MELO3C030628 (gene) Melon (DHL92) v4

Overview


Name	MELO3C030628
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Protein TIC 214
Location	chr08: 25753689 .. 25753880 (-)
RNA-Seq Expression	MELO3C030628
Synteny	MELO3C030628

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGTAATCTTAGCATTCAATGTGTATTCCTGAATCATCTCATTTTTCAATTATTCAACCATTTCATTTTACCAAGTTCAATGTTAGTCAGATTAGTCAACATTTCTATGTTTCGATGCAACAACAAGTTGTTATTTGTAACAAGTAGTTTTGTTGGTTGGTTAATTGGTCACATTTTATTCATGAAATGG

mRNA sequence

ATGCGTAATCTTAGCATTCAATGTGTATTCCTGAATCATCTCATTTTTCAATTATTCAACCATTTCATTTTACCAAGTTCAATGTTAGTCAGATTAGTCAACATTTCTATGTTTCGATGCAACAACAAGTTGTTATTTGTAACAAGTAGTTTTGTTGGTTGGTTAATTGGTCACATTTTATTCATGAAATGG

Coding sequence (CDS)

ATGCGTAATCTTAGCATTCAATGTGTATTCCTGAATCATCTCATTTTTCAATTATTCAACCATTTCATTTTACCAAGTTCAATGTTAGTCAGATTAGTCAACATTTCTATGTTTCGATGCAACAACAAGTTGTTATTTGTAACAAGTAGTTTTGTTGGTTGGTTAATTGGTCACATTTTATTCATGAAATGG

Protein sequence

MRNLSIQCVFLNHLIFQLFNHFILPSSMLVRLVNISMFRCNNKLLFVTSSFVGWLIGHILFMKW

Homology

[Close]

BLAST of MELO3C030628 vs. NCBI nr
Match: ASY96828.1 (Ycf1 [Cucumis melo var. momordica] >ASY97002.1 Ycf1 [Cucumis melo var. cantalupo] >ASY97350.1 Ycf1 [Cucumis melo var. flexuosus] >ASY97089.1 Ycf1 [Cucumis melo var. cantalupo] >ASY97263.1 Ycf1 [Cucumis melo var. cantalupo])

HSP 1 Score: 129.4 bits (324), Expect = 1.1e-26
Identity = 63/64 (98.44%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 1   MRNLSIQCVFLNHLIFQLFNHFILPSSMLVRLVNISMFRCNNKLLFVTSSFVGWLIGHIL 60
           MRNLSIQCVFLNHLIFQLFNHFILPSSMLVRLVNISMFRCNNK+LFVTSSFVGWLIGHIL
Sbjct: 121 MRNLSIQCVFLNHLIFQLFNHFILPSSMLVRLVNISMFRCNNKMLFVTSSFVGWLIGHIL 180

Query: 61  FMKW 65
           FMKW
Sbjct: 181 FMKW 184

[Close]

BLAST of MELO3C030628 vs. NCBI nr
Match: ASY96481.1 (Ycf1 [Cucumis melo subsp. agrestis])

HSP 1 Score: 129.4 bits (324), Expect = 1.1e-26
Identity = 63/64 (98.44%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 1   MRNLSIQCVFLNHLIFQLFNHFILPSSMLVRLVNISMFRCNNKLLFVTSSFVGWLIGHIL 60
           MRNLSIQCVFLNHLIFQLFNHFILPSSMLVRLVNISMFRCNNK+LFVTSSFVGWLIGHIL
Sbjct: 121 MRNLSIQCVFLNHLIFQLFNHFILPSSMLVRLVNISMFRCNNKMLFVTSSFVGWLIGHIL 180

Query: 61  FMKW 65
           FMKW
Sbjct: 181 FMKW 184

[Close]

BLAST of MELO3C030628 vs. NCBI nr
Match: ASY96394.1 (Ycf1 [Cucumis melo subsp. agrestis])

HSP 1 Score: 129.4 bits (324), Expect = 1.1e-26
Identity = 63/64 (98.44%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 1   MRNLSIQCVFLNHLIFQLFNHFILPSSMLVRLVNISMFRCNNKLLFVTSSFVGWLIGHIL 60
           MRNLSIQCVFLNHLIFQLFNHFILPSSMLVRLVNISMFRCNNK+LFVTSSFVGWLIGHIL
Sbjct: 121 MRNLSIQCVFLNHLIFQLFNHFILPSSMLVRLVNISMFRCNNKMLFVTSSFVGWLIGHIL 180

