MELO3C030889 (gene) Melon (DHL92) v4

Overview


Name	MELO3C030889
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr03: 1587420 .. 1588221 (+)
RNA-Seq Expression	MELO3C030889
Synteny	MELO3C030889

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGAAATTGCTCGTCTAATTAGCTCTAATTATATTACATGGGAAAATCAAATAAAAAGCTTCTTAATTGGACAAAAATTATGGCGTATTGTCACAGGTGATATTACCAAGCCGACCAAACAAGACAAGGAAGATGATGACAAATTTATCGAACACCTTGAAGAATGGGACAACAAAAATCATCAGATTATCACCTGGCTTAGTAACACATCAATTCCTGCTATCTATACACAATTTGATGCTTCTAAAAGTGCTAAGGAGTTATGGGATTTTCTGTCTACACGATTTAAGTCCGTCGGATTAGTGCATTACTATCAGTTGCACAATAATCTTGTTAATCTTAATCAAGAAGCTGGTCAATCAGTCAATGAGTAATTAGTCATGCTTCAACCTATCTGGACTCAACATGATCAAGCTAAAATTAGTAAAGATCATCTTCGTCTTATTAAAGTCCTTATGGGACTTCGTCCAGAATATGAATCTGTTAGGACTACCTTGTTACACCGCAGTCCCTTGCCCTCATTGGATACTGCTATCCAAGAAATATTATTTGAAGAAAAACATCTTGGCATCAATCTCTCTAAACATTCTGATGTTGTTCTTGCCAGCACTTATTCACCACCTAGAGCATCAAGCACATTTTGTAAGAATTGTAAGCTCACTGGTCATCAATTTATTGATTGTCCTAAAATAGAATGCAGGTACTGCTATAAACTAGGTCATATTATGGATAATTGTCCCATAAAACCACCTCGACCTCGAAGCTATTCTACAAGAGCAAAGAACTTCACTAAACCCAGGAA

mRNA sequence

GTGAAATTGCTCGTCTAATTAGCTCTAATTATATTACATGGGAAAATCAAATAAAAAGCTTCTTAATTGGACAAAAATTATGGCGTATTGTCACAGGTGATATTACCAAGCCGACCAAACAAGACAAGGAAGATGATGACAAATTTATCGAACACCTTGAAGAATGGGACAACAAAAATCATCAGATTATCACCTGGCTTAGTAACACATCAATTCCTGCTATCTATACACAATTTGATGCTTCTAAAAGTGCTAAGGAGTTATGGGATTTTCTGTCTACACGATTTAAGTCCGTCGGATTAGTGCATTACTATCAGTTGCACAATAATCTTGTTAATCTTAATCAAGAAGCTGGTCAATCAGTCAATGAGTAATTAGTCATGCTTCAACCTATCTGGACTCAACATGATCAAGCTAAAATTAGTAAAGATCATCTTCGTCTTATTAAAGTCCTTATGGGACTTCGTCCAGAATATGAATCTGTTAGGACTACCTTGTTACACCGCAGTCCCTTGCCCTCATTGGATACTGCTATCCAAGAAATATTATTTGAAGAAAAACATCTTGGCATCAATCTCTCTAAACATTCTGATGTTGTTCTTGCCAGCACTTATTCACCACCTAGAGCATCAAGCACATTTTGTAAGAATTGTAAGCTCACTGGTCATCAATTTATTGATTGTCCTAAAATAGAATGCAGGTACTGCTATAAACTAGGTCATATTATGGATAATTGTCCCATAAAACCACCTCGACCTCGAAGCTATTCTACAAGAGCAAAGAACTTCACTAAACCCAGGAA

Coding sequence (CDS)

ATGCTTCAACCTATCTGGACTCAACATGATCAAGCTAAAATTAGTAAAGATCATCTTCGTCTTATTAAAGTCCTTATGGGACTTCGTCCAGAATATGAATCTGTTAGGACTACCTTGTTACACCGCAGTCCCTTGCCCTCATTGGATACTGCTATCCAAGAAATATTATTTGAAGAAAAACATCTTGGCATCAATCTCTCTAAACATTCTGATGTTGTTCTTGCCAGCACTTATTCACCACCTAGAGCATCAAGCACATTTTGTAAGAATTGTAAGCTCACTGGTCATCAATTTATTGATTGTCCTAAAATAGAATGCAGGTACTGCTATAAACTAGGTCATATTATGGATAATTGTCCCATAAAACCACCTCGACCTCGAAGCTATTCTACAAGAGCAAAGAACTTCACTAAACCCAGG

