQQ 180
           K +E+DIEP D I+ +KERVEEKEGIPPVQQ
Sbjct: 87  KEIEIDIEPTDTIDRVKERVEEKEGIPPVQQ 117

[Close]
BLAST of MELO3C031221.jh1 vs. ExPASy TrEMBL
Match: A0A3L6DWR2 (Ubiquitin-NEDD8-like protein RUB2 (Fragment) OS=Zea mays OX=4577 GN=RUB2_0 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 4.37e-07
Identity = 26/38 (68.42%), Postives = 31/38 (81.58%), Query Frame = 0 

Query: 149 KSLEVDIEPIDIINHIKERVEEKEGIPPVQQSCAADFF 186
           K +E+DIEP D I+ IKERVEEKEGIPPVQQ   AD++
Sbjct: 73  KEIEIDIEPTDSIDRIKERVEEKEGIPPVQQRYHADYY 110

[Close]
BLAST of MELO3C031221.jh1 vs. ExPASy TrEMBL
Match: A0A2P6REJ7 (Putative magnesium-dependent phosphatase-1, eukaryotic/archaeal type, ubiquitin OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr3g0483741 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.14e-06
Identity = 25/31 (80.65%), Postives = 27/31 (87.10%), Query Frame = 0 

Query: 149 KSLEVDIEPIDIINHIKERVEEKEGIPPVQQ 179
           K +E+DIEP D IN IKERVEEKEGIPPVQQ
Sbjct: 10  KEIEIDIEPTDTINRIKERVEEKEGIPPVQQ 40

[Close]
BLAST of MELO3C031221.jh1 vs. ExPASy TrEMBL
Match: A0A7J6W1I7 (Ubiquitin-nedd8-like protein rub2 OS=Thalictrum thalictroides OX=46969 GN=FRX31_019785 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.35e-06
Identity = 25/31 (80.65%), Postives = 28/31 (90.32%), Query Frame = 0 

Query: 149 KSLEVDIEPIDIINHIKERVEEKEGIPPVQQ 179
           K +E+DIEP DII+ IKERVEEKEGIPPVQQ
Sbjct: 10  KEIEIDIEPTDIIDRIKERVEEKEGIPPVQQ 40

[Close]
BLAST of MELO3C031221.jh1 vs. ExPASy TrEMBL
Match: A0A7J6VND2 (Ubiquitin-nedd8-like protein rub1 OS=Thalictrum thalictroides OX=46969 GN=FRX31_024728 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.39e-06
Identity = 25/31 (80.65%), Postives = 28/31 (90.32%), Query Frame = 0 

Query: 149 KSLEVDIEPIDIINHIKERVEEKEGIPPVQQ 179
           K +E+DIEP DII+ IKERVEEKEGIPPVQQ
Sbjct: 10  KEIEIDIEPTDIIDRIKERVEEKEGIPPVQQ 40

[Close]
BLAST of MELO3C031221.jh1 vs. ExPASy TrEMBL
Match: A0A6P6B9C7 (ubiquitin-NEDD8-like protein RUB2 isoform X3 OS=Durio zibethinus OX=66656 GN=LOC111316082 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.39e-06
Identity = 25/31 (80.65%), Postives = 28/31 (90.32%), Query Frame = 0 

Query: 149 KSLEVDIEPIDIINHIKERVEEKEGIPPVQQ 179
           K +E+DIEP DII+ IKERVEEKEGIPPVQQ
Sbjct: 10  KEIEIDIEPTDIIDRIKERVEEKEGIPPVQQ 40

[Close]
BLAST of MELO3C031221.jh1 vs. TAIR 10
Match: AT1G31340.1 (related to ubiquitin 1 )

HSP 1 Score: 52.4 bits (124), Expect = 5.0e-07
Identity = 24/31 (77.42%), Postives = 27/31 (87.10%), Query Frame = 0 

Query: 149 KSLEVDIEPIDIINHIKERVEEKEGIPPVQQ 180
           K +E+DIEP D I+ IKERVEEKEGIPPVQQ
Sbjct: 87  KEIEIDIEPTDTIDRIKERVEEKEGIPPVQQ 117

[Close]
BLAST of MELO3C031221.jh1 vs. TAIR 10
Match: AT2G35635.1 (ubiquitin 7 )

HSP 1 Score: 52.4 bits (124), Expect = 5.0e-07
Identity = 24/31 (77.42%), Postives = 27/31 (87.10%), Query Frame = 0 

Query: 149 KSLEVDIEPIDIINHIKERVEEKEGIPPVQQ 180
           K +E+DIEP D I+ IKERVEEKEGIPPVQQ
Sbjct: 87  KEIEIDIEPTDTIDRIKERVEEKEGIPPVQQ 117

[Close]
BLAST of MELO3C031221.jh1 vs. TAIR 10
Match: AT1G11980.1 (ubiquitin-related protein 3 )

HSP 1 Score: 45.1 bits (105), Expect = 8.0e-05
Identity = 20/32 (62.50%), Postives = 25/32 (78.12%), Query Frame = 0 

Query: 148 EKSLEVDIEPIDIINHIKERVEEKEGIPPVQQ 180
           EK ++++IE  D I  IKER+EEKEGIPPV Q
Sbjct: 10  EKQIDIEIELTDTIERIKERIEEKEGIPPVHQ 41

The following BLAST results are available for this feature:
BLAST of MELO3C031221.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
PWZ13070.19.02e-0768.42Ubiquitin-NEDD8-like protein RUB2, partial [Zea mays][more]
PRQ44848.12.36e-0680.65putative magnesium-dependent phosphatase-1, eukaryotic/archaeal type, ubiquitin ... [more]
KAF5190628.12.79e-0680.65Ubiquitin-nedd8-like protein rub2 [Thalictrum thalictroides][more]
XP_022773834.12.86e-0680.65ubiquitin-NEDD8-like protein RUB2 isoform X3 [Durio zibethinus][more]
KAF5185685.12.86e-0680.65Ubiquitin-nedd8-like protein rub1 [Thalictrum thalictroides][more]
BLAST of MELO3C031221.jh1 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9SHE77.1e-0677.42Ubiquitin-NEDD8-like protein RUB1 OS=Arabidopsis thaliana OX=3702 GN=RUB1 PE=1 S... [more]
P0C0307.1e-0677.42Ubiquitin-NEDD8-like protein RUB1 OS=Oryza sativa subsp. japonica OX=39947 GN=RU... [more]
Q8RUC67.1e-0677.42Ubiquitin-NEDD8-like protein RUB2 OS=Arabidopsis thaliana OX=3702 GN=RUB2 PE=1 S... [more]
P0C0317.1e-0677.42Ubiquitin-NEDD8-like protein RUB2 OS=Oryza sativa subsp. japonica OX=39947 GN=RU... [more]
P0C0739.2e-0674.19Ubiquitin-NEDD8-like protein RUB1 OS=Deschampsia antarctica OX=159298 GN=RUB1 PE... [more]
BLAST of MELO3C031221.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A3L6DWR24.37e-0768.42Ubiquitin-NEDD8-like protein RUB2 (Fragment) OS=Zea mays OX=4577 GN=RUB2_0 PE=4 ... [more]
A0A2P6REJ71.14e-0680.65Putative magnesium-dependent phosphatase-1, eukaryotic/archaeal type, ubiquitin ... [more]
A0A7J6W1I71.35e-0680.65Ubiquitin-nedd8-like protein rub2 OS=Thalictrum thalictroides OX=46969 GN=FRX31_... [more]
A0A7J6VND21.39e-0680.65Ubiquitin-nedd8-like protein rub1 OS=Thalictrum thalictroides OX=46969 GN=FRX31_... [more]
A0A6P6B9C71.39e-0680.65ubiquitin-NEDD8-like protein RUB2 isoform X3 OS=Durio zibethinus OX=66656 GN=LOC... [more]
BLAST of MELO3C031221.jh1 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G31340.15.0e-0777.42related to ubiquitin 1 [more]
AT2G35635.15.0e-0777.42ubiquitin 7 [more]
AT1G11980.18.0e-0562.50ubiquitin-related protein 3 [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.10.20.90coord: 141..184
e-value: 6.8E-6
score: 28.1

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C031221.jh1.t1MELO3C031221.jh1.t1mRNA