Query: 61  FMKW 65
           FMKW
Sbjct: 181 FMKW 184

[Close]

BLAST of MELO3C030628 vs. NCBI nr
Match: ASY96829.1 (Ycf1 [Cucumis melo var. momordica] >ASY97003.1 Ycf1 [Cucumis melo var. cantalupo] >ASY97351.1 Ycf1 [Cucumis melo var. flexuosus] >ASY97090.1 Ycf1 [Cucumis melo var. cantalupo] >ASY97264.1 Ycf1 [Cucumis melo var. cantalupo])

HSP 1 Score: 129.4 bits (324), Expect = 1.1e-26
Identity = 63/64 (98.44%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 1   MRNLSIQCVFLNHLIFQLFNHFILPSSMLVRLVNISMFRCNNKLLFVTSSFVGWLIGHIL 60
           MRNLSIQCVFLNHLIFQLFNHFILPSSMLVRLVNISMFRCNNK+LFVTSSFVGWLIGHIL
Sbjct: 121 MRNLSIQCVFLNHLIFQLFNHFILPSSMLVRLVNISMFRCNNKMLFVTSSFVGWLIGHIL 180

Query: 61  FMKW 65
           FMKW
Sbjct: 181 FMKW 184

[Close]

BLAST of MELO3C030628 vs. NCBI nr
Match: ASY96568.1 (Ycf1 [Cucumis melo subsp. agrestis])

HSP 1 Score: 129.4 bits (324), Expect = 1.1e-26
Identity = 63/64 (98.44%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 1   MRNLSIQCVFLNHLIFQLFNHFILPSSMLVRLVNISMFRCNNKLLFVTSSFVGWLIGHIL 60
           MRNLSIQCVFLNHLIFQLFNHFILPSSMLVRLVNISMFRCNNK+LFVTSSFVGWLIGHIL
Sbjct: 121 MRNLSIQCVFLNHLIFQLFNHFILPSSMLVRLVNISMFRCNNKMLFVTSSFVGWLIGHIL 180

Query: 61  FMKW 65
           FMKW
Sbjct: 181 FMKW 184

[Close]

BLAST of MELO3C030628 vs. ExPASy Swiss-Prot
Match: Q09WW0 (Protein TIC 214 OS=Morus indica OX=248361 GN=TIC214 PE=3 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 4.6e-28
Identity = 61/64 (95.31%), Postives = 63/64 (98.44%), Query Frame = 0


Query: 1   MRNLSIQCVFLNHLIFQLFNHFILPSSMLVRLVNISMFRCNNKLLFVTSSFVGWLIGHIL 60
           MRNLSIQCVFLN+LIFQLFNHFILPSSMLVRLVNI MFRCNNK+LFVTSSFVGWLIGHIL
Sbjct: 124 MRNLSIQCVFLNNLIFQLFNHFILPSSMLVRLVNIYMFRCNNKMLFVTSSFVGWLIGHIL 183

Query: 61  FMKW 65
           FMKW
Sbjct: 184 FMKW 187

[Close]

BLAST of MELO3C030628 vs. ExPASy Swiss-Prot
Match: Q14FA0 (Protein TIC 214 OS=Populus alba OX=43335 GN=TIC214 PE=3 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 4.6e-28
Identity = 61/64 (95.31%), Postives = 63/64 (98.44%), Query Frame = 0


Query: 1   MRNLSIQCVFLNHLIFQLFNHFILPSSMLVRLVNISMFRCNNKLLFVTSSFVGWLIGHIL 60
           MRNLSIQCVFLN+LIFQLFNHFILPSSMLVRLVNI MFRCNNK+LFVTSSFVGWLIGHIL
Sbjct: 124 MRNLSIQCVFLNNLIFQLFNHFILPSSMLVRLVNIYMFRCNNKMLFVTSSFVGWLIGHIL 183

Query: 61  FMKW 65
           FMKW
Sbjct: 184 FMKW 187

[Close]