Protein sequence

MLQPIWTQHDQAKISKDHLRLIKVLMGLRPEYESVRTTLLHRSPLPSLDTAIQEILFEEKHLGINLSKHSDVVLASTYSPPRASSTFCKNCKLTGHQFIDCPKIECRYCYKLGHIMDNCPIKPPRPRSYSTRAKNFTKPR

Homology

[Close]

BLAST of MELO3C030889 vs. NCBI nr
Match: KAA0032344.1 (uncharacterized protein E6C27_scaffold219G002060 [Cucumis melo var. makuwa] >TYK31617.1 uncharacterized protein E5676_scaffold340G00040 [Cucumis melo var. makuwa])

HSP 1 Score: 269.6 bits (688), Expect = 1.5e-68
Identity = 127/140 (90.71%), Postives = 133/140 (95.00%), Query Frame = 0


Query: 1   MLQPIWTQHDQAKISKDHLRLIKVLMGLRPEYESVRTTLLHRSPLPSLDTAIQEILFEEK 60
           +LQPIWTQ DQAKISKDHLRLIKVLMGLRPEYESV+  LLHRSPLPSLD AIQEILFEEK
Sbjct: 111 VLQPIWTQLDQAKISKDHLRLIKVLMGLRPEYESVKAALLHRSPLPSLDAAIQEILFEEK 170

Query: 61  HLGINLSKHSDVVLASTYSPPRASSTFCKNCKLTGHQFIDCPKIECRYCYKLGHIMDNCP 120
            LGINLSKHSDVVLASTYSPP ASSTFCKNCKLTGH+FIDCPKIECRYC+K GHI++NCP
Sbjct: 171 RLGINLSKHSDVVLASTYSPPGASSTFCKNCKLTGHKFIDCPKIECRYCHKRGHILNNCP 230

Query: 121 IKPPRPRSYSTRAKNFTKPR 141
           IKPPRPRSYSTRAKNFTKPR
Sbjct: 231 IKPPRPRSYSTRAKNFTKPR 250

[Close]

BLAST of MELO3C030889 vs. NCBI nr
Match: XP_008441928.1 (PREDICTED: uncharacterized protein LOC103485923 [Cucumis melo])

HSP 1 Score: 269.6 bits (688), Expect = 1.5e-68
Identity = 127/140 (90.71%), Postives = 133/140 (95.00%), Query Frame = 0


Query: 1   MLQPIWTQHDQAKISKDHLRLIKVLMGLRPEYESVRTTLLHRSPLPSLDTAIQEILFEEK 60
           +LQPIWTQ DQAKISKDHLRLIKVLMGLRPEYESV+  LLHRSPLPSLD AIQEILFEEK
Sbjct: 111 VLQPIWTQLDQAKISKDHLRLIKVLMGLRPEYESVKAALLHRSPLPSLDAAIQEILFEEK 170

Query: 61  HLGINLSKHSDVVLASTYSPPRASSTFCKNCKLTGHQFIDCPKIECRYCYKLGHIMDNCP 120
            LGINLSKHSDVVLASTYSPP ASSTFCKNCKLTGH+FIDCPKIECRYC+K GHI++NCP
Sbjct: 171 RLGINLSKHSDVVLASTYSPPGASSTFCKNCKLTGHKFIDCPKIECRYCHKRGHILNNCP 230

Query: 121 IKPPRPRSYSTRAKNFTKPR 141
           IKPPRPRSYSTRAKNFTKPR
Sbjct: 231 IKPPRPRSYSTRAKNFTKPR 250

[Close]

BLAST of MELO3C030889 vs. NCBI nr
Match: KAA0051863.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 266.9 bits (681), Expect = 9.6e-68
Identity = 126/140 (90.00%), Postives = 131/140 (93.57%), Query Frame = 0


