MELO3C031069 (gene) Melon (DHL92) v4

Overview


Name	MELO3C031069
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Lipoxygenase
Location	chr05: 777928 .. 778596 (+)
RNA-Seq Expression	MELO3C031069
Synteny	MELO3C031069

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGAAAAAGATTCCTCCATGAGTGTATAAATATGGTTAATGATATGTGTTGGTAATAAGGCAGTGAAAGAGTTTGGGTTTTGTGATATTCCAAATTTGTTATATCGTAAACTCCCCAAGGGCAGGAAAGGATGAGTTATACGTGTACTGTAGCTGTTACTGTGAAACCCAAAAGCAAAGATGACTTTCCTTCGAATGAAGTCATAAATCTCGAGTTTGCTAGCGTCAATTTGGATTCGAGTAAGTCCTCATCCTCTCTTTTATTTATTTATATATGTTTTTCTTCACTGCTAATGTAACCTATATATATATTCTTCTGATGTAAAGTGATTTAATAACGCACATATGACATATGTACATATACACAGATGAACAGCCAAAGTTTATCACATGTATTGCTCAATTAAAAAGTGGTAATAATAAAGTGAGCAAGCTGTTCGAAGGTAGTATTGAGGTTGCTAGAGATTTTGGGGAGATTGGAGCAGTGATTGTTGAATTGCATGAACGTACAAAGAATGAGAGGTTTATCGACACCATTTCTGTTGAGGCCGAAGAGCCTCCAATCTCGGTTACGTTTAGCTGCAAATCATGGGTGCAACCCAAGGGTCTTATTGCCCACCGAAGGATCTTCTTTTCTTCCAACAAGGTGATGGTTTGCTTCATCATTTAA

mRNA sequence

TTGAAAAAGATTCCTCCATGAGTGTATAAATATGGTTAATGATATGTGTTGGTAATAAGGCAGTGAAAGAGTTTGGGTTTTGTGATATTCCAAATTTGTTATATCGTAAACTCCCCAAGGGCAGGAAAGGATGAGTTATACGTGTACTGTAGCTGTTACTGTGAAACCCAAAAGCAAAGATGACTTTCCTTCGAATGAAGTCATAAATCTCGAGTTTGCTAGCGTCAATTTGGATTCGAATGAACAGCCAAAGTTTATCACATGTATTGCTCAATTAAAAAGTGGTAATAATAAAGTGAGCAAGCTGTTCGAAGGTAGTATTGAGGTTGCTAGAGATTTTGGGGAGATTGGAGCAGTGATTGTTGAATTGCATGAACGTACAAAGAATGAGAGGTTTATCGACACCATTTCTGTTGAGGCCGAAGAGCCTCCAATCTCGGTTACGTTTAGCTGCAAATCATGGGTGCAACCCAAGGGTCTTATTGCCCACCGAAGGATCTTCTTTTCTTCCAACAAGGTGATGGTTTGCTTCATCATTTAA

Coding sequence (CDS)

ATGAGTTATACGTGTACTGTAGCTGTTACTGTGAAACCCAAAAGCAAAGATGACTTTCCTTCGAATGAAGTCATAAATCTCGAGTTTGCTAGCGTCAATTTGGATTCGAATGAACAGCCAAAGTTTATCACATGTATTGCTCAATTAAAAAGTGGTAATAATAAAGTGAGCAAGCTGTTCGAAGGTAGTATTGAGGTTGCTAGAGATTTTGGGGAGATTGGAGCAGTGATTGTTGAATTGCATGAACGTACAAAGAATGAGAGGTTTATCGACACCATTTCTGTTGAGGCCGAAGAGCCTCCAATCTCGGTTACGTTTAGCTGCAAATCATGGGTGCAACCCAAGGGTCTTATTGCCCACCGAAGGATCTTCTTTTCTTCCAACAAGGTGATGGTTTGCTTCATCATTTAA

Protein sequence

MSYTCTVAVTVKPKSKDDFPSNEVINLEFASVNLDSNEQPKFITCIAQLKSGNNKVSKLFEGSIEVARDFGEIGAVIVELHERTKNERFIDTISVEAEEPPISVTFSCKSWVQPKGLIAHRRIFFSSNKVMVCFII

Homology

[Close]

BLAST of MELO3C031069 vs. NCBI nr
Match: XP_016900735.1 (PREDICTED: lipoxygenase 2, chloroplastic-like [Cucumis melo])

