MELO3C030936 (gene) Melon (DHL92) v4

Overview


Name	MELO3C030936
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Unknown protein
Location	chr04: 24664525 .. 24666063 (+)
RNA-Seq Expression	MELO3C030936
Synteny	MELO3C030936

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTAAAATACAAGCATAAAATATTCTTCCCAAACACTTATACATAACCCTAGCTTTAGCTCCCTCTATAATATAAGGCAGTATACATGAGAGCTATGGCTATGGCTATGGCTATACCCTAGCGAAGAAAAAGGGTTGGTGAATTAGGGTTGTGCCCAGCTAATATCATATCATATCATAAAAATGGGAGTATATGCATGCCTCCTAATTTCCCTCTTATTAATTCTTCAAACTGTTTGGATTTCATCCCTTTCTAATGCTTCCAATAATTCTTTTCAATATGAATCTCTTTCCAACCCTCCTCTTCAAACCCATCATCAACAACAACTACTTTTGGGTGAGATTATACTTATTTAAAACCTCTTTATTTCCTTTTCATTTTTGTTTTTTTATTTATTGGTTTCTAAGTTTTGTTTACAACTACACGATTTCAAATGGTTTAAAATCGTGCTGGTTGTCTCTTTGTCCGAAAATATATAGAAAGAGTACTCTTCTTTATCTCCATGGAAGATTAATATTTTGTTTTGATTAAAATATCATTTTGATCAAATATTTTGAATCTTTTAATATATTTATAATAATTTTGGTTTATTAACTTTTAAAATTATTAATATTTAATATGAGTTTATTATTGTTTATTAAAATAAAGGGGGGGATTTTGTTGATATTTTCTTTATAAATCAACCGAATATATTTACATACTGTGTCTTTTCTATTATAGTTATTATTTAACTAATTTTGATAAGATTTTTAGAAAATAAAATGATCAAAATCCGATAATTAAAAATACATTATGTCATGTAACTATACAAAAATAACATATGGAATTTGATATTATTTTTTATTTCATCATATATGTCTTGACTTTGATACTAACTAACAATTTTTTTGTTGAGGTTTAAAATTAAGGTTCCATTCAATAACTATTTTGTTTATTTATTTTTTCAGAAAGTTCTGCAAAATTAAAATAAAATTATTTCAAACATTTACTTTTGTTATTTAAGATTATGAAATCCGTGAATGATGAGGAATCCTAATAACTAATTAATTAATGGATTAATTTGTTCCTTAATTATTTAATTTTTTCTTTTTTTTCTTTTGGGTTTGGAGTGAAAGGAGGCCGTGGCAAAGAAGAGAATAATAAGACGGCGGAGAGTTGGACTGTTTTAAAGGCTAAAGGGGGAAGGTCCGGCGCCGGCGGGGCAGGAGCCAACAACCACCGGCCGGGAAAGGCGAAGAACGCAGCTTCCACTTTGATGAACTCAAATAATAACATAATGATAATTACCACTTTCCTCCTCTCTTCCTTTTTATACTTGTTTTAAATTTTCTTTTTTTCGTTCATTTCTATGTGGAATAATATCAAAACCTATTTATATATATATACACACATACATCTTTTTGTTTGAGTAAATTTTTGTAATCCCAAACTACCTCAATTTATCAATATACACGTATATATATACATATATGGATCTTGTTTTAGTTATACAACAATTGGAGTAATAAGATACGAAAAACACATAACAAATTTCATGTTA

mRNA sequence

CTAAAATACAAGCATAAAATATTCTTCCCAAACACTTATACATAACCCTAGCTTTAGCTCCCTCTATAATATAAGGCAGTATACATGAGAGCTATGGCTATGGCTATGGCTATACCCTAGCGAAGAAAAAGGGTTGGTGAATTAGGGTTGTGCCCAGCTAATATCATATCATATCATAAAAATGGGAGTATATGCATGCCTCCTAATTTCCCTCTTATTAATTCTTCAAACTGTTTGGATTTCATCCCTTTCTAATGCTTCCAATAATTCTTTTCAATATGAATCTCTTTCCAACCCTCCTCTTCAAACCCATCATCAACAACAACTACTTTTGGTGAAAGGAGGCCGTGGCAAAGAAGAGAATAATAAGACGGCGGAGAGTTGGACTGTTTTAAAGGCTAAAGGGGGAAGGTCCGGCGCCGGCGGGGCAGGAGCCAACAACCACCGGCCGGGAAAGGCGAAGAACGCAGCTTCCACTTTGATGAACTCAAATAATAACATAATGATAATTACCACTTTCCTCCTCTCTTCCTTTTTATACTTGTTTTAAATTTTCTTTTTTTCGTTCATTTCTATGTGGAATAATATCAAAACCTATTTATATATATATACACACATACATCTTTTTGTTTGAGTAAATTTTTGTAATCCCAAACTACCTCAATTTATCAATATACACGTATATATATACATATATGGATCTTGTTTTAGTTATACAACAATTGGAGTAATAAGATACGAAAAACACATAACAAATTTCATGTTA

Coding sequence (CDS)

ATGGGAGTATATGCATGCCTCCTAATTTCCCTCTTATTAATTCTTCAAACTGTTTGGATTTCATCCCTTTCTAATGCTTCCAATAATTCTTTTCAATATGAATCTCTTTCCAACCCTCCTCTTCAAACCCATCATCAACAACAACTACTTTTGGTGAAAGGAGGCCGTGGCAAAGAAGAGAATAATAAGACGGCGGAGAGTTGGACTGTTTTAAAGGCTAAAGGGGGAAGGTCCGGCGCCGGCGGGGCAGGAGCCAACAACCACCGGCCGGGAAAGGCGAAGAACGCAGCTTCCACTTTGATGAACTCAAATAATAACATAATGATAATTACCACTTTCCTCCTCTCTTCCTTTTTATACTTGTTTTAA

Protein sequence

MGVYACLLISLLLILQTVWISSLSNASNNSFQYESLSNPPLQTHHQQQLLLVKGGRGKEENNKTAESWTVLKAKGGRSGAGGAGANNHRPGKAKNAASTLMNSNNNIMIITTFLLSSFLYLF

Homology

[Close]

BLAST of MELO3C030936 vs. NCBI nr
Match: KGN58897.2 (hypothetical protein Csa_001334 [Cucumis sativus])

HSP 1 Score: 187.2 bits (474), Expect = 8.5e-44
Identity = 110/124 (88.71%), Postives = 112/124 (90.32%), Query Frame = 0


Query: 1   MGVYACLLISLLLILQTVWISSLSNASNNSFQYESLSNPPLQTHHQQQLLLVKGGRGKEE 60
           MGVYACLLISLLLILQTVWISSLSNASNNSF YESLSNPPLQTHH  Q   + GG GKEE
Sbjct: 1   MGVYACLLISLLLILQTVWISSLSNASNNSFPYESLSNPPLQTHHLHQQPRL-GGGGKEE 60

Query: 61  NNKT-AESWTVLKAK-GGRSGAGGAGANNHRPGKAKNAASTLMNSNNNIMIITTFLLSSF 120
           NNKT AESWTV KAK GGRSGAGGAGANNHRPGKAKNAASTLMNSNNNI+IITT LLSSF
Sbjct: 61  NNKTAAESWTVSKAKGGGRSGAGGAGANNHRPGKAKNAASTLMNSNNNIIIITTLLLSSF 120

Query: 121 LYLF 123
           LYLF
Sbjct: 121 LYLF 123

[Close]

BLAST of MELO3C030936 vs. NCBI nr
Match: KAG6581619.1 (hypothetical protein SDJN03_21621, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 95.5 bits (236), Expect = 3.3e-16
Identity = 70/122 (57.38%), Postives = 78/122 (63.93%), Query Frame = 0


Query: 1   MGVYACLLISLLLILQTVWISSLSNASNNSFQYESLSNPPLQTHHQQQLLLVKGGRGKEE 60
           MGVYACLLISLLLI QT  ISSLSN S       S ++ PLQ HHQ    L+  GR   E
Sbjct: 1   MGVYACLLISLLLIFQTHSISSLSNGS-LPISNHSFNSQPLQHHHQ----LLVSGRDDGE 60

Query: 61  NNKTAESWTVLKAKGGRSGAGGAGANNHRPGKAKNAASTLMNSNNNIMIITTFLLSSFLY 120
            N T     VLKAKGGRSG+ GAG NNHRPGKAKNAA++L   N    II   L S+ L+
Sbjct: 61  ENTTTVKLVVLKAKGGRSGSAGAGTNNHRPGKAKNAAASLFEFN----IIYFVLNSAGLF 113

Query: 121 LF 123
           LF
Sbjct: 121 LF 113

[Close]

BLAST of MELO3C030936 vs. ExPASy TrEMBL
Match: A0A0A0LCI5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G710765 PE=4 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 1.5e-46
Identity = 114/125 (91.20%), Postives = 115/125 (92.00%), Query Frame = 0


Query: 1   MGVYACLLISLLLILQTVWISSLSNASNNSFQYESLSNPPLQTHH-QQQLLLVKGGRGKE 60
           MGVYACLLISLLLILQTVWISSLSNASNNSF YESLSNPPLQTHH  QQ  LVKGG GKE
Sbjct: 1   MGVYACLLISLLLILQTVWISSLSNASNNSFPYESLSNPPLQTHHLHQQPRLVKGGGGKE 60

Query: 61  ENNKT-AESWTVLKAK-GGRSGAGGAGANNHRPGKAKNAASTLMNSNNNIMIITTFLLSS 120
           ENNKT AESWTV KAK GGRSGAGGAGANNHRPGKAKNAASTLMNSNNNI+IITT LLSS
Sbjct: 61  ENNKTAAESWTVSKAKGGGRSGAGGAGANNHRPGKAKNAASTLMNSNNNIIIITTLLLSS 120

Query: 121 FLYLF 123
           FLYLF
Sbjct: 121 FLYLF 125

The following BLAST results are available for this feature:

BLAST of MELO3C030936 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN58897.2	8.5e-44	88.71	hypothetical protein Csa_001334 [Cucumis sativus]	[more]
KAG6581619.1	3.3e-16	57.38	hypothetical protein SDJN03_21621, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of MELO3C030936 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C030936 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCI5	1.5e-46	91.20	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G710765 PE=4 SV=1	[more]

BLAST of MELO3C030936 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C030936.1	MELO3C030936.1	mRNA