MELO3C031083 (gene) Melon (DHL92) v4

Overview
NameMELO3C031083
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
Descriptionprotein LATERAL ROOT PRIMORDIUM 1-like
Locationchr05: 1368209 .. 1372103 (+)
RNA-Seq ExpressionMELO3C031083
SyntenyMELO3C031083
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTTTGAATCTCTTATCTATCGGTTTCGTGGAGCCAACATTCGGTTAGTGAACCTGTGTCGATTTTGCTCTATTTTATTTGTCAGATTCGTAACAATTTTCGGCGTTTAATTTTTTTTCCTCAATTCGCGGTGGCAGATGTCGGCAATAAAGAGGCACTACCGGGGCAAATACGAGCACAGGCGGTGTTCAAGTGCGTGAGAGTGACGGCGGTGGACGACGGCGACGACGAGTATGCGTATCATGCGATGGTGAAAATTGGGGGCCATGTGTTCAAAGGATTTTTGTACGATCAAGGCGTTGAAGCCGGAGACGGATTTCCTAATGTATCAGAATTGCATTTAGGTGACGGTGTCGGTGGCGGTGGAACCATAAATAATCGGAATGGTTCGTCTTCTTCTCCGCTTGTTGATCCGTCGGATGTTTACAATACTGCCGCCTCCGGCAGCGGCGGCGTTCCGGGTTTTCTTGGTGGATCAAATTATGGTAATCAAATTAGTTGATATATATTATTCTGATTTTCTTAACAGTTCAACGTGCTTCCCCAAATCAATGGGAAGGGAACTAACCAATTATCTTTAGAAAATCTCATTTTATTTATGTCTAATCTGATTGTGTATAACTAATTTCTCTCAACTCTGATCTTGCAACTTTCATTATTAATCGAGTCATTTACTAATCTGGGGGCATCTGTTCTTGAAAATGTTATGAGGATTGGTATCTCTTCTTGCATGCTTCTTATTCTTTTCTTGACTTACAAATCTTCTTGTCTAGGCTAAATCTACAGTGTTTGTTGGTTATTTTATTGCTTAAAATTAGATGAAATCATAGGGATGTGAGTCATCTTATCTTGTGTTCATATTTGTCTTGTGTGCTCTTACTGTTCACTCATGTGCCTAACAATTTATTGTTTTTCAAAGCAATCTCATTTGATACTATCTGCTTTTTTTTAAAAAAAAAAAAAAAAACTTGTAATAGTTTAGTTTAATCATGTGGGGGTTTCTGTTGATGGGTATGGAAATATATTCCTAACCTCTGTTGGGTTGGCTTTTTCTTTTTGGTTGGTTTGCTTCTTCGGGAGCTGGAAATGCTGAATTCCATTGTTAGGTGATGGATTTAGCCTTTGGTTTTCTCAAAGCTGCTGAGGTGTCACAATCATAAGATGTTTGAGAAAATGATAACTTTGAAAATGATGTCTTTTTCCCCTTCACTATTCCACTTCTTTTAGTCCACTAACATGTCTTGTTCATTCTTGCTTCTGTTGTATATCTTTTGTGTCCAATTTTGATTTATTGATTGTAAGTTTATGTTCTATATCCTAGAAAACTTCATACTCTACCTATCAATCTTTCTTTCCTCCCTTCTAAATCAATTGTTTCTCTCGTTTCTCGTGCACCGGTTTTCATTTTGCTTCCTTGTTTACCATGCCTTTTTGCTGGGATAATTGCCATCATCATTTCATGTATATATTGTTTGAAGATATGATATTAAATCTGGATTCGCAGGATGGTTGATGTAGAATTAATTTGACACGCCATGTTGTGTATTTATTGTTGACATTTTAGCATCTATTTTGTCTGATGCTAATAGGGCAACAGTCCTTTGAAATGCTGAGTAAGCCCCTTTTGTTTGTTTTAAATAAAAAATTGAAATAATCCATTGTTGTTTGCCATTGTTGACCTAATTCATTTATTATAACAAAGTGGCCTACACATTGAATGCTTGCATTGCGCTTGTTTTAAATGAGGAGTGGATAGATTTTCTCCTTGGATTTCTTTAAGTATTTTCCCAGTGTTGGTACCTTTGGGAACAATCTTAACCTTTGCTCCACCTGCACATTCTGATTGTTCTGTCTGTATTTGAGCATTGAGATGCCACTGCCAGGCTTAAGGGATTAGGAAGCTTAATAATCAAATCTCCATAATGGGAGGATAAGTATTTGTTTTTTTTTTTTGTTTTGTAGTAATTTGAAATTAAGGTTTAAATATTTGATTGATTAGTTCCACTTGCGATTTCTTTATTTCTTGCACATGCATAAAATAGTGGCTTTATTTTTCCTGGATTTCTGGTTTCAACCTTTGGATATTAATATAGGCATGGGGTGAACAATTTTCTTGAAGTATAGAAGAACAAATATTTATTAGGCCTTACTATTTTGTTTTTCTATAGCTGTCGGTGTTCGAGTGGGTTAGGCTTACTTTGGCTAATCTCTCTTGACATTGCGATACTTTAATACATATGGATGTCAAGGAATCTTGTAGGATATTCAACTTTATGTCGATGGTCACCATGATTGAGACTCCGACTCTTTGGTCCCTTAGACCTTAATTTATTTGAATTTATATTTATAGGCTTTCTTCTCTATAGTAAATGGAAAGATATTCCTCCTTTGCTTGCGAGGGCTCATTTATTATACTCTTCCCTTTACATTTTATTTATTTTAATTTATTTTTTGTGTGTAATTATTGCCTTTGGTGCTTCCATTTAGTGGTGTGTTCAGTGTTTCCCAGTTTAGCTAGTCTAAATATTTCACCTACTCCATGAAAAATTGGAGAGTAAGCCTTTTTGTGTATTCATCAAGTCCTCTCTTGCATCCAGGGAGCCAACTAGTTTCATATCATATGTGCTTCTATATCAATTTCATTCCATCTCTTAGACCATTCTTTACTCTAGTCTTGCTCGTTTTATTGCTCGTGTGAAGGAAATTTCAGCCTATAATGCATCTGTATCTCGTTTTACTTTAATTTTGTTCGTTTAATTTGTAACTTTGTGATGTTTTGCATTTGGTTGCATCGTACGGAGTTGTTTTAGATTTGATTTATATGATATTGGAATTAGTTTTTATGTACTGATAAATGACGACACTTATTGCCCTAAAATCGATCTCTCTGATTTATCTTTTTCACACCAAATGTTGTCTTTTTATCTGTGTTTTTTGTGATTTTATGTATGAGGTCTTTTCTTTCTTGTTTGTAGTGGAAGACTTAGGTGTATATTTGTTTCGTTTTTTTGATCGAGACATTATTTTGCTCGTAAAATGAGCTTTGTGAAAGTCTTAAAAAGGAACAATGAAAGAAAATAGAGAGAATTCTATATTTACTTCTCTGAATTCTTTTTCCATTTTGTTTTCACTTTTTTTGTTACCTCTTAATTTGAGTGCAAAATTGACTCTTTTCTATCCTTCAATTTCCTAATTAAGTTGAAGGTTCTTTTTAAATTATTAATCATTACCCATTTTTCTACTTACAGGTATTTAGGGTTTTAGTTGTATACGCTAATCGAATCAATTTTGATGGTGTGAAAAATAACGTACGTCTTTTGAGCAGTGGAAGACATGATGTTATTTAATTAATCAAGGACATAATCTATATGTTTGGATTAAGAATATGGGTTTTTAAGGATTCGATTGCATGATGAATGGTTGATGTTGCATCTCTAAGTGAATATCACTTTTGTATCAACTTTTAAACGTAGTCTATTATTCTTTTCTATAGCTGAATTGACCTTTTGCTATTTTTGTTTTGTTTTCCATCGAAATTTCTCTACGCTTTTCCAACTGTTAGACAAAGTGTTATTGAAGATTTGATTGATTTTTTAGGCTTTTGTTTGGTATTATTTTTCCCTTTGTTTAAGCTGTCTGTCTGTATATGTATAAATATATACTGCTTTTATTTATTGGTTTCTTTGTATTATTGTCTTTTCAACCAGTCTTTTCGTAAGCAAATATTGTGTTTGAATAACACGGATCAGAGTGGATAGGATCGTGCCATCGAGTTAGATGGCTTAGTCGTGAGGCTATGGGTCGTGAGCTTCATGATCTCTTTCCCAAGTTGACGAGGCCGGAAGGAAAAGGGGTGCAAGTGAATTATCATAAGTTTAAAGAGATTTTTTGA