HSP 1 Score: 271.6 bits (693), Expect = 3.8e-69
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MSYTCTVAVTVKPKSKDDFPSNEVINLEFASVNLDSNEQPKFITCIAQLKSGNNKVSKLF 60
           MSYTCTVAVTVKPKSKDDFPSNEVINLEFASVNLDSNEQPKFITCIAQLKSGNNKVSKLF
Sbjct: 1   MSYTCTVAVTVKPKSKDDFPSNEVINLEFASVNLDSNEQPKFITCIAQLKSGNNKVSKLF 60

Query: 61  EGSIEVARDFGEIGAVIVELHERTKNERFIDTISVEAEEPPISVTFSCKSWVQPKGLIAH 120
           EGSIEVARDFGEIGAVIVELHERTKNERFIDTISVEAEEPPISVTFSCKSWVQPKGLIAH
Sbjct: 61  EGSIEVARDFGEIGAVIVELHERTKNERFIDTISVEAEEPPISVTFSCKSWVQPKGLIAH 120

Query: 121 RRIFFSSNKVMVCFII 137
           RRIFFSSNKVMVCFII
Sbjct: 121 RRIFFSSNKVMVCFII 136

[Close]

BLAST of MELO3C031069 vs. NCBI nr
Match: KAA0041371.1 (lipoxygenase 2 [Cucumis melo var. makuwa])

HSP 1 Score: 258.8 bits (660), Expect = 2.6e-65
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0


Query: 1   MSYTCTVAVTVKPKSKDDFPSNEVINLEFASVNLDSNEQPKFITCIAQLKSGNNKVSKLF 60
           MSYTCTVAVTVKPKSKDDFPSNEVINLEFASVNLDSNEQPKFITCIAQLKSGNNKVSKLF
Sbjct: 1   MSYTCTVAVTVKPKSKDDFPSNEVINLEFASVNLDSNEQPKFITCIAQLKSGNNKVSKLF 60

Query: 61  EGSIEVARDFGEIGAVIVELHERTKNERFIDTISVEAEEPPISVTFSCKSWVQPKGLIAH 120
           EGSIEVARDFGEIGAVIVELHERTKNERFIDTISVEAEEPPISVTFSCKSWVQPKGLIAH
Sbjct: 61  EGSIEVARDFGEIGAVIVELHERTKNERFIDTISVEAEEPPISVTFSCKSWVQPKGLIAH 120

Query: 121 RRIFFSSNK 130
           RRIFFSSNK
Sbjct: 121 RRIFFSSNK 129

[Close]

BLAST of MELO3C031069 vs. NCBI nr
Match: TYK21645.1 (lipoxygenase 2 [Cucumis melo var. makuwa])

HSP 1 Score: 171.4 bits (433), Expect = 5.4e-39
Identity = 95/131 (72.52%), Postives = 104/131 (79.39%), Query Frame = 0


Query: 1   MSYTCTVAVTVKPKSKDDFPSNEVINLEFASVNLDSNEQPK-FITCIAQLKSGNNKVS-K 60
           MSYT  V VTVKPK K++FP  E+I L+FASV LDSN Q K FI C AQL+  +  V  K
Sbjct: 1   MSYTGNVVVTVKPKKKEEFPWVEIIYLKFASVELDSNGQSKEFIKCEAQLQEVDESVEYK 60

Query: 61  LFEGSIEVARDFGEIGAVIVELHERTKNERFIDTISVEAEEPPISVTFSCKSWVQPKGLI 120
            ++G I+VA  FGEIGAVIVEL E   NERFIDTISVEAEEPPISVTFSCKSWVQPKGLI
Sbjct: 61  KYKGEIKVAEGFGEIGAVIVELQEGV-NERFIDTISVEAEEPPISVTFSCKSWVQPKGLI 120

Query: 121 AHRRIFFSSNK 130
           AHRRIFFSSNK
Sbjct: 121 AHRRIFFSSNK 130

[Close]

BLAST of MELO3C031069 vs. NCBI nr
Match: KAA0041373.1 (lipoxygenase 2 [Cucumis melo var. makuwa])

HSP 1 Score: 169.5 bits (428), Expect = 2.0e-38
Identity = 94/131 (71.76%), Postives = 103/131 (78.63%), Query Frame = 0