Query: 1   MLQPIWTQHDQAKISKDHLRLIKVLMGLRPEYESVRTTLLHRSPLPSLDTAIQEILFEEK 60
           +LQPIWTQ DQA ISKDHLRLIKVLMGLRPEYESV+  LLHRSPLPSLD AIQEILFEEK
Sbjct: 54  VLQPIWTQLDQANISKDHLRLIKVLMGLRPEYESVKAALLHRSPLPSLDAAIQEILFEEK 113

Query: 61  HLGINLSKHSDVVLASTYSPPRASSTFCKNCKLTGHQFIDCPKIECRYCYKLGHIMDNCP 120
            LGINLSKHSDVVLASTYSPP ASSTFCKNCKLTGH+FIDCPKIECRYC+K GHI+DNCP
Sbjct: 114 RLGINLSKHSDVVLASTYSPPGASSTFCKNCKLTGHKFIDCPKIECRYCHKPGHILDNCP 173

Query: 121 IKPPRPRSYSTRAKNFTKPR 141
           IKPPRPRSYST AKNFTKPR
Sbjct: 174 IKPPRPRSYSTSAKNFTKPR 193

[Close]

BLAST of MELO3C030889 vs. NCBI nr
Match: TYK21374.1 (Zinc finger, CCHC-type [Cucumis melo var. makuwa])

HSP 1 Score: 266.9 bits (681), Expect = 9.6e-68
Identity = 126/140 (90.00%), Postives = 131/140 (93.57%), Query Frame = 0


Query: 1   MLQPIWTQHDQAKISKDHLRLIKVLMGLRPEYESVRTTLLHRSPLPSLDTAIQEILFEEK 60
           +LQPIWTQ DQA ISKDHLRLIKVLMGLRPEYESV+  LLHRSPLPSLD AIQEILFEEK
Sbjct: 54  VLQPIWTQLDQANISKDHLRLIKVLMGLRPEYESVKAALLHRSPLPSLDAAIQEILFEEK 113

Query: 61  HLGINLSKHSDVVLASTYSPPRASSTFCKNCKLTGHQFIDCPKIECRYCYKLGHIMDNCP 120
            LGINLSKHSDVVLASTYSPP ASSTFCKNCKLTGH+FIDCPKIECRYC+K GHI+DNCP
Sbjct: 114 RLGINLSKHSDVVLASTYSPPGASSTFCKNCKLTGHKFIDCPKIECRYCHKPGHILDNCP 173

Query: 121 IKPPRPRSYSTRAKNFTKPR 141
           IKPPRPRSYST AKNFTKPR
Sbjct: 174 IKPPRPRSYSTSAKNFTKPR 193

[Close]

BLAST of MELO3C030889 vs. NCBI nr
Match: KAA0063009.1 (Integrase, catalytic core [Cucumis melo var. makuwa])

HSP 1 Score: 266.5 bits (680), Expect = 1.3e-67
Identity = 127/140 (90.71%), Postives = 131/140 (93.57%), Query Frame = 0


Query: 1   MLQPIWTQHDQAKISKDHLRLIKVLMGLRPEYESVRTTLLHRSPLPSLDTAIQEILFEEK 60
           +LQPIWTQ DQAKISKDHLRLIKVLMGL PEYESVR  LLHRSPLPSLD AIQEILFEEK
Sbjct: 345 VLQPIWTQLDQAKISKDHLRLIKVLMGLPPEYESVRAALLHRSPLPSLDAAIQEILFEEK 404

Query: 61  HLGINLSKHSDVVLASTYSPPRASSTFCKNCKLTGHQFIDCPKIECRYCYKLGHIMDNCP 120
            LGINLSKHSDVVLASTYSPP ASSTFCKNCKLTGH+FIDCPKIECRYC+K GHI+DNCP
Sbjct: 405 RLGINLSKHSDVVLASTYSPPGASSTFCKNCKLTGHKFIDCPKIECRYCHKPGHILDNCP 464

Query: 121 IKPPRPRSYSTRAKNFTKPR 141
           IKPPRPRSYSTRAKNFTK R
Sbjct: 465 IKPPRPRSYSTRAKNFTKSR 484

[Close]

BLAST of MELO3C030889 vs. ExPASy TrEMBL
Match: A0A5A7SMD6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold340G00040 PE=4 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 7.2e-69
Identity = 127/140 (90.71%), Postives = 133/140 (95.00%), Query Frame = 0