mRNA sequence

ATGCCTTTGAATCTCTTATCTATCGGTTTCGTGGAGCCAACATTCGATGTCGGCAATAAAGAGGCACTACCGGGGCAAATACGAGCACAGGCGGTGTTCAAGTGCGTGAGAGTGACGGCGGTGGACGACGGCGACGACGAGTATGCGTATCATGCGATGGTGAAAATTGGGGGCCATGTGTTCAAAGGATTTTTGTACGATCAAGGCGTTGAAGCCGGAGACGGATTTCCTAATGTATCAGAATTGCATTTAGGTGACGGTGTCGGTGGCGGTGGAACCATAAATAATCGGAATGGTTCGTCTTCTTCTCCGCTTGTTGATCCGTCGGATGTTTACAATACTGCCGCCTCCGGCAGCGGCGGCGTTCCGGGTTTTCTTGGTGGATCAAATTATGGCTTTCTTCTCTATAAGTGGATAGGATCGTGCCATCGAGTTAGATGGCTTAGTCGTGAGGCTATGGGTCGTGAGCTTCATGATCTCTTTCCCAAGTTGACGAGGCCGGAAGGAAAAGGGGTGCAAGTGAATTATCATAAGTTTAAAGAGATTTTTTGA

Coding sequence (CDS)

ATGCCTTTGAATCTCTTATCTATCGGTTTCGTGGAGCCAACATTCGATGTCGGCAATAAAGAGGCACTACCGGGGCAAATACGAGCACAGGCGGTGTTCAAGTGCGTGAGAGTGACGGCGGTGGACGACGGCGACGACGAGTATGCGTATCATGCGATGGTGAAAATTGGGGGCCATGTGTTCAAAGGATTTTTGTACGATCAAGGCGTTGAAGCCGGAGACGGATTTCCTAATGTATCAGAATTGCATTTAGGTGACGGTGTCGGTGGCGGTGGAACCATAAATAATCGGAATGGTTCGTCTTCTTCTCCGCTTGTTGATCCGTCGGATGTTTACAATACTGCCGCCTCCGGCAGCGGCGGCGTTCCGGGTTTTCTTGGTGGATCAAATTATGGCTTTCTTCTCTATAAGTGGATAGGATCGTGCCATCGAGTTAGATGGCTTAGTCGTGAGGCTATGGGTCGTGAGCTTCATGATCTCTTTCCCAAGTTGACGAGGCCGGAAGGAAAAGGGGTGCAAGTGAATTATCATAAGTTTAAAGAGATTTTTTGA

Protein sequence

MPLNLLSIGFVEPTFDVGNKEALPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHVFKGFLYDQGVEAGDGFPNVSELHLGDGVGGGGTINNRNGSSSSPLVDPSDVYNTAASGSGGVPGFLGGSNYGFLLYKWIGSCHRVRWLSREAMGRELHDLFPKLTRPEGKGVQVNYHKFKEIF
Homology
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BLAST of MELO3C031083 vs. NCBI nr
Match: XP_008449660.1 (PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like isoform X3 [Cucumis melo])

HSP 1 Score: 240.0 bits (611), Expect = 1.6e-59
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0 

Query: 16  DVGNKEALPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHVFKGFLYDQGVEAGDG 75
           DVGNKEALPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHVFKGFLYDQGVEAGDG
Sbjct: 246 DVGNKEALPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHVFKGFLYDQGVEAGDG 305

Query: 76  FPNVSELHLGDGVGGGGTINNRNGSSSSPLVDPSDVYNTAASGSGGVPGFLGGSNYG 133
           FPNVSELHLGDGVGGGGTINNRNGSSSSPLVDPSDVYNTAASGSGGVPGFLGGSNYG
Sbjct: 306 FPNVSELHLGDGVGGGGTINNRNGSSSSPLVDPSDVYNTAASGSGGVPGFLGGSNYG 362

[Close]
BLAST of MELO3C031083 vs. NCBI nr
Match: KAA0061772.1 (protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 [Cucumis melo var. makuwa] >TYJ96114.1 protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 240.0 bits (611), Expect = 1.6e-59
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0 

Query: 16  DVGNKEALPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHVFKGFLYDQGVEAGDG 75
           DVGNKEALPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHVFKGFLYDQGVEAGDG
Sbjct: 300 DVGNKEALPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHVFKGFLYDQGVEAGDG 359

Query: 76  FPNVSELHLGDGVGGGGTINNRNGSSSSPLVDPSDVYNTAASGSGGVPGFLGGSNYG 133
           FPNVSELHLGDGVGGGGTINNRNGSSSSPLVDPSDVYNTAASGSGGVPGFLGGSNYG
Sbjct: 360 FPNVSELHLGDGVGGGGTINNRNGSSSSPLVDPSDVYNTAASGSGGVPGFLGGSNYG 416

[Close]
BLAST of MELO3C031083 vs. NCBI nr
Match: XP_008449658.1 (PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 [Cucumis melo])

HSP 1 Score: 240.0 bits (611), Expect = 1.6e-59
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0 

Query: 16  DVGNKEALPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHVFKGFLYDQGVEAGDG 75
           DVGNKEALPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHVFKGFLYDQGVEAGDG
Sbjct: 246 DVGNKEALPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHVFKGFLYDQGVEAGDG 305

Query: 76  FPNVSELHLGDGVGGGGTINNRNGSSSSPLVDPSDVYNTAASGSGGVPGFLGGSNYG 133
           FPNVSELHLGDGVGGGGTINNRNGSSSSPLVDPSDVYNTAASGSGGVPGFLGGSNYG
Sbjct: 306 FPNVSELHLGDGVGGGGTINNRNGSSSSPLVDPSDVYNTAASGSGGVPGFLGGSNYG 362

[Close]
BLAST of MELO3C031083 vs. NCBI nr
Match: XP_008449659.1 (PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like isoform X2 [Cucumis melo])

HSP 1 Score: 238.8 bits (608), Expect = 3.7e-59
Identity = 117/118 (99.15%), Postives = 117/118 (99.15%), Query Frame = 0 

Query: 16  DVGNKEALPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHVFKGFLYDQGVEAGDG 75
           DVGNKEALPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHVFKGFLYDQGVEAGDG
Sbjct: 246 DVGNKEALPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHVFKGFLYDQGVEAGDG 305

Query: 76  FPNVSELHLGDGVGGGGTINNRNGSSSSPLVDPSDVYNTAASGSGGVPGFLGGSNYGF 134
           FPNVSELHLGDGVGGGGTINNRNGSSSSPLVDPSDVYNTAASGSGGVPGFLGGSNY F
Sbjct: 306 FPNVSELHLGDGVGGGGTINNRNGSSSSPLVDPSDVYNTAASGSGGVPGFLGGSNYVF 363

[Close]
BLAST of MELO3C031083 vs. NCBI nr
Match: XP_011657617.1 (protein LATERAL ROOT PRIMORDIUM 1 [Cucumis sativus] >KGN48103.1 hypothetical protein Csa_003714 [Cucumis sativus])

HSP 1 Score: 233.0 bits (593), Expect = 2.0e-57
Identity = 113/117 (96.58%), Postives = 114/117 (97.44%), Query Frame = 0 

Query: 16  DVGNKEALPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHVFKGFLYDQGVEAGDG 75
           D GNKEALPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHVFKGFLYDQGVEAGDG
Sbjct: 245 DAGNKEALPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHVFKGFLYDQGVEAGDG 304

Query: 76  FPNVSELHLGDGVGGGGTINNRNGSSSSPLVDPSDVYNTAASGSGGVPGFLGGSNYG 133
           FPNVSELHLGDG GGGGT+NNRNGSSSSPLVDPSDVYNTA SGSGGVPGFLGGSNYG
Sbjct: 305 FPNVSELHLGDGGGGGGTMNNRNGSSSSPLVDPSDVYNTAGSGSGGVPGFLGGSNYG 361

[Close]
BLAST of MELO3C031083 vs. ExPASy Swiss-Prot
Match: Q94CK9 (Protein LATERAL ROOT PRIMORDIUM 1 OS=Arabidopsis thaliana OX=3702 GN=LRP1 PE=1 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.2e-31
Identity = 68/105 (64.76%), Postives = 84/105 (80.00%), Query Frame = 0 

Query: 18  GNKEALPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHVFKGFLYDQGVEAGDGFP 77
           G++EA PGQ+RA AVFKCVRVTAV+DGDDEYAY A+VKIGGHVFKGFLYDQG+E  +GFP
Sbjct: 218 GSREAWPGQVRAAAVFKCVRVTAVEDGDDEYAYQAVVKIGGHVFKGFLYDQGLEPKEGFP 277

Query: 78  NVSELHLGDGVGGGGTINNRNG-SSSSPLVDPSDVYNTAASGSGG 122
           ++S+LHL      GG+ NN NG S+S+P++DP +V      GSGG
Sbjct: 278 SMSDLHL------GGSANNHNGVSASAPILDPPNVVYGGGGGSGG 316

