MELO3C030962 (gene) Melon (DHL92) v4

Overview
NameMELO3C030962
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionTranscriptional adapter ADA2-like isoform X2
Locationchr04: 26717635 .. 26717916 (+)
RNA-Seq ExpressionMELO3C030962
SyntenyMELO3C030962
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGAGGAACTCTTGAATGGTCACACAAACACTTCTTTGGCCAGCAAAACTAACATTGAACTCTGGCAGGAAAGAGCACCACACATTCTGCGCATACTGACACTCTCAAAAGAGATGATCAAGGTCTTCCTTCACCTTCTGACAAAGAATACAACAAAAAGGCCCAGCAAGGAATGTCCTCCTCCTGACAAGCTTATCAACACTATTCACACGACCAAGCAAGACTTGCCAAATAAAGACCTAGCTTTCTTCAGGACCTTAATCCTCCAGACAACATAA

mRNA sequence

ATGGAGGAGGAACTCTTGAATGGTCACACAAACACTTCTTTGGCCAGCAAAACTAACATTGAACTCTGGCAGGAAAGAGCACCACACATTCTGCGCATACTGACACTCTCAAAAGAGATGATCAAGGTCTTCCTTCACCTTCTGACAAAGAATACAACAAAAAGGCCCAGCAAGGAATGTCCTCCTCCTGACAAGCTTATCAACACTATTCACACGACCAAGCAAGACTTGCCAAATAAAGACCTAGCTTTCTTCAGGACCTTAATCCTCCAGACAACATAA

Coding sequence (CDS)

ATGGAGGAGGAACTCTTGAATGGTCACACAAACACTTCTTTGGCCAGCAAAACTAACATTGAACTCTGGCAGGAAAGAGCACCACACATTCTGCGCATACTGACACTCTCAAAAGAGATGATCAAGGTCTTCCTTCACCTTCTGACAAAGAATACAACAAAAAGGCCCAGCAAGGAATGTCCTCCTCCTGACAAGCTTATCAACACTATTCACACGACCAAGCAAGACTTGCCAAATAAAGACCTAGCTTTCTTCAGGACCTTAATCCTCCAGACAACATAA

Protein sequence

MEEELLNGHTNTSLASKTNIELWQERAPHILRILTLSKEMIKVFLHLLTKNTTKRPSKECPPPDKLINTIHTTKQDLPNKDLAFFRTLILQTT
Homology
[Close]
BLAST of MELO3C030962 vs. NCBI nr
Match: TYK13990.1 (uncharacterized protein E5676_scaffold1119G00150 [Cucumis melo var. makuwa])

HSP 1 Score: 186.8 bits (473), Expect = 8.4e-44
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0 

Query: 1  MEEELLNGHTNTSLASKTNIELWQERAPHILRILTLSKEMIKVFLHLLTKNTTKRPSKEC 60
          MEEELLNGHTNTSLASKTNIELWQERAPHILRILTLSKEMIKVFLHLLTKNTTKRPSKEC
Sbjct: 1  MEEELLNGHTNTSLASKTNIELWQERAPHILRILTLSKEMIKVFLHLLTKNTTKRPSKEC 60

Query: 61 PPPDKLINTIHTTKQDLPNKDLAFFRTLILQTT 94
          PPPDKLINTIHTTKQDLPNKDLAFFRTLILQTT
Sbjct: 61 PPPDKLINTIHTTKQDLPNKDLAFFRTLILQTT 93

[Close]
BLAST of MELO3C030962 vs. NCBI nr
Match: KAA0034037.1 (protein IN2-1-like protein B [Cucumis melo var. makuwa])

HSP 1 Score: 58.2 bits (139), Expect = 4.5e-05
Identity = 27/51 (52.94%), Postives = 37/51 (72.55%), Query Frame = 0 

Query: 36  LSKEMIKVFLHLLTKNTTKRPSKECPPPDKLINTIHTTKQDLPNKDLAFFR 87
           L K++IKVF  L TK   KRP+K   PP+KL+N+++ TKQDLP+K+  F R
Sbjct: 234 LQKKIIKVFFRLPTKQAAKRPNKRSLPPNKLVNSVNPTKQDLPDKEPDFLR 284

[Close]
BLAST of MELO3C030962 vs. NCBI nr
Match: TYK23071.1 (transcriptional adapter ADA2-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 56.2 bits (134), Expect = 1.7e-04
Identity = 31/53 (58.49%), Postives = 40/53 (75.47%), Query Frame = 0 

Query: 1   MEEELLNGHTNTSLASKTNIELWQERAPHILRILTLSKEMIKVFLHLLTKNTT 54
           MEEEL +  TN SLA++  ++  Q+RA H L ILT+SK+MIKVFL L TK+TT
Sbjct: 114 MEEELRDCPTNGSLANQAKVKFLQKRALHGLNILTISKKMIKVFLRLPTKDTT 166

[Close]
BLAST of MELO3C030962 vs. ExPASy TrEMBL
Match: A0A5D3CRG7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1119G00150 PE=4 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 4.1e-44
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0 

Query: 1  MEEELLNGHTNTSLASKTNIELWQERAPHILRILTLSKEMIKVFLHLLTKNTTKRPSKEC 60
          MEEELLNGHTNTSLASKTNIELWQERAPHILRILTLSKEMIKVFLHLLTKNTTKRPSKEC
Sbjct: 1  MEEELLNGHTNTSLASKTNIELWQERAPHILRILTLSKEMIKVFLHLLTKNTTKRPSKEC 60

Query: 61 PPPDKLINTIHTTKQDLPNKDLAFFRTLILQTT 94
          PPPDKLINTIHTTKQDLPNKDLAFFRTLILQTT
Sbjct: 61 PPPDKLINTIHTTKQDLPNKDLAFFRTLILQTT 93

[Close]
BLAST of MELO3C030962 vs. ExPASy TrEMBL
Match: A0A5A7SXP4 (Protein IN2-1-like protein B OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G00210 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.2e-05
Identity = 27/51 (52.94%), Postives = 37/51 (72.55%), Query Frame = 0 

Query: 36  LSKEMIKVFLHLLTKNTTKRPSKECPPPDKLINTIHTTKQDLPNKDLAFFR 87
           L K++IKVF  L TK   KRP+K   PP+KL+N+++ TKQDLP+K+  F R
Sbjct: 234 LQKKIIKVFFRLPTKQAAKRPNKRSLPPNKLVNSVNPTKQDLPDKEPDFLR 284

[Close]
BLAST of MELO3C030962 vs. ExPASy TrEMBL
Match: A0A5D3DHD5 (Transcriptional adapter ADA2-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G00430 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 8.3e-05
Identity = 31/53 (58.49%), Postives = 40/53 (75.47%), Query Frame = 0 

Query: 1   MEEELLNGHTNTSLASKTNIELWQERAPHILRILTLSKEMIKVFLHLLTKNTT 54
           MEEEL +  TN SLA++  ++  Q+RA H L ILT+SK+MIKVFL L TK+TT
Sbjct: 114 MEEELRDCPTNGSLANQAKVKFLQKRALHGLNILTISKKMIKVFLRLPTKDTT 166

The following BLAST results are available for this feature:
BLAST of MELO3C030962 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK13990.18.4e-44100.00uncharacterized protein E5676_scaffold1119G00150 [Cucumis melo var. makuwa][more]
KAA0034037.14.5e-0552.94protein IN2-1-like protein B [Cucumis melo var. makuwa][more]
TYK23071.11.7e-0458.49transcriptional adapter ADA2-like isoform X2 [Cucumis melo var. makuwa][more]
BLAST of MELO3C030962 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C030962 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CRG74.1e-44100.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7SXP42.2e-0552.94Protein IN2-1-like protein B OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca... [more]
A0A5D3DHD58.3e-0558.49Transcriptional adapter ADA2-like isoform X2 OS=Cucumis melo var. makuwa OX=1194... [more]
BLAST of MELO3C030962 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C030962.1MELO3C030962.1mRNA