MELO3C030677 (gene) Melon (DHL92) v4

Overview


Name	MELO3C030677
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Pectin lyase-like superfamily protein
Location	chr04: 25272608 .. 25273639 (+)
RNA-Seq Expression	MELO3C030677
Synteny	MELO3C030677

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAATTTGAAGTTCAATTTCATCACGAATTCAATAGTGAAGGACATAACGTCATTGGATAGCAAGAATTATCATATTAATCTTTTGGGTTGCAAGAATCTTACCTTTGACCACGTGACAATTACTGCTATGGGGAATAGTCCCAACATTGATGGAATTCACAGGGGTAGTTCAGAACAGATTAACATTCTCAATACCAATATCGCAATTGGAGATGATTGTATATCCATGGGAGATACCAACAAACAAATAGTTATTAATGATGTTACTTGCGGACTAGGATATGGAATTAGCATACGAAGTTTGGGAAAATATAGCAAGGGAAAAAGAAGTGGTAGGAGTGATGGTGAAAAAATGTAAATTGACCGGTACTACAAACAGTGTTAGGATCAAAACATGGCCAGATTCTACCGTCGCATTCCCAGCCTCTAACATGCATTTTGAAGATATAGAAATGGTTAATGTTAGCAATACTGTCATCATAAACCAAGAATATCGTCCATGGAATCAATGCAATCGAAAGGTATGTACTAAAGCTAGGCCTCATTTTTAAACTTATTAATTAACTCAAATGACATTAATTTTTAACAGTGCAACAATAACATTATTCGAGTTATGTATTTTTATTGTGTTTTCTTTGTTGTTTAGGTTCCATAAAAAATTAAGATCAGCAACGTAAGCTTAAAGAATGTCAGCGGCACATCTGTGACTCCAGTAGCAATCAAAATTGTTTGCAGTCAAAGTAATCCATGTGAGAGTGGAAGTTGCTTTGACCTCACTTATAGTGGAAGTGGAGGTTCAATTAAGTCTCAGTGTGCAAATGTGAAATCTGTCATTTCAAGAAAACAAAATCCTCCAATATGTGGTGAACCTGCACCAATTGATGCTCCATCAACCAATTGAAGTTTTGTCAATGTGACAAATGTTTCAAACCATTTGAACTATCCTTTAATTTTAATAGCATATTTTTGTTTTACCCTGAAAAAATTCGTTGGACAAATTTGGTTACATACATTTTATGATTATAGGCATGC

mRNA sequence

GAATTTGAAGTTCAATTTCATCACGAATTCAATAGTGAAGGACATAACGTCATTGGATAGCAAGAATTATCATATTAATCTTTTGGGTTGCAAGAATCTTACCTTTGACCACGTGACAATTACTGCTATGGGGAATAGTCCCAACATTGATGGAATTCACAGGGGTAGTTCAGAACAGATTAACATTCTCAATACCAATATCGCAATTGGAGATGATTGTATATCCATGGGAGATACCAACAAACAAATAGTTATTAATGATGTTACTTGCGGACTAGGATATGGAATTAGCATACGAAGTTTGGGAAAATATAGCAAGGGAAAAAGAAGTGGTAGGAGTGATGGTGAAAAAATGTAAATTGACCGGTACTACAAACAGTGTTAGGATCAAAACATGGCCAGATTCTACCGTCGCATTCCCAGCCTCTAACATGCATTTTGAAGATATAGAAATGGTTAATGTTAGCAATACTGTCATCATAAACCAAGAATATCGTCCATGGAATCAATGCAATCGAAAGGTTCCATAAAAAATTAAGATCAGCAACGTAAGCTTAAAGAATGTCAGCGGCACATCTGTGACTCCAGTAGCAATCAAAATTGTTTGCAGTCAAAGTAATCCATGTGAGAGTGGAAGTTGCTTTGACCTCACTTATAGTGGAAGTGGAGGTTCAATTAAGTCTCAGTGTGCAAATGTGAAATCTGTCATTTCAAGAAAACAAAATCCTCCAATATGTGGTGAACCTGCACCAATTGATGCTCCATCAACCAATTGAAGTTTTGTCAATGTGACAAATGTTTCAAACCATTTGAACTATCCTTTAATTTTAATAGCATATTTTTGTTTTACCCTGAAAAAATTCGTTGGACAAATTTGGTTACATACATTTTATGATTATAGGCATGC