[Close]
BLAST of MELO3C031083 vs. ExPASy Swiss-Prot
Match: Q9FXH7 (Protein SHI RELATED SEQUENCE 7 OS=Arabidopsis thaliana OX=3702 GN=SRS7 PE=1 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 4.6e-12
Identity = 48/123 (39.02%), Postives = 64/123 (52.03%), Query Frame = 0 

Query: 23  LPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHVFKGFLYDQGVEAGDGFPNVS-- 82
           LP +I + AVF+C+RV+++DD D+EYAY   V IGGHVFKG LYDQG  +     + S  
Sbjct: 223 LPPEISSPAVFRCMRVSSIDDEDEEYAYQTAVSIGGHVFKGILYDQGPSSDHHRYSSSLN 282

Query: 83  -------ELHLGDGVGGGGT------INNRNGSSSSPLVDPSDVYNTAASG-----SGGV 126
                   L+L D      T      +N  NGS     +DPS +Y   A+      +GG 
Sbjct: 283 GETSHQHHLNLMDSTPSAATTNAVTAVNTNNGS-----IDPSSLYTAVATPFNAFVAGGT 340

[Close]
BLAST of MELO3C031083 vs. ExPASy Swiss-Prot
Match: Q9SD40 (Protein SHI RELATED SEQUENCE 1 OS=Arabidopsis thaliana OX=3702 GN=SRS1 PE=1 SV=2)

HSP 1 Score: 71.2 bits (173), Expect = 1.3e-11
Identity = 47/122 (38.52%), Postives = 66/122 (54.10%), Query Frame = 0 

Query: 16  DVGNKEALPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHVFKGFLYDQGV-EAGD 75
           +VGN    P ++ + AVF+CVRV++V+DG++E+AY   V IGGH+FKG LYD G   +G 
Sbjct: 234 EVGN---FPAEVSSSAVFRCVRVSSVEDGEEEFAYQTAVSIGGHIFKGILYDLGPGSSGG 293

Query: 76  GFPNVSELHLGDGVGGGGTINNRNGSSSSPLVDPSDVYNTAASGSGGVPGFLGGSNYGFL 135
           G  NV  +  G+   GGG      G+    L+    V    AS S    G +G S+    
Sbjct: 294 GGYNV--VAAGESSSGGG------GAQQLNLITAGSVTVATASSSTPNLGGIGSSSAAAA 344

Query: 136 LY 137
            Y
Sbjct: 354 TY 344

[Close]
BLAST of MELO3C031083 vs. ExPASy Swiss-Prot
Match: O65517 (Protein SHI RELATED SEQUENCE 2 OS=Arabidopsis thaliana OX=3702 GN=SRS2 PE=1 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.9e-11
Identity = 41/100 (41.00%), Postives = 57/100 (57.00%), Query Frame = 0 

Query: 22  ALPGQIRAQAVFKCVRVTAVDD-GDDEYAYHAMVKIGGHVFKGFLYDQGVEAG--DGFPN 81
           + PG++ + A+F+CV+++ VDD GD +YAY   V IGGH+FKG LYDQG E+    G   
Sbjct: 196 SFPGEVSSDALFRCVKMSGVDDGGDGQYAYQTTVNIGGHLFKGILYDQGPESSYMSGGSG 255

Query: 82  VSELHLGDGVGGGG---------TINNRNGSSSSPLVDPS 110
            S+ H     GGGG           +   G SS+  VDP+
Sbjct: 256 GSD-HQSSSAGGGGGGHPFNPPVVTDGGGGVSSAMFVDPN 294

[Close]
BLAST of MELO3C031083 vs. ExPASy Swiss-Prot
Match: K4B6C9 (Protein EXPRESSION OF TERPENOIDS 1 OS=Solanum lycopersicum OX=4081 GN=EOT1 PE=2 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.2e-09
Identity = 38/108 (35.19%), Postives = 59/108 (54.63%), Query Frame = 0 

Query: 24  PGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHVFKGFLYDQGVEAGDGFPNVSELH 83
           P ++R  AVF+C+++++++D +D+ AY A V IGGHVFKG LYDQG E+       +   
Sbjct: 226 PSKVRTSAVFQCIQMSSIEDDEDQLAYQAAVSIGGHVFKGILYDQGHESQYNNMVAAGGD 285

Query: 84  LGDGVGGGGTINNRNGSSSSPLVDPSDVYNTAASGSGGVPGFLGGSNY 132
              G   GG  ++ + S++           TA + SGG     G SN+
Sbjct: 286 TSSGGSAGGVQHHHHNSAA---------VATATTTSGGDATAAGPSNF 324

