MELO3C031040.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C031040.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Unknown protein
Location	chr04: 33987675 .. 33988738 (+)
RNA-Seq Expression	MELO3C031040.jh1
Synteny	MELO3C031040.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGGGACAACGCCTTGGGCTTGGAAACCCCAGAAGTGGGTTCCTGTACGGCCGAACCCAGCTTGGACTTCATCCGCAATACACAAACCCCCTGCATTTCTAACCACTTTGTATGCCTCACCCAAGTAACCAGACGCCATTTCAACGATTCCTCCCACTCCCTGTTCAATTATCATTCATTTTTAAATTTAAAGGATGCGAGGGAGGGAACACAATAATGATCAAAGCTTTTTTTCATTAATTTACTTGTATAGCTTCGGATATAAAGGCAGCAACATTCCCTGAAGTTCCATAATCAATGATTTCTTGAACGTCTCTTGCATATTTCTCTCCATCTGATCCGAGCATGCCTCTGTATGGGTCTGGATTCAAAGCATGATGAACTCCGCTCTATACAATTCAATTCATTATTATTATTATTATTATTTGTCTTAATTAACTAGTTATAAATAATTAATTTGGCAAGGAATCAATTAAGCGAGGAGGACCCGGGGGGGGGGGAACCTGAATGACGTTGAATTTCCAAACGTTCTGAGCCGTAGCGGCCATGGTTGCAGCGGCATTACCATGATATGAGTTTCTTACAGAAATTACATCATGGTTGCCTGTGTATAGCCTCGCCATCATCAGGGCCAGCTCGTTTGCTTCCGTTCCCGAGTTCGTAAAAAAGACCACCTATATACACGTTATAAATTATTATCATTATTACTATTATGTATATTCAATTTTAAATTGCATGGTTATTTATTTATAGCTAACTTTGAGGTCGTTGGGCAATTTGGAAGCTAAAGCCTCTGCAAAATCAGTGATGGCATTATTGAGATAAAGAACGGTAGAATGTCGGAGGCTTTTTGTTTGATTCACAATGGCTTCCACCACTTCCGGATGGCAGTGACCGCAGCTCACAGTCGCGATCCCCCCAAAAGCGTCTAAATACCTCCGCCCATTCTCATCGAATAAGTACTGCCTCCTTCCATGTACAATGTTTAGCTGCCACTCACCCAAACGAATCAATTTCATAACACATAATTGATCATTTAACAAAATTAATCCATATATCC

mRNA sequence

ATGTCTGGGACAACGCCTTGGGCTTGGAAACCCCAGAAGTGGGTTCCTGTACGGCCGAACCCAGCTTGGACTTCATCCGCAATACACAAACCCCCTGCATTTCTAACCACTTTGTATGCCTCACCCAACCTCGCCATCATCAGGGCCAGCTCGTTTGCTTCCGTTCCCGAGTTCGTAAAAAAGACCACCTATATACACCTAACTTTGAGGTCGTTGGGCAATTTGGAAGCTAAAGCCTCTGCAAAATCAGTGATGGCATTATTGAGATAAAGAACGGTAGAATGTCGGAGGCTTTTTGTTTGATTCACAATGGCTTCCACCACTTCCGGATGGCAGTGACCGCAGCTCACAGTCGCGATCCCCCCAAAAGCGTCTAAATACCTCCGCCCATTCTCATCGAATAAGTACTGCCTCCTTCCATGTACAATGTTTAGCTGCCACTCACCCAAACGAATCAATTTCATAACACATAATTGATCATTTAACAAAATTAATCCATATATCC

Coding sequence (CDS)

ATGTCTGGGACAACGCCTTGGGCTTGGAAACCCCAGAAGTGGGTTCCTGTACGGCCGAACCCAGCTTGGACTTCATCCGCAATACACAAACCCCCTGCATTTCTAACCACTTTGTATGCCTCACCCAACCTCGCCATCATCAGGGCCAGCTCGTTTGCTTCCGTTCCCGAGTTCGTAAAAAAGACCACCTATATACACCTAACTTTGAGGTCGTTGGGCAATTTGGAAGCTAAAGCCTCTGCAAAATCAGTGATGGCATTATTGAGATAA

Protein sequence

MSGTTPWAWKPQKWVPVRPNPAWTSSAIHKPPAFLTTLYASPNLAIIRASSFASVPEFVKKTTYIHLTLRSLGNLEAKASAKSVMALLR

Homology

[Close]

BLAST of MELO3C031040.jh1 vs. NCBI nr
Match: CPU27656.1 (Uncharacterised protein [Mycobacteroides abscessus] >SKT63484.1 Uncharacterised protein [Mycobacteroides abscessus subsp. abscessus])

HSP 1 Score: 47.4 bits (111), Expect = 2.05e-04
Identity = 25/42 (59.52%), Postives = 26/42 (61.90%), Query Frame = 0


Query: 2  SGTTPWAWKPQKWVPVRPNPAWTSSAIHKPPAFLTTLYASPN 43
          SGTTPW   P +  PVRPNP  TSSAI  PPA  TT  A  N
Sbjct: 52 SGTTPWRMNPHQASPVRPNPGCTSSAISTPPAARTTSAAGSN 93

[Close]

BLAST of MELO3C031040.jh1 vs. NCBI nr
Match: SKU43528.1 (Uncharacterised protein [Mycobacteroides abscessus subsp. abscessus])

HSP 1 Score: 47.4 bits (111), Expect = 4.44e-04
Identity = 25/42 (59.52%), Postives = 26/42 (61.90%), Query Frame = 0


Query: 2   SGTTPWAWKPQKWVPVRPNPAWTSSAIHKPPAFLTTLYASPN 43
           SGTTPW   P +  PVRPNP  TSSAI  PPA  TT  A  N
Sbjct: 95  SGTTPWRMNPHQASPVRPNPGCTSSAISTPPAARTTSAAGSN 136

[Close]

BLAST of MELO3C031040.jh1 vs. ExPASy TrEMBL
Match: A0A2P2PLH3 (Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 6.29e-06
Identity = 32/47 (68.09%), Postives = 34/47 (72.34%), Query Frame = 0


Query: 43 NLAIIRASSFASVPEFVKKTTYIHLTLRSLGNLEAKASAKSVMALLR 89
          NLAII A+SFASVPEFVK  T     LR  G LEAK SAKS +ALLR
Sbjct: 36 NLAIIIANSFASVPEFVKNAT-----LRLPGILEAKLSAKSAIALLR 77

[Close]

BLAST of MELO3C031040.jh1 vs. ExPASy TrEMBL
Match: A0A1U1FU24 (Uncharacterized protein OS=Mycobacteroides abscessus subsp. abscessus OX=1185650 GN=SAMEA2275847_04195 PE=4 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 2.15e-04
Identity = 25/42 (59.52%), Postives = 26/42 (61.90%), Query Frame = 0


Query: 2   SGTTPWAWKPQKWVPVRPNPAWTSSAIHKPPAFLTTLYASPN 43
           SGTTPW   P +  PVRPNP  TSSAI  PPA  TT  A  N
Sbjct: 95  SGTTPWRMNPHQASPVRPNPGCTSSAISTPPAARTTSAAGSN 136

The following BLAST results are available for this feature:

BLAST of MELO3C031040.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
CPU27656.1	2.05e-04	59.52	Uncharacterised protein [Mycobacteroides abscessus] >SKT63484.1 Uncharacterised ...	[more]
SKU43528.1	4.44e-04	59.52	Uncharacterised protein [Mycobacteroides abscessus subsp. abscessus]	[more]

BLAST of MELO3C031040.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C031040.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2P2PLH3	6.29e-06	68.09	Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1	[more]
A0A1U1FU24	2.15e-04	59.52	Uncharacterized protein OS=Mycobacteroides abscessus subsp. abscessus OX=1185650...	[more]

BLAST of MELO3C031040.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C031040.jh1.t1	MELO3C031040.jh1.t1	mRNA