MELO3C030848.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C030848.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionRetrotransposon protein
Locationchr04: 18500195 .. 18500440 (+)
RNA-Seq ExpressionMELO3C030848.jh1
SyntenyMELO3C030848.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGCGATGGAAATCGGATAATGGTACGTTTTGGCCAGGTTACCTCGCCCAGTTGGTACTCATGATGACGGAGAAACTACCTGGATGTCAGGTCCGCGCAACGACTGTAATTGATTGTAGAATTAAGACACTGAAGTGGACATTACAGACCATCGCCGAAATGCGGAGGCTAGCGTGCAGTGGCTTTGGGTGGAACGATGAAGAGAAATGTATAATTGCGGAGAAAGAATTATTTGATAATTGA

mRNA sequence

ATGGGGCGATGGAAATCGGATAATGGTACGTTTTGGCCAGGTTACCTCGCCCAGTTGGTACTCATGATGACGGAGAAACTACCTGGATGTCAGGTCCGCGCAACGACTGTAATTGATTGTAGAATTAAGACACTGAAGTGGACATTACAGACCATCGCCGAAATGCGGAGGCTAGCGTGCAGTGGCTTTGGGTGGAACGATGAAGAGAAATGTATAATTGCGGAGAAAGAATTATTTGATAATTGA

Coding sequence (CDS)

ATGGGGCGATGGAAATCGGATAATGGTACGTTTTGGCCAGGTTACCTCGCCCAGTTGGTACTCATGATGACGGAGAAACTACCTGGATGTCAGGTCCGCGCAACGACTGTAATTGATTGTAGAATTAAGACACTGAAGTGGACATTACAGACCATCGCCGAAATGCGGAGGCTAGCGTGCAGTGGCTTTGGGTGGAACGATGAAGAGAAATGTATAATTGCGGAGAAAGAATTATTTGATAATTGA

Protein sequence

MGRWKSDNGTFWPGYLAQLVLMMTEKLPGCQVRATTVIDCRIKTLKWTLQTIAEMRRLACSGFGWNDEEKCIIAEKELFDN
Homology
BLAST of MELO3C030848.jh1 vs. NCBI nr
Match: KAA0053616.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 150 bits (380), Expect = 3.82e-45
Identity = 71/81 (87.65%), Postives = 72/81 (88.89%), Query Frame = 0

Query: 1   MGRWKSDNGTFWPGYLAQLVLMMTEKLPGCQVRATTVIDCRIKTLKWTLQTIAEMRRLAC 60
           MG WKSDNGTF PGYLAQLV MM EKLPGCQVRATTVIDCRIKTLK T Q IAEMR  AC
Sbjct: 30  MGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPAC 89

Query: 61  SGFGWNDEEKCIIAEKELFDN 81
           SGFGWNDEEKCI+AEKELFDN
Sbjct: 90  SGFGWNDEEKCIVAEKELFDN 110

BLAST of MELO3C030848.jh1 vs. NCBI nr
Match: KAA0059075.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 150 bits (380), Expect = 3.82e-45
Identity = 71/81 (87.65%), Postives = 72/81 (88.89%), Query Frame = 0

Query: 1   MGRWKSDNGTFWPGYLAQLVLMMTEKLPGCQVRATTVIDCRIKTLKWTLQTIAEMRRLAC 60
           MG WKSDNGTF PGYLAQLV MM EKLPGCQVRATTVIDCRIKTLK T Q IAEMR  AC
Sbjct: 30  MGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPAC 89

Query: 61  SGFGWNDEEKCIIAEKELFDN 81
           SGFGWNDEEKCI+AEKELFDN
Sbjct: 90  SGFGWNDEEKCIVAEKELFDN 110

BLAST of MELO3C030848.jh1 vs. NCBI nr
Match: KAA0036099.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 150 bits (380), Expect = 3.82e-45
Identity = 71/81 (87.65%), Postives = 72/81 (88.89%), Query Frame = 0

Query: 1   MGRWKSDNGTFWPGYLAQLVLMMTEKLPGCQVRATTVIDCRIKTLKWTLQTIAEMRRLAC 60
           MG WKSDNGTF PGYLAQLV MM EKLPGCQVRATTVIDCRIKTLK T Q IAEMR  AC
Sbjct: 30  MGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPAC 89

Query: 61  SGFGWNDEEKCIIAEKELFDN 81
           SGFGWNDEEKCI+AEKELFDN
Sbjct: 90  SGFGWNDEEKCIVAEKELFDN 110

BLAST of MELO3C030848.jh1 vs. NCBI nr
Match: KAA0050400.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 152 bits (385), Expect = 1.18e-44
Identity = 72/81 (88.89%), Postives = 73/81 (90.12%), Query Frame = 0

Query: 1   MGRWKSDNGTFWPGYLAQLVLMMTEKLPGCQVRATTVIDCRIKTLKWTLQTIAEMRRLAC 60
           MG WKSDNGTF PGYLAQLV MM EKLPGCQVRATTVIDCRIKTLK T QTIAEMR  AC
Sbjct: 30  MGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQTIAEMRGPAC 89

Query: 61  SGFGWNDEEKCIIAEKELFDN 81
           SGFGWNDEEKCI+AEKELFDN
Sbjct: 90  SGFGWNDEEKCIVAEKELFDN 110

BLAST of MELO3C030848.jh1 vs. NCBI nr
Match: KAA0046637.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 149 bits (376), Expect = 1.56e-44
Identity = 70/81 (86.42%), Postives = 72/81 (88.89%), Query Frame = 0

Query: 1   MGRWKSDNGTFWPGYLAQLVLMMTEKLPGCQVRATTVIDCRIKTLKWTLQTIAEMRRLAC 60
           MG WKSDNGTF PGYLAQLV MM EKLPGCQVRATTVIDCRIKTLK T Q IAEMR  AC
Sbjct: 30  MGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPAC 89

Query: 61  SGFGWNDEEKCIIAEKELFDN 81
           SGFGWNDEEKCI+A+KELFDN
Sbjct: 90  SGFGWNDEEKCIVAKKELFDN 110

BLAST of MELO3C030848.jh1 vs. ExPASy TrEMBL
Match: A0A5A7UZR1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34445G00010 PE=4 SV=1)

HSP 1 Score: 150 bits (380), Expect = 1.85e-45
Identity = 71/81 (87.65%), Postives = 72/81 (88.89%), Query Frame = 0

Query: 1   MGRWKSDNGTFWPGYLAQLVLMMTEKLPGCQVRATTVIDCRIKTLKWTLQTIAEMRRLAC 60
           MG WKSDNGTF PGYLAQLV MM EKLPGCQVRATTVIDCRIKTLK T Q IAEMR  AC
Sbjct: 30  MGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPAC 89

Query: 61  SGFGWNDEEKCIIAEKELFDN 81
           SGFGWNDEEKCI+AEKELFDN
Sbjct: 90  SGFGWNDEEKCIVAEKELFDN 110

BLAST of MELO3C030848.jh1 vs. ExPASy TrEMBL
Match: A0A5A7UHB1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold5120G00010 PE=4 SV=1)

HSP 1 Score: 150 bits (380), Expect = 1.85e-45
Identity = 71/81 (87.65%), Postives = 72/81 (88.89%), Query Frame = 0

Query: 1   MGRWKSDNGTFWPGYLAQLVLMMTEKLPGCQVRATTVIDCRIKTLKWTLQTIAEMRRLAC 60
           MG WKSDNGTF PGYLAQLV MM EKLPGCQVRATTVIDCRIKTLK T Q IAEMR  AC
Sbjct: 30  MGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPAC 89

Query: 61  SGFGWNDEEKCIIAEKELFDN 81
           SGFGWNDEEKCI+AEKELFDN
Sbjct: 90  SGFGWNDEEKCIVAEKELFDN 110

BLAST of MELO3C030848.jh1 vs. ExPASy TrEMBL
Match: A0A5A7T3X9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22098G00010 PE=4 SV=1)

HSP 1 Score: 150 bits (380), Expect = 1.85e-45
Identity = 71/81 (87.65%), Postives = 72/81 (88.89%), Query Frame = 0

Query: 1   MGRWKSDNGTFWPGYLAQLVLMMTEKLPGCQVRATTVIDCRIKTLKWTLQTIAEMRRLAC 60
           MG WKSDNGTF PGYLAQLV MM EKLPGCQVRATTVIDCRIKTLK T Q IAEMR  AC
Sbjct: 30  MGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPAC 89

Query: 61  SGFGWNDEEKCIIAEKELFDN 81
           SGFGWNDEEKCI+AEKELFDN
Sbjct: 90  SGFGWNDEEKCIVAEKELFDN 110

BLAST of MELO3C030848.jh1 vs. ExPASy TrEMBL
Match: A0A5A7U5A6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1166G00140 PE=4 SV=1)

HSP 1 Score: 152 bits (385), Expect = 5.72e-45
Identity = 72/81 (88.89%), Postives = 73/81 (90.12%), Query Frame = 0

Query: 1   MGRWKSDNGTFWPGYLAQLVLMMTEKLPGCQVRATTVIDCRIKTLKWTLQTIAEMRRLAC 60
           MG WKSDNGTF PGYLAQLV MM EKLPGCQVRATTVIDCRIKTLK T QTIAEMR  AC
Sbjct: 30  MGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQTIAEMRGPAC 89

Query: 61  SGFGWNDEEKCIIAEKELFDN 81
           SGFGWNDEEKCI+AEKELFDN
Sbjct: 90  SGFGWNDEEKCIVAEKELFDN 110

BLAST of MELO3C030848.jh1 vs. ExPASy TrEMBL
Match: A0A5A7TXH6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold23362G00010 PE=4 SV=1)

HSP 1 Score: 149 bits (376), Expect = 7.54e-45
Identity = 70/81 (86.42%), Postives = 72/81 (88.89%), Query Frame = 0

Query: 1   MGRWKSDNGTFWPGYLAQLVLMMTEKLPGCQVRATTVIDCRIKTLKWTLQTIAEMRRLAC 60
           MG WKSDNGTF PGYLAQLV MM EKLPGCQVRATTVIDCRIKTLK T Q IAEMR  AC
Sbjct: 30  MGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPAC 89

Query: 61  SGFGWNDEEKCIIAEKELFDN 81
           SGFGWNDEEKCI+A+KELFDN
Sbjct: 90  SGFGWNDEEKCIVAKKELFDN 110

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0053616.13.82e-4587.65retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0059075.13.82e-4587.65retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0036099.13.82e-4587.65retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0050400.11.18e-4488.89retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0046637.11.56e-4486.42retrotransposon protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7UZR11.85e-4587.65Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7UHB11.85e-4587.65Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7T3X91.85e-4587.65Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7U5A65.72e-4588.89Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7TXH67.54e-4586.42Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR46250MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATEDcoord: 2..80
NoneNo IPR availablePANTHERPTHR46250:SF3MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEINcoord: 2..80

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C030848.jh1.t1MELO3C030848.jh1.t1mRNA