Coding sequence (CDS)

AATTTGAAGTTCAATTTCATCACGAATTCAATAGTGAAGGACATAACGTCATTGGATAGCAAGAATTATCATATTAATCTTTTGGGTTGCAAGAATCTTACCTTTGACCACGTGACAATTACTGCTATGGGGAATAGTCCCAACATTGATGGAATTCACAGGGGTAGTTCAGAACAGATTAACATTCTCAATACCAATATCGCAATTGGAGATGATTGTATATCCATGGGAGATACCAACAAACAAATAGTTATTAATGATGTTACTTGCGGACTAGGATATGGAATTAGCATACGAAGTTTGGGAAAATATAGCAAGGGAAAAAGAAGTGGTAGGAGTGATGGTGAAAAAATGTAA

Protein sequence

NLKFNFITNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHRGSSEQINILNTNIAIGDDCISMGDTNKQIVINDVTCGLGYGISIRSLGKYSKGKRSGRSDGEKM

Homology

[Close]

BLAST of MELO3C030677 vs. NCBI nr
Match: KAA0045594.1 (exopolygalacturonase-like [Cucumis melo var. makuwa])

HSP 1 Score: 191.0 bits (484), Expect = 5.7e-45
Identity = 94/108 (87.04%), Postives = 99/108 (91.67%), Query Frame = 0


Query: 1   NLKFNFITNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHRGSSEQI 60
           NLK NF+TNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITA GNSPN DGIH  SSEQI
Sbjct: 146 NLKLNFVTNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAPGNSPNTDGIHVSSSEQI 205

Query: 61  NILNTNIAIGDDCISMGDTNKQIVINDVTCGLGYGISIRSLGKYSKGK 109
           NILNTNIA GDDCIS+GDTNKQ+VI+DVTCG G+GISI SLGKYSK K
Sbjct: 206 NILNTNIATGDDCISVGDTNKQVVISDVTCGPGHGISIGSLGKYSKEK 253

[Close]

BLAST of MELO3C030677 vs. NCBI nr
Match: XP_016903689.1 (PREDICTED: exopolygalacturonase-like, partial [Cucumis melo])

HSP 1 Score: 191.0 bits (484), Expect = 5.7e-45
Identity = 94/108 (87.04%), Postives = 99/108 (91.67%), Query Frame = 0


Query: 1   NLKFNFITNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHRGSSEQI 60
           NLK NF+TNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITA GNSPN DGIH  SSEQI
Sbjct: 101 NLKLNFVTNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAPGNSPNTDGIHVSSSEQI 160

Query: 61  NILNTNIAIGDDCISMGDTNKQIVINDVTCGLGYGISIRSLGKYSKGK 109
           NILNTNIA GDDCIS+GDTNKQ+VI+DVTCG G+GISI SLGKYSK K
Sbjct: 161 NILNTNIATGDDCISVGDTNKQVVISDVTCGPGHGISIGSLGKYSKEK 208

[Close]

BLAST of MELO3C030677 vs. NCBI nr
Match: KAA0045610.1 (exopolygalacturonase-like [Cucumis melo var. makuwa] >TYK02646.1 exopolygalacturonase-like [Cucumis melo var. makuwa])

HSP 1 Score: 191.0 bits (484), Expect = 5.7e-45
Identity = 94/108 (87.04%), Postives = 99/108 (91.67%), Query Frame = 0


Query: 1   NLKFNFITNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHRGSSEQI 60
           NLK NF+TNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITA GNSPN DGIH  SSEQI
Sbjct: 146 NLKLNFVTNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAPGNSPNTDGIHVSSSEQI 205

Query: 61  NILNTNIAIGDDCISMGDTNKQIVINDVTCGLGYGISIRSLGKYSKGK 109
           NILNTNIA GDDCIS+GDTNKQ+VI+DVTCG G+GISI SLGKYSK K
Sbjct: 206 NILNTNIATGDDCISVGDTNKQVVISDVTCGPGHGISIGSLGKYSKEK 253

[Close]

BLAST of MELO3C030677 vs. NCBI nr
Match: KAA0045593.1 (exopolygalacturonase-like [Cucumis melo var. makuwa] >TYK28803.1 exopolygalacturonase-like [Cucumis melo var. makuwa])

HSP 1 Score: 191.0 bits (484), Expect = 5.7e-45
Identity = 94/108 (87.04%), Postives = 99/108 (91.67%), Query Frame = 0


Query: 1   NLKFNFITNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHRGSSEQI 60
           NLK NF+TNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITA GNSPN DGIH  SSEQI
Sbjct: 146 NLKLNFVTNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAPGNSPNTDGIHVSSSEQI 205

Query: 61  NILNTNIAIGDDCISMGDTNKQIVINDVTCGLGYGISIRSLGKYSKGK 109
           NILNTNIA GDDCIS+GDTNKQ+VI+DVTCG G+GISI SLGKYSK K
Sbjct: 206 NILNTNIATGDDCISVGDTNKQVVISDVTCGPGHGISIGSLGKYSKEK 253

[Close]

BLAST of MELO3C030677 vs. NCBI nr
Match: XP_008466933.1 (PREDICTED: polygalacturonase-like, partial [Cucumis melo])

HSP 1 Score: 191.0 bits (484), Expect = 5.7e-45
Identity = 94/108 (87.04%), Postives = 99/108 (91.67%), Query Frame = 0


Query: 1   NLKFNFITNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHRGSSEQI 60
           NLK NF+TNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITA GNSPN DGIH  SSEQI
Sbjct: 41  NLKLNFVTNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAPGNSPNTDGIHVSSSEQI 100

Query: 61  NILNTNIAIGDDCISMGDTNKQIVINDVTCGLGYGISIRSLGKYSKGK 109
           NILNTNIA GDDCIS+GDTNKQ+VI+DVTCG G+GISI SLGKYSK K
Sbjct: 101 NILNTNIATGDDCISVGDTNKQVVISDVTCGPGHGISIGSLGKYSKEK 148

[Close]

BLAST of MELO3C030677 vs. ExPASy Swiss-Prot
Match: Q40312 (Polygalacturonase OS=Medicago sativa OX=3879 PE=2 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 2.6e-32
Identity = 62/105 (59.05%), Postives = 80/105 (76.19%), Query Frame = 0


Query: 1   NLKFNFITNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHRGSSEQI 60
           N  FNF+ NSIV+ +TS DSKN+H+ + GCKN+TFD  TITA G+SPN DGIH G S  +
Sbjct: 149 NFGFNFVNNSIVRGVTSKDSKNFHVMVFGCKNITFDGFTITAPGDSPNTDGIHMGKSTDV 208

Query: 61  NILNTNIAIGDDCISMGDTNKQIVINDVTCGLGYGISIRSLGKYS 106
            ILNTNI  GDDC+S+GD +KQI +  V CG G+G+S+ SLGK++
Sbjct: 209 KILNTNIGTGDDCVSIGDGSKQITVQGVNCGPGHGLSVGSLGKFT 253

[Close]

BLAST of MELO3C030677 vs. ExPASy Swiss-Prot
Match: P24548 (Exopolygalacturonase (Fragment) OS=Oenothera organensis OX=3945 PE=2 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 7.0e-30
Identity = 59/104 (56.73%), Postives = 81/104 (77.88%), Query Frame = 0


Query: 1   NLKFNFITNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHRGSSEQI 60
           NL+   +TNSI++D+T+LDSKN+H+N++GCKNLTF+   I+A   S N DGIH G S+ +
Sbjct: 109 NLRLYAVTNSILRDVTTLDSKNFHVNVIGCKNLTFERFKISAAETSINTDGIHIGRSDGV 168

Query: 61  NILNTNIAIGDDCISMGDTNKQIVINDVTCGLGYGISIRSLGKY 105
           NI+NT I  GDDCIS+GD +K I I ++TCG G+GIS+ SLG+Y
Sbjct: 169 NIINTEIKTGDDCISLGDGSKNINITNITCGPGHGISVGSLGRY 212

[Close]

BLAST of MELO3C030677 vs. ExPASy Swiss-Prot
Match: Q39766 (Polygalacturonase OS=Gossypium barbadense OX=3634 GN=G9 PE=2 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 4.5e-29
Identity = 57/104 (54.81%), Postives = 80/104 (76.92%), Query Frame = 0


Query: 1   NLKFNFITNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHRGSSEQI 60
           N++F+F+TN++++DITS DSK +HIN+  CKN+T + + I A   SPN DGIH G SE +
Sbjct: 151 NIRFDFVTNALIQDITSKDSKLFHINVFACKNITLERLKIEAPDESPNTDGIHMGKSEGV 210

Query: 61  NILNTNIAIGDDCISMGDTNKQIVINDVTCGLGYGISIRSLGKY 105
           NI+ ++I  GDDCIS+GD  K +VI ++TCG G+GISI SLGK+
Sbjct: 211 NIIASDIKTGDDCISIGDGTKNMVIKEITCGPGHGISIGSLGKF 254

[Close]

BLAST of MELO3C030677 vs. ExPASy Swiss-Prot
Match: Q39786 (Polygalacturonase OS=Gossypium hirsutum OX=3635 GN=G9 PE=2 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 5.9e-29
Identity = 57/104 (54.81%), Postives = 80/104 (76.92%), Query Frame = 0


Query: 1   NLKFNFITNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHRGSSEQI 60
           N++F+F+TN++++DITS DSK +HIN+  CKN+T + + I A   SPN DGIH G SE +
Sbjct: 151 NIRFDFLTNALIQDITSKDSKLFHINVFACKNITLERLKIEAPDESPNTDGIHMGKSEGV 210

Query: 61  NILNTNIAIGDDCISMGDTNKQIVINDVTCGLGYGISIRSLGKY 105
           NI+ ++I  GDDCIS+GD  K +VI ++TCG G+GISI SLGK+
Sbjct: 211 NIIASDIKTGDDCISIGDGTKNMVIKEITCGPGHGISIGSLGKF 254

[Close]

BLAST of MELO3C030677 vs. ExPASy Swiss-Prot
Match: Q6H9K0 (Exopolygalacturonase (Fragment) OS=Platanus acerifolia OX=140101 GN=plaa2 PE=1 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 2.9e-28
Identity = 59/108 (54.63%), Postives = 82/108 (75.93%), Query Frame = 0


Query: 1   NLKFNFITNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHRGSSEQI 60
           NL+F+F+ +++V+DITSL+SK +HIN+L C+++TF HVT+TA G S N DGIH G S+ +
Sbjct: 130 NLRFDFLKHAMVRDITSLNSKMFHINVLECEDITFQHVTVTAPGTSINTDGIHVGISKGV 189

Query: 61  NILNTNIAIGDDCISMGDTNKQIVINDVTCGLGYGISIRSLGKYSKGK 109
            I NT IA GDDCIS+G  ++ + I  V CG G+GISI SLG+Y+  K
Sbjct: 190 TITNTKIATGDDCISIGPGSQNVTITQVNCGPGHGISIGSLGRYNNEK 237

[Close]

BLAST of MELO3C030677 vs. ExPASy TrEMBL
Match: A0A5A7TRZ0 (Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold280G00600 PE=3 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 2.7e-45
Identity = 94/108 (87.04%), Postives = 99/108 (91.67%), Query Frame = 0


Query: 1   NLKFNFITNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHRGSSEQI 60
           NLK NF+TNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITA GNSPN DGIH  SSEQI
Sbjct: 146 NLKLNFVTNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAPGNSPNTDGIHVSSSEQI 205

Query: 61  NILNTNIAIGDDCISMGDTNKQIVINDVTCGLGYGISIRSLGKYSKGK 109
           NILNTNIA GDDCIS+GDTNKQ+VI+DVTCG G+GISI SLGKYSK K
Sbjct: 206 NILNTNIATGDDCISVGDTNKQVVISDVTCGPGHGISIGSLGKYSKEK 253

[Close]

BLAST of MELO3C030677 vs. ExPASy TrEMBL
Match: A0A5D3DYI3 (Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold303G00050 PE=3 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 2.7e-45
Identity = 94/108 (87.04%), Postives = 99/108 (91.67%), Query Frame = 0


Query: 1   NLKFNFITNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHRGSSEQI 60
           NLK NF+TNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITA GNSPN DGIH  SSEQI
Sbjct: 146 NLKLNFVTNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAPGNSPNTDGIHVSSSEQI 205

Query: 61  NILNTNIAIGDDCISMGDTNKQIVINDVTCGLGYGISIRSLGKYSKGK 109
           NILNTNIA GDDCIS+GDTNKQ+VI+DVTCG G+GISI SLGKYSK K
Sbjct: 206 NILNTNIATGDDCISVGDTNKQVVISDVTCGPGHGISIGSLGKYSKEK 253

[Close]

BLAST of MELO3C030677 vs. ExPASy TrEMBL
Match: A0A5D3BWP4 (Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold280G00550 PE=3 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 2.7e-45
Identity = 94/108 (87.04%), Postives = 99/108 (91.67%), Query Frame = 0


Query: 1   NLKFNFITNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHRGSSEQI 60
           NLK NF+TNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITA GNSPN DGIH  SSEQI
Sbjct: 146 NLKLNFVTNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAPGNSPNTDGIHVSSSEQI 205

Query: 61  NILNTNIAIGDDCISMGDTNKQIVINDVTCGLGYGISIRSLGKYSKGK 109
           NILNTNIA GDDCIS+GDTNKQ+VI+DVTCG G+GISI SLGKYSK K
Sbjct: 206 NILNTNIATGDDCISVGDTNKQVVISDVTCGPGHGISIGSLGKYSKEK 253

[Close]

BLAST of MELO3C030677 vs. ExPASy TrEMBL
Match: A0A5A7TR51 (Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G00990 PE=3 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 2.7e-45
Identity = 94/108 (87.04%), Postives = 99/108 (91.67%), Query Frame = 0


Query: 1   NLKFNFITNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHRGSSEQI 60
           NLK NF+TNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITA GNSPN DGIH  SSEQI
Sbjct: 146 NLKLNFVTNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAPGNSPNTDGIHVSSSEQI 205

Query: 61  NILNTNIAIGDDCISMGDTNKQIVINDVTCGLGYGISIRSLGKYSKGK 109
           NILNTNIA GDDCIS+GDTNKQ+VI+DVTCG G+GISI SLGKYSK K
Sbjct: 206 NILNTNIATGDDCISVGDTNKQVVISDVTCGPGHGISIGSLGKYSKEK 253

[Close]

BLAST of MELO3C030677 vs. ExPASy TrEMBL
Match: A0A1S4E643 (exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103504477 PE=3 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 2.7e-45
Identity = 94/108 (87.04%), Postives = 99/108 (91.67%), Query Frame = 0


Query: 1   NLKFNFITNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHRGSSEQI 60
           NLK NF+TNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITA GNSPN DGIH  SSEQI
Sbjct: 101 NLKLNFVTNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAPGNSPNTDGIHVSSSEQI 160

Query: 61  NILNTNIAIGDDCISMGDTNKQIVINDVTCGLGYGISIRSLGKYSKGK 109
           NILNTNIA GDDCIS+GDTNKQ+VI+DVTCG G+GISI SLGKYSK K
Sbjct: 161 NILNTNIATGDDCISVGDTNKQVVISDVTCGPGHGISIGSLGKYSKEK 208

[Close]

BLAST of MELO3C030677 vs. TAIR 10
Match: AT3G07840.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 127.5 bits (319), Expect = 7.2e-30
Identity = 56/104 (53.85%), Postives = 81/104 (77.88%), Query Frame = 0


Query: 1   NLKFNFITNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHRGSSEQI 60
           +++F+F+ N+ ++DI+S+D+KN+HIN+LG KN+TFD+V + A   SPN DGIH G SE +
Sbjct: 141 SIRFDFVENAEIRDISSIDAKNFHINVLGAKNMTFDNVKVIAPAESPNTDGIHLGRSEGV 200

Query: 61  NILNTNIAIGDDCISMGDTNKQIVINDVTCGLGYGISIRSLGKY 105
            ILN+ IA GDDCIS+GD  K + + +V CG G+GIS+ SLG+Y
Sbjct: 201 KILNSKIATGDDCISVGDGMKNLHVENVMCGPGHGISVGSLGRY 244

[Close]

BLAST of MELO3C030677 vs. TAIR 10
Match: AT3G07830.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 124.0 bits (310), Expect = 7.9e-29
Identity = 52/104 (50.00%), Postives = 82/104 (78.85%), Query Frame = 0


Query: 1   NLKFNFITNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHRGSSEQI 60
           +++F+F+TN+ ++DI+S+D+KN+HIN++G KN+TFD+V I A   SPN DGIH G S  +
Sbjct: 141 SIRFDFVTNAEIRDISSIDAKNFHINVIGAKNMTFDNVKIMAPAESPNTDGIHLGRSVGV 200

Query: 61  NILNTNIAIGDDCISMGDTNKQIVINDVTCGLGYGISIRSLGKY 105
           +I+N+ I+ GDDC+S+GD    +++ +V CG G+GIS+ SLG+Y
Sbjct: 201 SIINSRISTGDDCVSVGDGMVNLLVKNVVCGPGHGISVGSLGRY 244

[Close]

BLAST of MELO3C030677 vs. TAIR 10
Match: AT3G07820.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 122.9 bits (307), Expect = 1.8e-28
Identity = 55/104 (52.88%), Postives = 81/104 (77.88%), Query Frame = 0


Query: 1   NLKFNFITNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHRGSSEQI 60
           +++F+FI NS ++DI+S+D+KN+HIN+LG KN+T +++ I A  +SPN DGIH G S+ +
Sbjct: 140 SIRFDFILNSEIRDISSIDAKNFHINVLGAKNMTMNNIKIVAPEDSPNTDGIHLGRSDGV 199

Query: 61  NILNTNIAIGDDCISMGDTNKQIVINDVTCGLGYGISIRSLGKY 105
            ILN+ I+ GDDCIS+GD  K + +  VTCG G+GIS+ SLG+Y
Sbjct: 200 KILNSFISTGDDCISVGDGMKNLHVEKVTCGPGHGISVGSLGRY 243

[Close]

BLAST of MELO3C030677 vs. TAIR 10
Match: AT5G48140.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 122.1 bits (305), Expect = 3.0e-28
Identity = 55/105 (52.38%), Postives = 82/105 (78.10%), Query Frame = 0


Query: 1   NLKFNFITNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHRGSSEQI 60
           +++F+F+T++ ++ ITSLD+K++HIN++G KN+TF+ V I A   SPN DGIH G S+ I
Sbjct: 140 SIRFDFVTDAKIRGITSLDAKHFHINVIGAKNVTFEDVKIIAPAESPNTDGIHVGRSDGI 199

Query: 61  NILNTNIAIGDDCISMGDTNKQIVINDVTCGLGYGISIRSLGKYS 106
            I+N+ I+ GDDC+S+GD  K +++  VTCG G+GISI SLG+YS
Sbjct: 200 KIINSFISTGDDCVSVGDGMKNLLVERVTCGPGHGISIGSLGRYS 244

[Close]

BLAST of MELO3C030677 vs. TAIR 10
Match: AT3G07850.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 107.1 bits (266), Expect = 1.0e-23
Identity = 48/104 (46.15%), Postives = 70/104 (67.31%), Query Frame = 0


Query: 1   NLKFNFITNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHRGSSEQI 60
           N++F  +TNS +  ITS +SK +H+N+L CKN+T   + I A   S N DGIH G S  +
Sbjct: 191 NIRFTGLTNSKINSITSTNSKLFHMNILNCKNITLSDIGIDAPPESLNTDGIHIGRSNGV 250

Query: 61  NILNTNIAIGDDCISMGDTNKQIVINDVTCGLGYGISIRSLGKY 105
           N++   I  GDDC+S+GD  + +++ +V CG G+GISI SLG+Y
Sbjct: 251 NLIGAKIKTGDDCVSIGDGTENLIVENVECGPGHGISIGSLGRY 294

The following BLAST results are available for this feature:

BLAST of MELO3C030677 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0045594.1	5.7e-45	87.04	exopolygalacturonase-like [Cucumis melo var. makuwa]	[more]
XP_016903689.1	5.7e-45	87.04	PREDICTED: exopolygalacturonase-like, partial [Cucumis melo]	[more]
KAA0045610.1	5.7e-45	87.04	exopolygalacturonase-like [Cucumis melo var. makuwa] >TYK02646.1 exopolygalactur...	[more]
KAA0045593.1	5.7e-45	87.04	exopolygalacturonase-like [Cucumis melo var. makuwa] >TYK28803.1 exopolygalactur...	[more]
XP_008466933.1	5.7e-45	87.04	PREDICTED: polygalacturonase-like, partial [Cucumis melo]	[more]

BLAST of MELO3C030677 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q40312	2.6e-32	59.05	Polygalacturonase OS=Medicago sativa OX=3879 PE=2 SV=1	[more]
P24548	7.0e-30	56.73	Exopolygalacturonase (Fragment) OS=Oenothera organensis OX=3945 PE=2 SV=1	[more]
Q39766	4.5e-29	54.81	Polygalacturonase OS=Gossypium barbadense OX=3634 GN=G9 PE=2 SV=1	[more]
Q39786	5.9e-29	54.81	Polygalacturonase OS=Gossypium hirsutum OX=3635 GN=G9 PE=2 SV=1	[more]
Q6H9K0	2.9e-28	54.63	Exopolygalacturonase (Fragment) OS=Platanus acerifolia OX=140101 GN=plaa2 PE=1 S...	[more]

BLAST of MELO3C030677 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TRZ0	2.7e-45	87.04	Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A5D3DYI3	2.7e-45	87.04	Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A5D3BWP4	2.7e-45	87.04	Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A5A7TR51	2.7e-45	87.04	Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo...	[more]
A0A1S4E643	2.7e-45	87.04	exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103504477 PE=3 SV=1	[more]

BLAST of MELO3C030677 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G07840.1	7.2e-30	53.85	Pectin lyase-like superfamily protein	[more]
AT3G07830.1	7.9e-29	50.00	Pectin lyase-like superfamily protein	[more]
AT3G07820.1	1.8e-28	52.88	Pectin lyase-like superfamily protein	[more]
AT5G48140.1	3.0e-28	52.38	Pectin lyase-like superfamily protein	[more]
AT3G07850.1	1.0e-23	46.15	Pectin lyase-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012334	Pectin lyase fold	GENE3D	2.160.20.10		coord: 1..111 e-value: 5.3E-29 score: 103.4
IPR000743	Glycoside hydrolase, family 28	PFAM	PF00295	Glyco_hydro_28	coord: 2..106 e-value: 5.2E-29 score: 101.3
None	No IPR available	PANTHER	PTHR31375:SF248	POLYGALACTURONASE	coord: 1..106
None	No IPR available	PANTHER	PTHR31375	FAMILY NOT NAMED	coord: 1..106
IPR011050	Pectin lyase fold/virulence factor	SUPERFAMILY	51126	Pectin lyase-like	coord: 2..105

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C030677.1	MELO3C030677.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
molecular_function	GO:0004650	polygalacturonase activity