Query: 1   MLQPIWTQHDQAKISKDHLRLIKVLMGLRPEYESVRTTLLHRSPLPSLDTAIQEILFEEK 60
           +LQPIWTQ DQAKISKDHLRLIKVLMGLRPEYESV+  LLHRSPLPSLD AIQEILFEEK
Sbjct: 111 VLQPIWTQLDQAKISKDHLRLIKVLMGLRPEYESVKAALLHRSPLPSLDAAIQEILFEEK 170

Query: 61  HLGINLSKHSDVVLASTYSPPRASSTFCKNCKLTGHQFIDCPKIECRYCYKLGHIMDNCP 120
            LGINLSKHSDVVLASTYSPP ASSTFCKNCKLTGH+FIDCPKIECRYC+K GHI++NCP
Sbjct: 171 RLGINLSKHSDVVLASTYSPPGASSTFCKNCKLTGHKFIDCPKIECRYCHKRGHILNNCP 230

Query: 121 IKPPRPRSYSTRAKNFTKPR 141
           IKPPRPRSYSTRAKNFTKPR
Sbjct: 231 IKPPRPRSYSTRAKNFTKPR 250

[Close]

BLAST of MELO3C030889 vs. ExPASy TrEMBL
Match: A0A1S3B566 (uncharacterized protein LOC103485923 OS=Cucumis melo OX=3656 GN=LOC103485923 PE=4 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 7.2e-69
Identity = 127/140 (90.71%), Postives = 133/140 (95.00%), Query Frame = 0


Query: 1   MLQPIWTQHDQAKISKDHLRLIKVLMGLRPEYESVRTTLLHRSPLPSLDTAIQEILFEEK 60
           +LQPIWTQ DQAKISKDHLRLIKVLMGLRPEYESV+  LLHRSPLPSLD AIQEILFEEK
Sbjct: 111 VLQPIWTQLDQAKISKDHLRLIKVLMGLRPEYESVKAALLHRSPLPSLDAAIQEILFEEK 170

Query: 61  HLGINLSKHSDVVLASTYSPPRASSTFCKNCKLTGHQFIDCPKIECRYCYKLGHIMDNCP 120
            LGINLSKHSDVVLASTYSPP ASSTFCKNCKLTGH+FIDCPKIECRYC+K GHI++NCP
Sbjct: 171 RLGINLSKHSDVVLASTYSPPGASSTFCKNCKLTGHKFIDCPKIECRYCHKRGHILNNCP 230

Query: 121 IKPPRPRSYSTRAKNFTKPR 141
           IKPPRPRSYSTRAKNFTKPR
Sbjct: 231 IKPPRPRSYSTRAKNFTKPR 250

[Close]

BLAST of MELO3C030889 vs. ExPASy TrEMBL
Match: A0A5A7U7G4 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G002990 PE=4 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 4.7e-68
Identity = 126/140 (90.00%), Postives = 131/140 (93.57%), Query Frame = 0


Query: 1   MLQPIWTQHDQAKISKDHLRLIKVLMGLRPEYESVRTTLLHRSPLPSLDTAIQEILFEEK 60
           +LQPIWTQ DQA ISKDHLRLIKVLMGLRPEYESV+  LLHRSPLPSLD AIQEILFEEK
Sbjct: 54  VLQPIWTQLDQANISKDHLRLIKVLMGLRPEYESVKAALLHRSPLPSLDAAIQEILFEEK 113

Query: 61  HLGINLSKHSDVVLASTYSPPRASSTFCKNCKLTGHQFIDCPKIECRYCYKLGHIMDNCP 120
            LGINLSKHSDVVLASTYSPP ASSTFCKNCKLTGH+FIDCPKIECRYC+K GHI+DNCP
Sbjct: 114 RLGINLSKHSDVVLASTYSPPGASSTFCKNCKLTGHKFIDCPKIECRYCHKPGHILDNCP 173

Query: 121 IKPPRPRSYSTRAKNFTKPR 141
           IKPPRPRSYST AKNFTKPR
Sbjct: 174 IKPPRPRSYSTSAKNFTKPR 193

[Close]

BLAST of MELO3C030889 vs. ExPASy TrEMBL
Match: A0A5D3DCR3 (Zinc finger, CCHC-type OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold609G00170 PE=4 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 4.7e-68
Identity = 126/140 (90.00%), Postives = 131/140 (93.57%), Query Frame = 0