Query: 1   MSYTCTVAVTVKPKSKDDFPSNEVINLEFASVNLDSNEQPK-FITCIAQLKSGNNKVS-K 60
           MSY   V VTVKPK K++FP  E+I L+FASV LDSN QPK FI C AQL+  +  V  K
Sbjct: 1   MSYMGNVVVTVKPKKKEEFPWVEIIYLKFASVELDSNGQPKEFIKCEAQLQEVDESVEYK 60

Query: 61  LFEGSIEVARDFGEIGAVIVELHERTKNERFIDTISVEAEEPPISVTFSCKSWVQPKGLI 120
            ++G I+VA  FGEIGAVIVEL E   NERFIDTISV AEEPPISVTFSCKSWVQPKGLI
Sbjct: 61  KYKGEIKVAEGFGEIGAVIVELQEGV-NERFIDTISVVAEEPPISVTFSCKSWVQPKGLI 120

Query: 121 AHRRIFFSSNK 130
           AHRRIFFSSNK
Sbjct: 121 AHRRIFFSSNK 130

[Close]

BLAST of MELO3C031069 vs. NCBI nr
Match: XP_008449948.1 (PREDICTED: putative lipoxygenase 5, partial [Cucumis melo])

HSP 1 Score: 169.5 bits (428), Expect = 2.0e-38
Identity = 94/131 (71.76%), Postives = 103/131 (78.63%), Query Frame = 0


Query: 1   MSYTCTVAVTVKPKSKDDFPSNEVINLEFASVNLDSNEQPK-FITCIAQLKSGNNKVS-K 60
           MSY   V VTVKPK K++FP  E+I L+FASV LDSN QPK FI C AQL+  +  V  K
Sbjct: 1   MSYMGNVVVTVKPKKKEEFPWVEIIYLKFASVELDSNGQPKEFIKCEAQLQEVDESVEYK 60

Query: 61  LFEGSIEVARDFGEIGAVIVELHERTKNERFIDTISVEAEEPPISVTFSCKSWVQPKGLI 120
            ++G I+VA  FGEIGAVIVEL E   NERFIDTISV AEEPPISVTFSCKSWVQPKGLI
Sbjct: 61  KYKGEIKVAEGFGEIGAVIVELQEGV-NERFIDTISVVAEEPPISVTFSCKSWVQPKGLI 120

Query: 121 AHRRIFFSSNK 130
           AHRRIFFSSNK
Sbjct: 121 AHRRIFFSSNK 130

[Close]

BLAST of MELO3C031069 vs. ExPASy Swiss-Prot
Match: P38418 (Lipoxygenase 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LOX2 PE=1 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 4.0e-05
Identity = 25/72 (34.72%), Postives = 40/72 (55.56%), Query Frame = 0


Query: 60  FEGSIEVARDFGEIGAVIVELHERTKNERFIDTISVEAEEPPISVTFSCKSWVQPKGLIA 119
           +E   E+  DFG +GA+ ++     +  R +    VE + P  S+TF+C+SWV PK +  
Sbjct: 137 YECEFEMPEDFGPVGAIKIQ----NQYHRQLFLKGVELKLPGGSITFTCESWVAPKSVDP 196

Query: 120 HRRIFFSSNKVM 132
            +RIFFS    +
Sbjct: 197 TKRIFFSDKSYL 204

[Close]

BLAST of MELO3C031069 vs. ExPASy TrEMBL
Match: A0A1S4DYE1 (lipoxygenase 2, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC107991007 PE=4 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 1.8e-69
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MSYTCTVAVTVKPKSKDDFPSNEVINLEFASVNLDSNEQPKFITCIAQLKSGNNKVSKLF 60
           MSYTCTVAVTVKPKSKDDFPSNEVINLEFASVNLDSNEQPKFITCIAQLKSGNNKVSKLF
Sbjct: 1   MSYTCTVAVTVKPKSKDDFPSNEVINLEFASVNLDSNEQPKFITCIAQLKSGNNKVSKLF 60

Query: 61  EGSIEVARDFGEIGAVIVELHERTKNERFIDTISVEAEEPPISVTFSCKSWVQPKGLIAH 120
           EGSIEVARDFGEIGAVIVELHERTKNERFIDTISVEAEEPPISVTFSCKSWVQPKGLIAH
Sbjct: 61  EGSIEVARDFGEIGAVIVELHERTKNERFIDTISVEAEEPPISVTFSCKSWVQPKGLIAH 120

Query: 121 RRIFFSSNKVMVCFII 137
           RRIFFSSNKVMVCFII
Sbjct: 121 RRIFFSSNKVMVCFII 136

[Close]

BLAST of MELO3C031069 vs. ExPASy TrEMBL
Match: A0A5A7TI85 (Lipoxygenase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold206G00160 PE=3 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 1.2e-65
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0


Query: 1   MSYTCTVAVTVKPKSKDDFPSNEVINLEFASVNLDSNEQPKFITCIAQLKSGNNKVSKLF 60
           MSYTCTVAVTVKPKSKDDFPSNEVINLEFASVNLDSNEQPKFITCIAQLKSGNNKVSKLF
Sbjct: 1   MSYTCTVAVTVKPKSKDDFPSNEVINLEFASVNLDSNEQPKFITCIAQLKSGNNKVSKLF 60

Query: 61  EGSIEVARDFGEIGAVIVELHERTKNERFIDTISVEAEEPPISVTFSCKSWVQPKGLIAH 120
           EGSIEVARDFGEIGAVIVELHERTKNERFIDTISVEAEEPPISVTFSCKSWVQPKGLIAH
Sbjct: 61  EGSIEVARDFGEIGAVIVELHERTKNERFIDTISVEAEEPPISVTFSCKSWVQPKGLIAH 120

Query: 121 RRIFFSSNK 130
           RRIFFSSNK
Sbjct: 121 RRIFFSSNK 129

[Close]

BLAST of MELO3C031069 vs. ExPASy TrEMBL
Match: A0A5D3DDQ4 (Lipoxygenase 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold859G00070 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 2.6e-39
Identity = 95/131 (72.52%), Postives = 104/131 (79.39%), Query Frame = 0


Query: 1   MSYTCTVAVTVKPKSKDDFPSNEVINLEFASVNLDSNEQPK-FITCIAQLKSGNNKVS-K 60
           MSYT  V VTVKPK K++FP  E+I L+FASV LDSN Q K FI C AQL+  +  V  K
Sbjct: 1   MSYTGNVVVTVKPKKKEEFPWVEIIYLKFASVELDSNGQSKEFIKCEAQLQEVDESVEYK 60

Query: 61  LFEGSIEVARDFGEIGAVIVELHERTKNERFIDTISVEAEEPPISVTFSCKSWVQPKGLI 120
            ++G I+VA  FGEIGAVIVEL E   NERFIDTISVEAEEPPISVTFSCKSWVQPKGLI
Sbjct: 61  KYKGEIKVAEGFGEIGAVIVELQEGV-NERFIDTISVEAEEPPISVTFSCKSWVQPKGLI 120

Query: 121 AHRRIFFSSNK 130
           AHRRIFFSSNK
Sbjct: 121 AHRRIFFSSNK 130

[Close]

BLAST of MELO3C031069 vs. ExPASy TrEMBL
Match: A0A5A7TDY8 (Lipoxygenase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold206G00180 PE=3 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 9.9e-39
Identity = 94/131 (71.76%), Postives = 103/131 (78.63%), Query Frame = 0


Query: 1   MSYTCTVAVTVKPKSKDDFPSNEVINLEFASVNLDSNEQPK-FITCIAQLKSGNNKVS-K 60
           MSY   V VTVKPK K++FP  E+I L+FASV LDSN QPK FI C AQL+  +  V  K
Sbjct: 1   MSYMGNVVVTVKPKKKEEFPWVEIIYLKFASVELDSNGQPKEFIKCEAQLQEVDESVEYK 60

Query: 61  LFEGSIEVARDFGEIGAVIVELHERTKNERFIDTISVEAEEPPISVTFSCKSWVQPKGLI 120
            ++G I+VA  FGEIGAVIVEL E   NERFIDTISV AEEPPISVTFSCKSWVQPKGLI
Sbjct: 61  KYKGEIKVAEGFGEIGAVIVELQEGV-NERFIDTISVVAEEPPISVTFSCKSWVQPKGLI 120

Query: 121 AHRRIFFSSNK 130
           AHRRIFFSSNK
Sbjct: 121 AHRRIFFSSNK 130

[Close]

BLAST of MELO3C031069 vs. ExPASy TrEMBL
Match: A0A1S3BP51 (putative lipoxygenase 5 OS=Cucumis melo OX=3656 GN=LOC103491677 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 9.9e-39
Identity = 94/131 (71.76%), Postives = 103/131 (78.63%), Query Frame = 0


