MELO3C031133 (gene) Melon (DHL92) v4

Overview
NameMELO3C031133
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionCharged multivesicular body protein 7 isoform X1
Locationchr05: 9215439 .. 9215819 (+)
RNA-Seq ExpressionMELO3C031133
SyntenyMELO3C031133
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCGTAGCCCTCCTCCCACTCTCATCTTCTTCTTCTTCGAAATCACACGCCCCTCACCGCCCCTACCTCTCTTCTCTCCATCGAGATCTCCGACGAAAATCTCCCTTCATTTGTCGAAGCCGCCACCGTCACCTTAGTGTTTCCTGTCAAGCTTTTGTTCGTCGTTAGCCTAAGCTGCCACACCCCGAGCCGCTCTCCTTTCCGTCAACCATCTCCTCTGCGTCGCGATGTTCCGATCTAAAGTGAGCGGACTGTGTTTGCTCCAATCGGTGTTTGTTCGCGAAGCTCCGATCGCCGTCGTCGCATCTCCACGAATCCAGCCGCCGCCATCACGATCTCCCATTCGCGTGGAGCTTGTTGCACCATCCATCCTTCTCTATAG

mRNA sequence

CCGTAGCCCTCCTCCCACTCTCATCTTCTTCTTCTTCGAAATCACACGCCCCTCACCGCCCCTACCTCTCTTCTCTCCATCGAGATCTCCGACGAAAATCTCCCTTCATTTGTCGAAGCCGCCACCGTCACCTTAGTGTTTCCTGTCAAGCTTTTGTTCGTCGTTAGCCTAAGCTGCCACACCCCGAGCCGCTCTCCTTTCCGTCAACCATCTCCTCTGCGTCGCGATGTTCCGATCTAAAGTGAGCGGACTGTGTTTGCTCCAATCGGTGTTTGTTCGCGAAGCTCCGATCGCCGTCGTCGCATCTCCACGAATCCAGCCGCCGCCATCACGATCTCCCATTCGCGTGGAGCTTGTTGCACCATCCATCCTTCTCTATAG

Coding sequence (CDS)

ATGTTCCGATCTAAAGTGAGCGGACTGTGTTTGCTCCAATCGGTGTTTGTTCGCGAAGCTCCGATCGCCGTCGTCGCATCTCCACGAATCCAGCCGCCGCCATCACGATCTCCCATTCGCGTGGAGCTTGTTGCACCATCCATCCTTCTCTAT

Protein sequence

MFRSKVSGLCLLQSVFVREAPIAVVASPRIQPPPSRSPIRVELVAPSILLY
Homology
BLAST of MELO3C031133 vs. NCBI nr
Match: KAA0059932.1 (GPI mannosyltransferase 1-like isoform X1 [Cucumis melo var. makuwa] >TYK24878.1 GPI mannosyltransferase 1-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 71.2 bits (173), Expect = 2.8e-09
Identity = 38/49 (77.55%), Postives = 41/49 (83.67%), Query Frame = 0

Query: 2   FRSKVSGLCLLQSVFVREAPIAVVASPRIQPPPSRSPIRVELVAPSILL 51
           F SK SGLCLLQ +FV EA  AVVASPR Q PPSRSPIR+E+VAPSILL
Sbjct: 245 FGSKASGLCLLQPMFVHEASTAVVASPRTQLPPSRSPIRMEIVAPSILL 293

BLAST of MELO3C031133 vs. NCBI nr
Match: KAA0062299.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 69.3 bits (168), Expect = 1.1e-08
Identity = 36/47 (76.60%), Postives = 40/47 (85.11%), Query Frame = 0

Query: 4    SKVSGLCLLQSVFVREAPIAVVASPRIQPPPSRSPIRVELVAPSILL 51
            S+VSGLCLLQ VF+ EA I VV SPR +PPPSRSPI +ELVAPSILL
Sbjct: 970  SEVSGLCLLQPVFIHEASIVVVTSPRTKPPPSRSPICMELVAPSILL 1016

BLAST of MELO3C031133 vs. NCBI nr
Match: TYK03645.1 (charged multivesicular body protein 7 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 68.2 bits (165), Expect = 2.4e-08
Identity = 35/50 (70.00%), Postives = 39/50 (78.00%), Query Frame = 0