[Close]
BLAST of MELO3C031083 vs. ExPASy TrEMBL
Match: A0A5A7V0Q8 (Protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold182G00770 PE=3 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 8.0e-60
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0 

Query: 16  DVGNKEALPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHVFKGFLYDQGVEAGDG 75
           DVGNKEALPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHVFKGFLYDQGVEAGDG
Sbjct: 300 DVGNKEALPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHVFKGFLYDQGVEAGDG 359

Query: 76  FPNVSELHLGDGVGGGGTINNRNGSSSSPLVDPSDVYNTAASGSGGVPGFLGGSNYG 133
           FPNVSELHLGDGVGGGGTINNRNGSSSSPLVDPSDVYNTAASGSGGVPGFLGGSNYG
Sbjct: 360 FPNVSELHLGDGVGGGGTINNRNGSSSSPLVDPSDVYNTAASGSGGVPGFLGGSNYG 416

[Close]
BLAST of MELO3C031083 vs. ExPASy TrEMBL
Match: A0A1S3BMJ0 (protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491474 PE=3 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 8.0e-60
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0 

Query: 16  DVGNKEALPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHVFKGFLYDQGVEAGDG 75
           DVGNKEALPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHVFKGFLYDQGVEAGDG
Sbjct: 246 DVGNKEALPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHVFKGFLYDQGVEAGDG 305

Query: 76  FPNVSELHLGDGVGGGGTINNRNGSSSSPLVDPSDVYNTAASGSGGVPGFLGGSNYG 133
           FPNVSELHLGDGVGGGGTINNRNGSSSSPLVDPSDVYNTAASGSGGVPGFLGGSNYG
Sbjct: 306 FPNVSELHLGDGVGGGGTINNRNGSSSSPLVDPSDVYNTAASGSGGVPGFLGGSNYG 362

[Close]
BLAST of MELO3C031083 vs. ExPASy TrEMBL
Match: A0A1S3BN66 (protein LATERAL ROOT PRIMORDIUM 1-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103491474 PE=3 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 8.0e-60
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0 

Query: 16  DVGNKEALPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHVFKGFLYDQGVEAGDG 75
           DVGNKEALPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHVFKGFLYDQGVEAGDG
Sbjct: 246 DVGNKEALPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHVFKGFLYDQGVEAGDG 305

Query: 76  FPNVSELHLGDGVGGGGTINNRNGSSSSPLVDPSDVYNTAASGSGGVPGFLGGSNYG 133
           FPNVSELHLGDGVGGGGTINNRNGSSSSPLVDPSDVYNTAASGSGGVPGFLGGSNYG
Sbjct: 306 FPNVSELHLGDGVGGGGTINNRNGSSSSPLVDPSDVYNTAASGSGGVPGFLGGSNYG 362

[Close]
BLAST of MELO3C031083 vs. ExPASy TrEMBL
Match: A0A1S3BMI2 (protein LATERAL ROOT PRIMORDIUM 1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103491474 PE=3 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 1.8e-59
Identity = 117/118 (99.15%), Postives = 117/118 (99.15%), Query Frame = 0 

Query: 16  DVGNKEALPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHVFKGFLYDQGVEAGDG 75
           DVGNKEALPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHVFKGFLYDQGVEAGDG
Sbjct: 246 DVGNKEALPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHVFKGFLYDQGVEAGDG 305

Query: 76  FPNVSELHLGDGVGGGGTINNRNGSSSSPLVDPSDVYNTAASGSGGVPGFLGGSNYGF 134
           FPNVSELHLGDGVGGGGTINNRNGSSSSPLVDPSDVYNTAASGSGGVPGFLGGSNY F
Sbjct: 306 FPNVSELHLGDGVGGGGTINNRNGSSSSPLVDPSDVYNTAASGSGGVPGFLGGSNYVF 363

[Close]
BLAST of MELO3C031083 vs. ExPASy TrEMBL
Match: A0A0A0KF01 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G432270 PE=3 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 9.8e-58
Identity = 113/117 (96.58%), Postives = 114/117 (97.44%), Query Frame = 0 

Query: 16  DVGNKEALPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHVFKGFLYDQGVEAGDG 75
           D GNKEALPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHVFKGFLYDQGVEAGDG
Sbjct: 245 DAGNKEALPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHVFKGFLYDQGVEAGDG 304

Query: 76  FPNVSELHLGDGVGGGGTINNRNGSSSSPLVDPSDVYNTAASGSGGVPGFLGGSNYG 133
           FPNVSELHLGDG GGGGT+NNRNGSSSSPLVDPSDVYNTA SGSGGVPGFLGGSNYG
Sbjct: 305 FPNVSELHLGDGGGGGGTMNNRNGSSSSPLVDPSDVYNTAGSGSGGVPGFLGGSNYG 361

[Close]
BLAST of MELO3C031083 vs. TAIR 10
Match: AT5G12330.2 (Lateral root primordium (LRP) protein-related )

HSP 1 Score: 137.9 bits (346), Expect = 8.2e-33
Identity = 68/105 (64.76%), Postives = 84/105 (80.00%), Query Frame = 0 

Query: 18  GNKEALPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHVFKGFLYDQGVEAGDGFP 77
           G++EA PGQ+RA AVFKCVRVTAV+DGDDEYAY A+VKIGGHVFKGFLYDQG+E  +GFP
Sbjct: 218 GSREAWPGQVRAAAVFKCVRVTAVEDGDDEYAYQAVVKIGGHVFKGFLYDQGLEPKEGFP 277

Query: 78  NVSELHLGDGVGGGGTINNRNG-SSSSPLVDPSDVYNTAASGSGG 122
           ++S+LHL      GG+ NN NG S+S+P++DP +V      GSGG
Sbjct: 278 SMSDLHL------GGSANNHNGVSASAPILDPPNVVYGGGGGSGG 316

[Close]
BLAST of MELO3C031083 vs. TAIR 10
Match: AT5G12330.1 (Lateral root primordium (LRP) protein-related )

HSP 1 Score: 137.9 bits (346), Expect = 8.2e-33
Identity = 68/105 (64.76%), Postives = 84/105 (80.00%), Query Frame = 0 

Query: 18  GNKEALPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHVFKGFLYDQGVEAGDGFP 77
           G++EA PGQ+RA AVFKCVRVTAV+DGDDEYAY A+VKIGGHVFKGFLYDQG+E  +GFP
Sbjct: 218 GSREAWPGQVRAAAVFKCVRVTAVEDGDDEYAYQAVVKIGGHVFKGFLYDQGLEPKEGFP 277

Query: 78  NVSELHLGDGVGGGGTINNRNG-SSSSPLVDPSDVYNTAASGSGG 122
           ++S+LHL      GG+ NN NG S+S+P++DP +V      GSGG
Sbjct: 278 SMSDLHL------GGSANNHNGVSASAPILDPPNVVYGGGGGSGG 316

[Close]
BLAST of MELO3C031083 vs. TAIR 10
Match: AT5G12330.4 (Lateral root primordium (LRP) protein-related )

HSP 1 Score: 137.9 bits (346), Expect = 8.2e-33
Identity = 68/105 (64.76%), Postives = 84/105 (80.00%), Query Frame = 0 

Query: 18  GNKEALPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHVFKGFLYDQGVEAGDGFP 77
           G++EA PGQ+RA AVFKCVRVTAV+DGDDEYAY A+VKIGGHVFKGFLYDQG+E  +GFP
Sbjct: 305 GSREAWPGQVRAAAVFKCVRVTAVEDGDDEYAYQAVVKIGGHVFKGFLYDQGLEPKEGFP 364

Query: 78  NVSELHLGDGVGGGGTINNRNG-SSSSPLVDPSDVYNTAASGSGG 122
           ++S+LHL      GG+ NN NG S+S+P++DP +V      GSGG
Sbjct: 365 SMSDLHL------GGSANNHNGVSASAPILDPPNVVYGGGGGSGG 403

[Close]
BLAST of MELO3C031083 vs. TAIR 10
Match: AT1G19790.1 (SHI-related sequence 7 )

HSP 1 Score: 72.8 bits (177), Expect = 3.2e-13
Identity = 48/123 (39.02%), Postives = 64/123 (52.03%), Query Frame = 0 

Query: 23  LPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHVFKGFLYDQGVEAGDGFPNVS-- 82
           LP +I + AVF+C+RV+++DD D+EYAY   V IGGHVFKG LYDQG  +     + S  
Sbjct: 223 LPPEISSPAVFRCMRVSSIDDEDEEYAYQTAVSIGGHVFKGILYDQGPSSDHHRYSSSLN 282

Query: 83  -------ELHLGDGVGGGGT------INNRNGSSSSPLVDPSDVYNTAASG-----SGGV 126
                   L+L D      T      +N  NGS     +DPS +Y   A+      +GG 
Sbjct: 283 GETSHQHHLNLMDSTPSAATTNAVTAVNTNNGS-----IDPSSLYTAVATPFNAFVAGGT 340

[Close]
BLAST of MELO3C031083 vs. TAIR 10
Match: AT1G19790.2 (SHI-related sequence 7 )

HSP 1 Score: 72.8 bits (177), Expect = 3.2e-13
Identity = 48/123 (39.02%), Postives = 64/123 (52.03%), Query Frame = 0 

Query: 23  LPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHVFKGFLYDQGVEAGDGFPNVS-- 82
           LP +I + AVF+C+RV+++DD D+EYAY   V IGGHVFKG LYDQG  +     + S  
Sbjct: 223 LPPEISSPAVFRCMRVSSIDDEDEEYAYQTAVSIGGHVFKGILYDQGPSSDHHRYSSSLN 282

Query: 83  -------ELHLGDGVGGGGT------INNRNGSSSSPLVDPSDVYNTAASG-----SGGV 126
                   L+L D      T      +N  NGS     +DPS +Y   A+      +GG 
Sbjct: 283 GETSHQHHLNLMDSTPSAATTNAVTAVNTNNGS-----IDPSSLYTAVATPFNAFVAGGT 340

The following BLAST results are available for this feature:
BLAST of MELO3C031083 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008449660.11.6e-59100.00PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like isoform X3 [Cucumis melo][more]
KAA0061772.11.6e-59100.00protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 [Cucumis melo var. makuwa] >TY... [more]
XP_008449658.11.6e-59100.00PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 [Cucumis melo][more]
XP_008449659.13.7e-5999.15PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like isoform X2 [Cucumis melo][more]
XP_011657617.12.0e-5796.58protein LATERAL ROOT PRIMORDIUM 1 [Cucumis sativus] >KGN48103.1 hypothetical pro... [more]
BLAST of MELO3C031083 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q94CK91.2e-3164.76Protein LATERAL ROOT PRIMORDIUM 1 OS=Arabidopsis thaliana OX=3702 GN=LRP1 PE=1 S... [more]
Q9FXH74.6e-1239.02Protein SHI RELATED SEQUENCE 7 OS=Arabidopsis thaliana OX=3702 GN=SRS7 PE=1 SV=1[more]
Q9SD401.3e-1138.52Protein SHI RELATED SEQUENCE 1 OS=Arabidopsis thaliana OX=3702 GN=SRS1 PE=1 SV=2[more]
O655173.9e-1141.00Protein SHI RELATED SEQUENCE 2 OS=Arabidopsis thaliana OX=3702 GN=SRS2 PE=1 SV=1[more]
K4B6C91.2e-0935.19Protein EXPRESSION OF TERPENOIDS 1 OS=Solanum lycopersicum OX=4081 GN=EOT1 PE=2 ... [more]
BLAST of MELO3C031083 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7V0Q88.0e-60100.00Protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 OS=Cucumis melo var. makuwa OX... [more]
A0A1S3BMJ08.0e-60100.00protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC... [more]
A0A1S3BN668.0e-60100.00protein LATERAL ROOT PRIMORDIUM 1-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC... [more]
A0A1S3BMI21.8e-5999.15protein LATERAL ROOT PRIMORDIUM 1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC... [more]
A0A0A0KF019.8e-5896.58Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G432270 PE=3 SV=1[more]
BLAST of MELO3C031083 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G12330.28.2e-3364.76Lateral root primordium (LRP) protein-related [more]
AT5G12330.18.2e-3364.76Lateral root primordium (LRP) protein-related [more]
AT5G12330.48.2e-3364.76Lateral root primordium (LRP) protein-related [more]
AT1G19790.13.2e-1339.02SHI-related sequence 7 [more]
AT1G19790.23.2e-1339.02SHI-related sequence 7 [more]
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF05142DUF702coord: 20..71
e-value: 6.4E-23
score: 81.9
NoneNo IPR availablePANTHERPTHR31604:SF30PROTEIN LATERAL ROOT PRIMORDIUM 1coord: 16..130
IPR006511SHORT INTERNODES, C-terminalTIGRFAMTIGR01624TIGR01624coord: 23..70
e-value: 1.8E-28
score: 96.2
IPR007818SHI protein familyPANTHERPTHR31604PROTEIN LATERAL ROOT PRIMORDIUM 1coord: 16..130

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C031083.1MELO3C031083.1mRNA