Query: 1   MLQPIWTQHDQAKISKDHLRLIKVLMGLRPEYESVRTTLLHRSPLPSLDTAIQEILFEEK 60
           +LQPIWTQ DQA ISKDHLRLIKVLMGLRPEYESV+  LLHRSPLPSLD AIQEILFEEK
Sbjct: 54  VLQPIWTQLDQANISKDHLRLIKVLMGLRPEYESVKAALLHRSPLPSLDAAIQEILFEEK 113

Query: 61  HLGINLSKHSDVVLASTYSPPRASSTFCKNCKLTGHQFIDCPKIECRYCYKLGHIMDNCP 120
            LGINLSKHSDVVLASTYSPP ASSTFCKNCKLTGH+FIDCPKIECRYC+K GHI+DNCP
Sbjct: 114 RLGINLSKHSDVVLASTYSPPGASSTFCKNCKLTGHKFIDCPKIECRYCHKPGHILDNCP 173

Query: 121 IKPPRPRSYSTRAKNFTKPR 141
           IKPPRPRSYST AKNFTKPR
Sbjct: 174 IKPPRPRSYSTSAKNFTKPR 193

[Close]

BLAST of MELO3C030889 vs. ExPASy TrEMBL
Match: A0A5A7VBM6 (Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G001110 PE=4 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 6.1e-68
Identity = 127/140 (90.71%), Postives = 131/140 (93.57%), Query Frame = 0


Query: 1   MLQPIWTQHDQAKISKDHLRLIKVLMGLRPEYESVRTTLLHRSPLPSLDTAIQEILFEEK 60
           +LQPIWTQ DQAKISKDHLRLIKVLMGL PEYESVR  LLHRSPLPSLD AIQEILFEEK
Sbjct: 345 VLQPIWTQLDQAKISKDHLRLIKVLMGLPPEYESVRAALLHRSPLPSLDAAIQEILFEEK 404

Query: 61  HLGINLSKHSDVVLASTYSPPRASSTFCKNCKLTGHQFIDCPKIECRYCYKLGHIMDNCP 120
            LGINLSKHSDVVLASTYSPP ASSTFCKNCKLTGH+FIDCPKIECRYC+K GHI+DNCP
Sbjct: 405 RLGINLSKHSDVVLASTYSPPGASSTFCKNCKLTGHKFIDCPKIECRYCHKPGHILDNCP 464

Query: 121 IKPPRPRSYSTRAKNFTKPR 141
           IKPPRPRSYSTRAKNFTK R
Sbjct: 465 IKPPRPRSYSTRAKNFTKSR 484

The following BLAST results are available for this feature:

BLAST of MELO3C030889 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0032344.1	1.5e-68	90.71	uncharacterized protein E6C27_scaffold219G002060 [Cucumis melo var. makuwa] >TYK...	[more]
XP_008441928.1	1.5e-68	90.71	PREDICTED: uncharacterized protein LOC103485923 [Cucumis melo]	[more]
KAA0051863.1	9.6e-68	90.00	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK21374.1	9.6e-68	90.00	Zinc finger, CCHC-type [Cucumis melo var. makuwa]	[more]
KAA0063009.1	1.3e-67	90.71	Integrase, catalytic core [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C030889 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C030889 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SMD6	7.2e-69	90.71	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B566	7.2e-69	90.71	uncharacterized protein LOC103485923 OS=Cucumis melo OX=3656 GN=LOC103485923 PE=...	[more]
A0A5A7U7G4	4.7e-68	90.00	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3DCR3	4.7e-68	90.00	Zinc finger, CCHC-type OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold6...	[more]
A0A5A7VBM6	6.1e-68	90.71	Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo...	[more]

BLAST of MELO3C030889 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 105..121 e-value: 0.097 score: 17.5 coord: 87..103 e-value: 0.17 score: 16.0
None	No IPR available	GENE3D	4.10.60.10		coord: 68..127 e-value: 4.8E-8 score: 34.7
None	No IPR available	PANTHER	PTHR34222	FAMILY NOT NAMED	coord: 25..120
None	No IPR available	PANTHER	PTHR34222:SF36	SUBFAMILY NOT NAMED	coord: 25..120
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 82..122

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C030889.1	MELO3C030889.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding