MELO3C030691.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C030691.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionRetrotransposon protein
Locationchr04: 8468471 .. 8469430 (-)
RNA-Seq ExpressionMELO3C030691.jh1
SyntenyMELO3C030691.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTCATGCAATTGCGGAGATGCGTGGCCAAACTTGCACTGGATTTGGGTGGAATGATGAACAAAAATGCATCGTCGCAGAGAAAGAAGTCTTCGATAATTGGGTCAAGGTGCGTTACTAGTCATTTGTGTGATTACTGTAGTATATTTCAAAAACTGGACTAACAATTTATTATTGCACTTATACAGAGTCATCTCGCGGCCAAGGGCCTCCTTAATAAGTCGTTTCCCTACTATGACGAACTGTCGTATGCTTTGGCAAAGATCGTGCAACGGATGGCCAGGCCGAGAGTTTTGCAGACGTTGGGTCAAACGATCTTGCTGGGTACGAGCCATTTGCCACTAACGCTACGCCGGATATAGACTTCCAGCCTATGTACAGTCAAGGATTGAACATGTCGCCTAATGAATTGATGGAAGCAGGAAATGCTCAGGTAAGTGAAGGTAGGTATGTTTCGAGCGGATCTAAGCGGAAACGTGGAGGACAGGCCGAAGACAGTGGGGACATACTTCGCACTGCAATTGAGTATGGAAATGAACAATTGAACCTCATTGCTGAATGACCTGTCCTACAACGTCAAGACGCAAGCCAAACACGTCAAGAGGTTGTCCGACAGTTGGAGGCCATCCTTGAGGTGACATTGATGGATAGATGTCACTTAATGCGTATACTTATGCGTAACGTCGATGACATGAAAGCTTTCCTTGAGGTTCCCGACAATATGAAGTACCCGTACTACAACATCATTCTTCAAGAAAATCGATGACTAGTTTGTTTGTTCTATTTGTATTGGTGGTTTTTTGTACTTGGACTATATGTTCATTAATTTACTTATTTTGTCTTATTATCTAACAAAATTCTCTTTCTCTTCAAGCTTGGTTTGTATTTTTCATTTCGCTTTCCAATGTAATGGTTTGATATTGTTGTATTATCGTATTAATGTACTGTTTTCGTTCAA

mRNA sequence

ATGTTTCATGCAATTGCGGAGATGCGTGGCCAAACTTGCACTGGATTTGGGTGGAATGATGAACAAAAATGCATCGTCGCAGAGAAAGAAGTCTTCGATAATTGGGTCAAGAGTCATCTCGCGGCCAAGGGCCTCCTTAATAAGTCGTTTCCCTACTATGACGAACTGTCGTATGCTTTGGCAAAGATCGTGCAACGGATGGCCAGGCCGAGAGTTTTGCAGACGTTGGGTCAAACGATCTTGCTGGGTACGAGCCATTTGCCACTAACGCTACGCCGGATATAGACTTCCAGCCTATGTACAGTCAAGGATTGAACATGTCGCCTAATGAATTGATGGAAGCAGGAAATGCTCAGGTAAGTGAAGGTAGGTATGTTTCGAGCGGATCTAAGCGGAAACGTGGAGGACAGGCCGAAGACAGTGGGGACATACTTCGCACTGCAATTGAGTATGGAAATGAACAATTGAACCTCATTGCTGAATGACCTGTCCTACAACGTCAAGACGCAAGCCAAACACGTCAAGAGGTTGTCCGACAGTTGGAGGCCATCCTTGAGGTGACATTGATGGATAGATGTCACTTAATGCGTATACTTATGCGTAACGTCGATGACATGAAAGCTTTCCTTGAGGTTCCCGACAATATGAAGTACCCGTACTACAACATCATTCTTCAAGAAAATCGATGACTAGTTTGTTTGTTCTATTTGTATTGGTGGTTTTTTGTACTTGGACTATATGTTCATTAATTTACTTATTTTGTCTTATTATCTAACAAAATTCTCTTTCTCTTCAAGCTTGGTTTGTATTTTTCATTTCGCTTTCCAATGTAATGGTTTGATATTGTTGTATTATCGTATTAATGTACTGTTTTCGTTCAA

Coding sequence (CDS)

ATGTTTCATGCAATTGCGGAGATGCGTGGCCAAACTTGCACTGGATTTGGGTGGAATGATGAACAAAAATGCATCGTCGCAGAGAAAGAAGTCTTCGATAATTGGGTCAAGAGTCATCTCGCGGCCAAGGGCCTCCTTAATAAGTCGTTTCCCTACTATGACGAACTGTCGTATGCTTTGGCAAAGATCGTGCAACGGATGGCCAGGCCGAGAGTTTTGCAGACGTTGGGTCAAACGATCTTGCTGGGTACGAGCCATTTGCCACTAACGCTACGCCGGATATAG

Protein sequence

MFHAIAEMRGQTCTGFGWNDEQKCIVAEKEVFDNWVKSHLAAKGLLNKSFPYYDELSYALAKIVQRMARPRVLQTLGQTILLGTSHLPLTLRRI
Homology
[Close]
BLAST of MELO3C030691.jh1 vs. NCBI nr
Match: TYK18628.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 154 bits (389), Expect = 5.07e-44
Identity = 76/94 (80.85%), Postives = 78/94 (82.98%), Query Frame = 0 

Query: 1   MFHAIAEMRGQTCTGFGWNDEQKCIVAEKEVFDNWVKSHLAAKGLLNKSFPYYDELSYAL 60
           MFHAI  MRG TC+GFGWNDEQKCIVAEKEV DNWVKSH AAKGLLNKSF +YDELSY  
Sbjct: 76  MFHAIVGMRGPTCSGFGWNDEQKCIVAEKEVLDNWVKSHTAAKGLLNKSFSHYDELSYVF 135

Query: 61  AKIVQRMARPRVLQTLGQTILLGTSHLPLTLRRI 94
            K      RPRVLQTLGQTILLGTSHL LTLRRI
Sbjct: 136 GKDRATGGRPRVLQTLGQTILLGTSHLSLTLRRI 169

[Close]
BLAST of MELO3C030691.jh1 vs. NCBI nr
Match: XP_031739738.1 (uncharacterized protein LOC116403265 [Cucumis sativus])

HSP 1 Score: 121 bits (303), Expect = 1.58e-32
Identity = 56/86 (65.12%), Postives = 66/86 (76.74%), Query Frame = 0 

Query: 1   MFHAIAEMRGQTCTGFGWNDEQKCIVAEKEVFDNWVKSHLAAKGLLNKSFPYYDELSYAL 60
           ++ AIAEMRG +C+GFGWND+ KCIVAEKE+FDNWV+SH AAKGLLNK FPYY EL+Y L
Sbjct: 77  LYQAIAEMRGPSCSGFGWNDDAKCIVAEKELFDNWVRSHPAAKGLLNKPFPYYGELAYVL 136

Query: 61  AKIVQRMARPRVLQTLGQTILLGTSH 86
            KIVQ  +  R L  L  T LLG  +
Sbjct: 137 GKIVQGASMQRPLSMLDPTFLLGLKN 162

[Close]
BLAST of MELO3C030691.jh1 vs. NCBI nr
Match: KAA0040938.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 122 bits (305), Expect = 2.70e-31
Identity = 61/84 (72.62%), Postives = 67/84 (79.76%), Query Frame = 0 

Query: 1   MFHAIAEMRGQTCTGFGWNDEQKCIVAEKEVFDNWVKSHLAAKGLLNKSFPYYDELSYAL 60
           MFHA+ EMRG TC+GFGWNDEQK IVAEKEVFD+ VKSH AAKGLLNKSF +YDELSY  
Sbjct: 151 MFHALTEMRGPTCSGFGWNDEQKYIVAEKEVFDDLVKSHPAAKGLLNKSFLHYDELSYMF 210

Query: 61  AKIVQRMARPRVLQTLGQTILLGT 84
            K      R R+L+ LGQTILLGT
Sbjct: 211 EKDRATAGRSRLLRMLGQTILLGT 234

[Close]
BLAST of MELO3C030691.jh1 vs. NCBI nr
Match: TYK20320.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 122 bits (305), Expect = 3.22e-31
Identity = 61/84 (72.62%), Postives = 67/84 (79.76%), Query Frame = 0 

Query: 1   MFHAIAEMRGQTCTGFGWNDEQKCIVAEKEVFDNWVKSHLAAKGLLNKSFPYYDELSYAL 60
           MFHA+ EMRG TC+GFGWNDEQK IVAEKEVFD+ VKSH AAKGLLNKSF +YDELSY  
Sbjct: 196 MFHALTEMRGPTCSGFGWNDEQKYIVAEKEVFDDLVKSHPAAKGLLNKSFLHYDELSYMF 255

Query: 61  AKIVQRMARPRVLQTLGQTILLGT 84
            K      R R+L+ LGQTILLGT
Sbjct: 256 EKDRATAGRSRLLRMLGQTILLGT 279

[Close]
BLAST of MELO3C030691.jh1 vs. NCBI nr
Match: KAA0047069.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK05088.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 117 bits (292), Expect = 4.93e-31
Identity = 52/62 (83.87%), Postives = 55/62 (88.71%), Query Frame = 0 

Query: 1   MFHAIAEMRGQTCTGFGWNDEQKCIVAEKEVFDNWVKSHLAAKGLLNKSFPYYDELSYAL 60
           MFHAIAEM G TC+G GWNDEQKCI+AEKEVFDNWVKSHLAAKGLLNK FP+YDELSY  
Sbjct: 47  MFHAIAEMLGPTCSGLGWNDEQKCIIAEKEVFDNWVKSHLAAKGLLNKLFPHYDELSYVF 106

Query: 61  AK 62
            K
Sbjct: 107 DK 108

[Close]
BLAST of MELO3C030691.jh1 vs. ExPASy TrEMBL
Match: A0A5D3D513 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G001660 PE=4 SV=1)

HSP 1 Score: 154 bits (389), Expect = 2.46e-44
Identity = 76/94 (80.85%), Postives = 78/94 (82.98%), Query Frame = 0 

Query: 1   MFHAIAEMRGQTCTGFGWNDEQKCIVAEKEVFDNWVKSHLAAKGLLNKSFPYYDELSYAL 60
           MFHAI  MRG TC+GFGWNDEQKCIVAEKEV DNWVKSH AAKGLLNKSF +YDELSY  
Sbjct: 76  MFHAIVGMRGPTCSGFGWNDEQKCIVAEKEVLDNWVKSHTAAKGLLNKSFSHYDELSYVF 135

Query: 61  AKIVQRMARPRVLQTLGQTILLGTSHLPLTLRRI 94
            K      RPRVLQTLGQTILLGTSHL LTLRRI
Sbjct: 136 GKDRATGGRPRVLQTLGQTILLGTSHLSLTLRRI 169

[Close]
BLAST of MELO3C030691.jh1 vs. ExPASy TrEMBL
Match: A0A5A7TDA2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold125G001320 PE=4 SV=1)

HSP 1 Score: 122 bits (305), Expect = 1.31e-31
Identity = 61/84 (72.62%), Postives = 67/84 (79.76%), Query Frame = 0 

Query: 1   MFHAIAEMRGQTCTGFGWNDEQKCIVAEKEVFDNWVKSHLAAKGLLNKSFPYYDELSYAL 60
           MFHA+ EMRG TC+GFGWNDEQK IVAEKEVFD+ VKSH AAKGLLNKSF +YDELSY  
Sbjct: 151 MFHALTEMRGPTCSGFGWNDEQKYIVAEKEVFDDLVKSHPAAKGLLNKSFLHYDELSYMF 210

Query: 61  AKIVQRMARPRVLQTLGQTILLGT 84
            K      R R+L+ LGQTILLGT
Sbjct: 211 EKDRATAGRSRLLRMLGQTILLGT 234

[Close]
BLAST of MELO3C030691.jh1 vs. ExPASy TrEMBL
Match: A0A5D3DA20 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold708G00510 PE=4 SV=1)

HSP 1 Score: 122 bits (305), Expect = 1.56e-31
Identity = 61/84 (72.62%), Postives = 67/84 (79.76%), Query Frame = 0 

Query: 1   MFHAIAEMRGQTCTGFGWNDEQKCIVAEKEVFDNWVKSHLAAKGLLNKSFPYYDELSYAL 60
           MFHA+ EMRG TC+GFGWNDEQK IVAEKEVFD+ VKSH AAKGLLNKSF +YDELSY  
Sbjct: 196 MFHALTEMRGPTCSGFGWNDEQKYIVAEKEVFDDLVKSHPAAKGLLNKSFLHYDELSYMF 255

Query: 61  AKIVQRMARPRVLQTLGQTILLGT 84
            K      R R+L+ LGQTILLGT
Sbjct: 256 EKDRATAGRSRLLRMLGQTILLGT 279

[Close]
BLAST of MELO3C030691.jh1 vs. ExPASy TrEMBL
Match: A0A5A7U0R2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1317G00640 PE=4 SV=1)

HSP 1 Score: 117 bits (292), Expect = 2.39e-31
Identity = 52/62 (83.87%), Postives = 55/62 (88.71%), Query Frame = 0 

Query: 1   MFHAIAEMRGQTCTGFGWNDEQKCIVAEKEVFDNWVKSHLAAKGLLNKSFPYYDELSYAL 60
           MFHAIAEM G TC+G GWNDEQKCI+AEKEVFDNWVKSHLAAKGLLNK FP+YDELSY  
Sbjct: 47  MFHAIAEMLGPTCSGLGWNDEQKCIIAEKEVFDNWVKSHLAAKGLLNKLFPHYDELSYVF 106

Query: 61  AK 62
            K
Sbjct: 107 DK 108

[Close]
BLAST of MELO3C030691.jh1 vs. ExPASy TrEMBL
Match: A0A5D3C1J4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G001630 PE=4 SV=1)

HSP 1 Score: 119 bits (298), Expect = 4.16e-31
Identity = 55/77 (71.43%), Postives = 60/77 (77.92%), Query Frame = 0 

Query: 1   MFHAIAEMRGQTCTGFGWNDEQKCIVAEKEVFDNWVKSHLAAKGLLNKSFPYYDELSYAL 60
           MFHAIAEMRG TC+GFGWNDEQKCIV EKEVFD+WVKSH  AKGLLNKSFP+YDELSY  
Sbjct: 76  MFHAIAEMRGPTCSGFGWNDEQKCIVVEKEVFDDWVKSHPTAKGLLNKSFPHYDELSYMF 135

Query: 61  AKIVQRMARPRVLQTLG 77
            K      RP+    +G
Sbjct: 136 GKDRAMGGRPKSFTDVG 152

[Close]
BLAST of MELO3C030691.jh1 vs. TAIR 10
Match: AT4G02210.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2); Has 791 Blast hits to 465 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 17; Plants - 748; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). )

HSP 1 Score: 42.0 bits (97), Expect = 3.2e-04
Identity = 13/42 (30.95%), Postives = 28/42 (66.67%), Query Frame = 0 

Query: 15  GFGWNDEQKCIVAEKEVFDNWVKSHLAAKGLLNKSFPYYDEL 57
           GF W++E++ + A+  V+ +++K+H  A+  + +  PYY +L
Sbjct: 259 GFAWDNERQMVTADNNVWQDYIKAHRDARQFMTRPIPYYKDL 300

[Close]
BLAST of MELO3C030691.jh1 vs. TAIR 10
Match: AT4G02210.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2). )

HSP 1 Score: 42.0 bits (97), Expect = 3.2e-04
Identity = 13/42 (30.95%), Postives = 28/42 (66.67%), Query Frame = 0 

Query: 15  GFGWNDEQKCIVAEKEVFDNWVKSHLAAKGLLNKSFPYYDEL 57
           GF W++E++ + A+  V+ +++K+H  A+  + +  PYY +L
Sbjct: 259 GFAWDNERQMVTADNNVWQDYIKAHRDARQFMTRPIPYYKDL 300

The following BLAST results are available for this feature:
BLAST of MELO3C030691.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK18628.15.07e-4480.85retrotransposon protein [Cucumis melo var. makuwa][more]
XP_031739738.11.58e-3265.12uncharacterized protein LOC116403265 [Cucumis sativus][more]
KAA0040938.12.70e-3172.62retrotransposon protein [Cucumis melo var. makuwa][more]
TYK20320.13.22e-3172.62retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0047069.14.93e-3183.87retrotransposon protein [Cucumis melo var. makuwa] >TYK05088.1 retrotransposon p... [more]
BLAST of MELO3C030691.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C030691.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3D5132.46e-4480.85Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TDA21.31e-3172.62Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3DA201.56e-3172.62Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7U0R22.39e-3183.87Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3C1J44.16e-3171.43Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of MELO3C030691.jh1 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G02210.13.2e-0430.95unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT4G02210.23.2e-0430.95unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR46250MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATEDcoord: 2..62
NoneNo IPR availablePANTHERPTHR46250:SF3MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEINcoord: 2..62

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C030691.jh1.t1MELO3C030691.jh1.t1mRNA