Query: 1   MFRSKVSGLCLLQSVFVREAPIAVVASPRIQPPPSRSPIRVELVAPSILL 51
           MF  K SGLCLLQ +FV E P  V+ SPR QP PSRSPIR+EL+APSILL
Sbjct: 103 MFGFKASGLCLLQPMFVYEVPTVVLTSPRTQPMPSRSPIRMELIAPSILL 152

BLAST of MELO3C031133 vs. NCBI nr
Match: KAA0050041.1 (charged multivesicular body protein 7 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 66.2 bits (160), Expect = 9.1e-08
Identity = 34/50 (68.00%), Postives = 39/50 (78.00%), Query Frame = 0

Query: 1   MFRSKVSGLCLLQSVFVREAPIAVVASPRIQPPPSRSPIRVELVAPSILL 51
           MFR K SGLCLLQ +FV E+P  V+  PR QP  SRSPIR+EL+APSILL
Sbjct: 103 MFRFKASGLCLLQPMFVYESPTVVLTPPRTQPMSSRSPIRMELIAPSILL 152

BLAST of MELO3C031133 vs. ExPASy TrEMBL
Match: A0A5D3DMR1 (GPI mannosyltransferase 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold184G001490 PE=3 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.4e-09
Identity = 38/49 (77.55%), Postives = 41/49 (83.67%), Query Frame = 0

Query: 2   FRSKVSGLCLLQSVFVREAPIAVVASPRIQPPPSRSPIRVELVAPSILL 51
           F SK SGLCLLQ +FV EA  AVVASPR Q PPSRSPIR+E+VAPSILL
Sbjct: 245 FGSKASGLCLLQPMFVHEASTAVVASPRTQLPPSRSPIRMEIVAPSILL 293

BLAST of MELO3C031133 vs. ExPASy TrEMBL
Match: A0A5A7V9C3 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G00450 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 5.2e-09
Identity = 36/47 (76.60%), Postives = 40/47 (85.11%), Query Frame = 0

Query: 4    SKVSGLCLLQSVFVREAPIAVVASPRIQPPPSRSPIRVELVAPSILL 51
            S+VSGLCLLQ VF+ EA I VV SPR +PPPSRSPI +ELVAPSILL
Sbjct: 970  SEVSGLCLLQPVFIHEASIVVVTSPRTKPPPSRSPICMELVAPSILL 1016

BLAST of MELO3C031133 vs. ExPASy TrEMBL
Match: A0A5D3BX22 (Charged multivesicular body protein 7 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1369G00750 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.2e-08
Identity = 35/50 (70.00%), Postives = 39/50 (78.00%), Query Frame = 0

Query: 1   MFRSKVSGLCLLQSVFVREAPIAVVASPRIQPPPSRSPIRVELVAPSILL 51
           MF  K SGLCLLQ +FV E P  V+ SPR QP PSRSPIR+EL+APSILL
Sbjct: 103 MFGFKASGLCLLQPMFVYEVPTVVLTSPRTQPMPSRSPIRMELIAPSILL 152

BLAST of MELO3C031133 vs. ExPASy TrEMBL
Match: A0A5A7U8W2 (Charged multivesicular body protein 7 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00170 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 4.4e-08
Identity = 34/50 (68.00%), Postives = 39/50 (78.00%), Query Frame = 0

Query: 1   MFRSKVSGLCLLQSVFVREAPIAVVASPRIQPPPSRSPIRVELVAPSILL 51
           MFR K SGLCLLQ +FV E+P  V+  PR QP  SRSPIR+EL+APSILL
Sbjct: 103 MFRFKASGLCLLQPMFVYESPTVVLTPPRTQPMSSRSPIRMELIAPSILL 152

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0059932.12.8e-0977.55GPI mannosyltransferase 1-like isoform X1 [Cucumis melo var. makuwa] >TYK24878.1... [more]
KAA0062299.11.1e-0876.60pol protein [Cucumis melo var. makuwa][more]
TYK03645.12.4e-0870.00charged multivesicular body protein 7 isoform X1 [Cucumis melo var. makuwa][more]
KAA0050041.19.1e-0868.00charged multivesicular body protein 7 isoform X1 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3DMR11.4e-0977.55GPI mannosyltransferase 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A5A7V9C35.2e-0976.60Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G00450 PE... [more]
A0A5D3BX221.2e-0870.00Charged multivesicular body protein 7 isoform X1 OS=Cucumis melo var. makuwa OX=... [more]
A0A5A7U8W24.4e-0868.00Charged multivesicular body protein 7 isoform X1 OS=Cucumis melo var. makuwa OX=... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C031133.1MELO3C031133.1mRNA