Query: 1   MSYTCTVAVTVKPKSKDDFPSNEVINLEFASVNLDSNEQPK-FITCIAQLKSGNNKVS-K 60
           MSY   V VTVKPK K++FP  E+I L+FASV LDSN QPK FI C AQL+  +  V  K
Sbjct: 1   MSYMGNVVVTVKPKKKEEFPWVEIIYLKFASVELDSNGQPKEFIKCEAQLQEVDESVEYK 60

Query: 61  LFEGSIEVARDFGEIGAVIVELHERTKNERFIDTISVEAEEPPISVTFSCKSWVQPKGLI 120
            ++G I+VA  FGEIGAVIVEL E   NERFIDTISV AEEPPISVTFSCKSWVQPKGLI
Sbjct: 61  KYKGEIKVAEGFGEIGAVIVELQEGV-NERFIDTISVVAEEPPISVTFSCKSWVQPKGLI 120

Query: 121 AHRRIFFSSNK 130
           AHRRIFFSSNK
Sbjct: 121 AHRRIFFSSNK 130

[Close]

BLAST of MELO3C031069 vs. TAIR 10
Match: AT3G45140.1 (lipoxygenase 2 )

HSP 1 Score: 49.3 bits (116), Expect = 2.9e-06
Identity = 25/72 (34.72%), Postives = 40/72 (55.56%), Query Frame = 0


Query: 60  FEGSIEVARDFGEIGAVIVELHERTKNERFIDTISVEAEEPPISVTFSCKSWVQPKGLIA 119
           +E   E+  DFG +GA+ ++     +  R +    VE + P  S+TF+C+SWV PK +  
Sbjct: 137 YECEFEMPEDFGPVGAIKIQ----NQYHRQLFLKGVELKLPGGSITFTCESWVAPKSVDP 196

Query: 120 HRRIFFSSNKVM 132
            +RIFFS    +
Sbjct: 197 TKRIFFSDKSYL 204

The following BLAST results are available for this feature:

BLAST of MELO3C031069 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016900735.1	3.8e-69	100.00	PREDICTED: lipoxygenase 2, chloroplastic-like [Cucumis melo]	[more]
KAA0041371.1	2.6e-65	100.00	lipoxygenase 2 [Cucumis melo var. makuwa]	[more]
TYK21645.1	5.4e-39	72.52	lipoxygenase 2 [Cucumis melo var. makuwa]	[more]
KAA0041373.1	2.0e-38	71.76	lipoxygenase 2 [Cucumis melo var. makuwa]	[more]
XP_008449948.1	2.0e-38	71.76	PREDICTED: putative lipoxygenase 5, partial [Cucumis melo]	[more]

BLAST of MELO3C031069 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P38418	4.0e-05	34.72	Lipoxygenase 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LOX2 PE=1 SV=1	[more]

BLAST of MELO3C031069 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4DYE1	1.8e-69	100.00	lipoxygenase 2, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC107991007 PE=4 ...	[more]
A0A5A7TI85	1.2e-65	100.00	Lipoxygenase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold206G00160 P...	[more]
A0A5D3DDQ4	2.6e-39	72.52	Lipoxygenase 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold859G00070...	[more]
A0A5A7TDY8	9.9e-39	71.76	Lipoxygenase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold206G00180 P...	[more]
A0A1S3BP51	9.9e-39	71.76	putative lipoxygenase 5 OS=Cucumis melo OX=3656 GN=LOC103491677 PE=4 SV=1	[more]

BLAST of MELO3C031069 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G45140.1	2.9e-06	34.72	lipoxygenase 2	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001024	PLAT/LH2 domain	SMART	SM00308	LH2_4	coord: 3..127 e-value: 0.0048 score: 6.1
IPR001024	PLAT/LH2 domain	PFAM	PF01477	PLAT	coord: 63..125 e-value: 4.8E-5 score: 23.9
IPR001024	PLAT/LH2 domain	PROSITE	PS50095	PLAT	coord: 5..126 score: 15.727213
None	No IPR available	GENE3D	2.60.60.20	PLAT/LH2 domain	coord: 11..130 e-value: 5.6E-19 score: 70.6
IPR036392	PLAT/LH2 domain superfamily	SUPERFAMILY	49723	Lipase/lipooxygenase domain (PLAT/LH2 domain)	coord: 24..127

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C031069.1	MELO3C031069.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding