MELO3C030896.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C030896.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionCACTA en-spm transposon protein
Locationchr04: 21115736 .. 21116676 (-)
RNA-Seq ExpressionMELO3C030896.jh1
SyntenyMELO3C030896.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCATCGGGAATAGGGGGATCTCCCGACGTTTTCATGCTACATCGGGAGTTCCTATATAAAAAAGATGTTTCAGCGAAAGAGGAGAAAGTGAGATTATTTGGCGAAACGAAGAGAGGAGAAAGGAGATCGTTGCCATCACCGTTGTTTCTCTCGCTGTTGTGAGCCTGCCGTCGTGCCTCTCCCGTCGTCTGCCACCGCTCATCCCTATTTGAGATAATTTTAAAACCCTAAACCCTTAAATATTAGTTTAGGTTAGGTTAGTTTAAATAGTTTAGTTTTTTGTTTTTTGAAATTAGTTTTACGATTTTAATGATGAATTAGTTTTAGGATATTATTTAGGAATAGATTTTGGTTTTTGAAGTTGAAATTTTGAATGTGGGTTGAAAATGGGGAGGGAGGTTATTTGAGAAATTGATTTGGAGAATTAAAAATTTGAATGTATGGGTTGAATTTGAAGAGGGGGAGGGGGTTTAATTGAATATTTGAAGGGGATGGGTTGAAAATTGAGAGGAGAGAGGGGTTGAATTAAAAATTTGATGGGGGATTGAATTGAAATTTTGAAAGTTATGGTAGCCTTTTTTGTTTTGAATTTGTTTGTATTTCTGAGGGTTTGAAGGGGTGGTAGTAGGATAGCTTGTAAGGTAGCATTGTTGAAAGAAGTGGGTAGGACGATATGAGGATTGTCACTACCTCTGTGACTACTACATGAGCCGTGCATTTTAGGTGAGCAACTGGACCCTTTGTCATGGTTAATTATGATTTCAACTTTTAATATGTATAAGAAATAAATAATATAATTGTTTTCATGCAGGAGCAATCACAGACAAACAATGCTGCTAAACAGAAGTAGCCTTACAATCATAGTAGCGGGTCAAAGTCGTTTCTACAACGACAACATGAGCTTGATGAGCAAAGAGGGAAGCTGGTTGACCGTGTGA

mRNA sequence

ATGGCATCGGGAATAGGGGGATCTCCCGACGTTTTCATGCTACATCGGGAAGAGGAGAAAGGAGATCGTTGCCATCACCGTTGTTTCTCTCGCTGTTGTGAGCCTGCCGTCGTGCCTCTCCCGTCGTCTGCCACCGCTCATCCCTATTTGAGGAGCAATCACAGACAAACAATGCTGCTAAACAGAAGTAGCCTTACAATCATAGTAGCGGGTCAAAGTCGTTTCTACAACGACAACATGAGCTTGATGAGCAAAGAGGGAAGCTGGTTGACCGTGTGA

Coding sequence (CDS)

ATGGCATCGGGAATAGGGGGATCTCCCGACGTTTTCATGCTACATCGGGAAGAGGAGAAAGGAGATCGTTGCCATCACCGTTGTTTCTCTCGCTGTTGTGAGCCTGCCGTCGTGCCTCTCCCGTCGTCTGCCACCGCTCATCCCTATTTGAGGAGCAATCACAGACAAACAATGCTGCTAAACAGAAGTAGCCTTACAATCATAGTAGCGGGTCAAAGTCGTTTCTACAACGACAACATGAGCTTGATGAGCAAAGAGGGAAGCTGGTTGACCGTGTGA

Protein sequence

MASGIGGSPDVFMLHREEEKGDRCHHRCFSRCCEPAVVPLPSSATAHPYLRSNHRQTMLLNRSSLTIIVAGQSRFYNDNMSLMSKEGSWLTV
Homology
BLAST of MELO3C030896.jh1 vs. NCBI nr
Match: KAA0059554.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa] >TYK29970.1 NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 79.0 bits (193), Expect = 8.61e-17
Identity = 40/71 (56.34%), Postives = 49/71 (69.01%), Query Frame = 0

Query: 23 RCHHRCFS-RCCEPAVVPLPSSATAHPYLRSNHRQTMLLNRSSLTIIVAGQSRFYNDNMS 82
          R   RC S RC +P VVP  SS  AH YLRSNH +T LLN+S+LTIIVAG+S FYND+M 
Sbjct: 6  RVCRRCISFRCRDPVVVPFLSSVVAHLYLRSNHGRTKLLNKSNLTIIVAGRSHFYNDSMG 65

Query: 83 LMSKEGSWLTV 92
           +S +   L +
Sbjct: 66 SLSNKNQMLEL 76

BLAST of MELO3C030896.jh1 vs. NCBI nr
Match: KAA0039106.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK25977.1 CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 67.4 bits (163), Expect = 5.24e-11
Identity = 32/42 (76.19%), Postives = 36/42 (85.71%), Query Frame = 0

Query: 51  RSNHRQTMLLNRSSLTIIVAGQSRFYNDNMSLMSKEGSWLTV 92
           RSNH +T LL+RSSLTIIV GQSRFYNDN S +SKEGSW T+
Sbjct: 123 RSNHGRTRLLDRSSLTIIVEGQSRFYNDNTSSLSKEGSWSTM 164

BLAST of MELO3C030896.jh1 vs. NCBI nr
Match: KAA0036188.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa] >TYK19732.1 NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 62.0 bits (149), Expect = 2.29e-09
Identity = 30/47 (63.83%), Postives = 38/47 (80.85%), Query Frame = 0

Query: 43  SATAHPYLRSNHRQTMLLNRSSLTIIVAGQSRFYNDNMSLMSKEGSW 89
           + T+  + RSNH +T LL+RSSLTIIVAG+S FYND+ SL+SKE SW
Sbjct: 95  TTTSVVHSRSNHGRTRLLDRSSLTIIVAGRSHFYNDSTSLLSKEESW 141

BLAST of MELO3C030896.jh1 vs. NCBI nr
Match: TYK05479.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 63.2 bits (152), Expect = 3.81e-09
Identity = 30/44 (68.18%), Postives = 36/44 (81.82%), Query Frame = 0

Query: 49  YLRSNHRQTMLLNRSSLTIIVAGQSRFYNDNMSLMSKEGSWLTV 92
           + +SNH +T LL+RS+LTII  GQSRFYNDN S +SKEGS LTV
Sbjct: 268 FKKSNHGRTRLLDRSNLTIIAVGQSRFYNDNTSTLSKEGSGLTV 311

BLAST of MELO3C030896.jh1 vs. NCBI nr
Match: KAA0042261.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 62.8 bits (151), Expect = 4.36e-09
Identity = 29/41 (70.73%), Postives = 35/41 (85.37%), Query Frame = 0

Query: 52  SNHRQTMLLNRSSLTIIVAGQSRFYNDNMSLMSKEGSWLTV 92
           SNH +T LL+RSSLT+IVAGQ+RFYNDN S + K+GSW TV
Sbjct: 161 SNHGRTRLLDRSSLTMIVAGQNRFYNDNTSSLRKKGSWSTV 201

BLAST of MELO3C030896.jh1 vs. ExPASy TrEMBL
Match: A0A5A7UWT5 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1449G00050 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 4.17e-17
Identity = 40/71 (56.34%), Postives = 49/71 (69.01%), Query Frame = 0

Query: 23 RCHHRCFS-RCCEPAVVPLPSSATAHPYLRSNHRQTMLLNRSSLTIIVAGQSRFYNDNMS 82
          R   RC S RC +P VVP  SS  AH YLRSNH +T LLN+S+LTIIVAG+S FYND+M 
Sbjct: 6  RVCRRCISFRCRDPVVVPFLSSVVAHLYLRSNHGRTKLLNKSNLTIIVAGRSHFYNDSMG 65

Query: 83 LMSKEGSWLTV 92
           +S +   L +
Sbjct: 66 SLSNKNQMLEL 76

BLAST of MELO3C030896.jh1 vs. ExPASy TrEMBL
Match: A0A5A7TAN5 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1441G00380 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.54e-11
Identity = 32/42 (76.19%), Postives = 36/42 (85.71%), Query Frame = 0

Query: 51  RSNHRQTMLLNRSSLTIIVAGQSRFYNDNMSLMSKEGSWLTV 92
           RSNH +T LL+RSSLTIIV GQSRFYNDN S +SKEGSW T+
Sbjct: 123 RSNHGRTRLLDRSSLTIIVEGQSRFYNDNTSSLSKEGSWSTM 164

BLAST of MELO3C030896.jh1 vs. ExPASy TrEMBL
Match: A0A5A7T023 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold214G00390 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.11e-09
Identity = 30/47 (63.83%), Postives = 38/47 (80.85%), Query Frame = 0

Query: 43  SATAHPYLRSNHRQTMLLNRSSLTIIVAGQSRFYNDNMSLMSKEGSW 89
           + T+  + RSNH +T LL+RSSLTIIVAG+S FYND+ SL+SKE SW
Sbjct: 95  TTTSVVHSRSNHGRTRLLDRSSLTIIVAGRSHFYNDSTSLLSKEESW 141

BLAST of MELO3C030896.jh1 vs. ExPASy TrEMBL
Match: A0A5D3C513 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold83G001850 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.84e-09
Identity = 30/44 (68.18%), Postives = 36/44 (81.82%), Query Frame = 0

Query: 49  YLRSNHRQTMLLNRSSLTIIVAGQSRFYNDNMSLMSKEGSWLTV 92
           + +SNH +T LL+RS+LTII  GQSRFYNDN S +SKEGS LTV
Sbjct: 268 FKKSNHGRTRLLDRSNLTIIAVGQSRFYNDNTSTLSKEGSGLTV 311

BLAST of MELO3C030896.jh1 vs. ExPASy TrEMBL
Match: A0A5A7TL03 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold824G00440 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.11e-09
Identity = 29/41 (70.73%), Postives = 35/41 (85.37%), Query Frame = 0

Query: 52  SNHRQTMLLNRSSLTIIVAGQSRFYNDNMSLMSKEGSWLTV 92
           SNH +T LL+RSSLT+IVAGQ+RFYNDN S + K+GSW TV
Sbjct: 161 SNHGRTRLLDRSSLTMIVAGQNRFYNDNTSSLRKKGSWSTV 201

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0059554.18.61e-1756.34NBS-LRR type resistance protein [Cucumis melo var. makuwa] >TYK29970.1 NBS-LRR t... [more]
KAA0039106.15.24e-1176.19CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK25977.1 CACTA en-... [more]
KAA0036188.12.29e-0963.83NBS-LRR type resistance protein [Cucumis melo var. makuwa] >TYK19732.1 NBS-LRR t... [more]
TYK05479.13.81e-0968.18CACTA en-spm transposon protein [Cucumis melo var. makuwa][more]
KAA0042261.14.36e-0970.73CACTA en-spm transposon protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7UWT54.17e-1756.34NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A5A7TAN52.54e-1176.19CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A5A7T0231.11e-0963.83NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A5D3C5131.84e-0968.18CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A5A7TL032.11e-0970.73CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C030896.jh1.t1MELO3C030896.jh1.t1mRNA