BLAST of MELO3C030628 vs. ExPASy Swiss-Prot
Match: A4GYX4 (Protein TIC 214 OS=Populus trichocarpa OX=3694 GN=TIC214 PE=3 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 4.6e-28
Identity = 61/64 (95.31%), Postives = 63/64 (98.44%), Query Frame = 0


Query: 1   MRNLSIQCVFLNHLIFQLFNHFILPSSMLVRLVNISMFRCNNKLLFVTSSFVGWLIGHIL 60
           MRNLSIQCVFLN+LIFQLFNHFILPSSMLVRLVNI MFRCNNK+LFVTSSFVGWLIGHIL
Sbjct: 124 MRNLSIQCVFLNNLIFQLFNHFILPSSMLVRLVNIYMFRCNNKMLFVTSSFVGWLIGHIL 183

Query: 61  FMKW 65
           FMKW
Sbjct: 184 FMKW 187

[Close]

BLAST of MELO3C030628 vs. ExPASy Swiss-Prot
Match: Q4VZL0 (Protein TIC 214 OS=Cucumis sativus OX=3659 GN=TIC214 PE=3 SV=2)

HSP 1 Score: 122.9 bits (307), Expect = 1.3e-27
Identity = 61/63 (96.83%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1   MRNLSIQCVFLNHLIFQLFNHFILPSSMLVRLVNISMFRCNNKLLFVTSSFVGWLIGHIL 60
           MRNLSIQCVFLN+LIFQLFNHFILPSSMLVRLVNISMFRCNNK+LFVTSSFVGWLIGHIL
Sbjct: 121 MRNLSIQCVFLNNLIFQLFNHFILPSSMLVRLVNISMFRCNNKMLFVTSSFVGWLIGHIL 180

Query: 61  FMK 64
           FMK
Sbjct: 181 FMK 183

[Close]

BLAST of MELO3C030628 vs. ExPASy Swiss-Prot
Match: Q0G9Q4 (Protein TIC 214 OS=Daucus carota OX=4039 GN=TIC214 PE=3 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 1.3e-27
Identity = 60/64 (93.75%), Postives = 62/64 (96.88%), Query Frame = 0


Query: 1   MRNLSIQCVFLNHLIFQLFNHFILPSSMLVRLVNISMFRCNNKLLFVTSSFVGWLIGHIL 60
           MRNLSIQCVFLN+LIFQLFNHFILPSSML RLVNI MFRCNNK+LFVTSSFVGWLIGHIL
Sbjct: 124 MRNLSIQCVFLNNLIFQLFNHFILPSSMLARLVNIYMFRCNNKMLFVTSSFVGWLIGHIL 183

Query: 61  FMKW 65
           FMKW
Sbjct: 184 FMKW 187

[Close]

BLAST of MELO3C030628 vs. ExPASy TrEMBL
Match: A0A1S4EU51 (Protein TIC 214 OS=Cucumis melo OX=3656 GN=ycf1 PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 5.3e-27
Identity = 63/64 (98.44%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 1   MRNLSIQCVFLNHLIFQLFNHFILPSSMLVRLVNISMFRCNNKLLFVTSSFVGWLIGHIL 60
           MRNLSIQCVFLNHLIFQLFNHFILPSSMLVRLVNISMFRCNNK+LFVTSSFVGWLIGHIL
Sbjct: 121 MRNLSIQCVFLNHLIFQLFNHFILPSSMLVRLVNISMFRCNNKMLFVTSSFVGWLIGHIL 180

Query: 61  FMKW 65
           FMKW
Sbjct: 181 FMKW 184

[Close]

BLAST of MELO3C030628 vs. ExPASy TrEMBL
Match: A0A1S4EU70 (Protein TIC 214 OS=Cucumis melo OX=3656 GN=ycf1 PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 5.3e-27
Identity = 63/64 (98.44%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 1   MRNLSIQCVFLNHLIFQLFNHFILPSSMLVRLVNISMFRCNNKLLFVTSSFVGWLIGHIL 60
           MRNLSIQCVFLNHLIFQLFNHFILPSSMLVRLVNISMFRCNNK+LFVTSSFVGWLIGHIL
Sbjct: 121 MRNLSIQCVFLNHLIFQLFNHFILPSSMLVRLVNISMFRCNNKMLFVTSSFVGWLIGHIL 180

Query: 61  FMKW 65
           FMKW
Sbjct: 181 FMKW 184

[Close]

BLAST of MELO3C030628 vs. ExPASy TrEMBL
Match: A0A249RZD8 (Protein TIC 214 OS=Cucumis melo var. cantalupensis OX=3658 GN=ycf1 PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 5.3e-27
Identity = 63/64 (98.44%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 1   MRNLSIQCVFLNHLIFQLFNHFILPSSMLVRLVNISMFRCNNKLLFVTSSFVGWLIGHIL 60
           MRNLSIQCVFLNHLIFQLFNHFILPSSMLVRLVNISMFRCNNK+LFVTSSFVGWLIGHIL
Sbjct: 121 MRNLSIQCVFLNHLIFQLFNHFILPSSMLVRLVNISMFRCNNKMLFVTSSFVGWLIGHIL 180

Query: 61  FMKW 65
           FMKW
Sbjct: 181 FMKW 184

[Close]

BLAST of MELO3C030628 vs. ExPASy TrEMBL
Match: A0A249RZN8 (Protein TIC 214 OS=Cucumis melo var. cantalupensis OX=3658 GN=ycf1 PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 5.3e-27
Identity = 63/64 (98.44%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 1   MRNLSIQCVFLNHLIFQLFNHFILPSSMLVRLVNISMFRCNNKLLFVTSSFVGWLIGHIL 60
           MRNLSIQCVFLNHLIFQLFNHFILPSSMLVRLVNISMFRCNNK+LFVTSSFVGWLIGHIL
Sbjct: 121 MRNLSIQCVFLNHLIFQLFNHFILPSSMLVRLVNISMFRCNNKMLFVTSSFVGWLIGHIL 180

Query: 61  FMKW 65
           FMKW
Sbjct: 181 FMKW 184

[Close]

BLAST of MELO3C030628 vs. ExPASy TrEMBL
Match: A0A286NG49 (Protein TIC 214 OS=Cucumis melo var. flexuosus OX=1120798 GN=ycf1 PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 5.3e-27
Identity = 63/64 (98.44%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 1   MRNLSIQCVFLNHLIFQLFNHFILPSSMLVRLVNISMFRCNNKLLFVTSSFVGWLIGHIL 60
           MRNLSIQCVFLNHLIFQLFNHFILPSSMLVRLVNISMFRCNNK+LFVTSSFVGWLIGHIL
Sbjct: 121 MRNLSIQCVFLNHLIFQLFNHFILPSSMLVRLVNISMFRCNNKMLFVTSSFVGWLIGHIL 180

Query: 61  FMKW 65
           FMKW
Sbjct: 181 FMKW 184

[Close]

BLAST of MELO3C030628 vs. TAIR 10
Match: ATCG01130.1 (Ycf1 protein )

HSP 1 Score: 120.9 bits (302), Expect = 3.6e-28
Identity = 59/64 (92.19%), Postives = 61/64 (95.31%), Query Frame = 0


Query: 1   MRNLSIQCVFLNHLIFQLFNHFILPSSMLVRLVNISMFRCNNKLLFVTSSFVGWLIGHIL 60
           MRNL IQCVFLN+LIFQLFNHFILPSSML RLVNI MFRCNNK+LFVTSSFVGWLIGHIL
Sbjct: 125 MRNLRIQCVFLNNLIFQLFNHFILPSSMLARLVNIYMFRCNNKMLFVTSSFVGWLIGHIL 184

Query: 61  FMKW 65
           FMKW
Sbjct: 185 FMKW 188

[Close]

BLAST of MELO3C030628 vs. TAIR 10
Match: ATCG01000.1 (Ycf1 protein )

HSP 1 Score: 120.9 bits (302), Expect = 3.6e-28
Identity = 59/64 (92.19%), Postives = 61/64 (95.31%), Query Frame = 0


Query: 1   MRNLSIQCVFLNHLIFQLFNHFILPSSMLVRLVNISMFRCNNKLLFVTSSFVGWLIGHIL 60
           MRNL IQCVFLN+LIFQLFNHFILPSSML RLVNI MFRCNNK+LFVTSSFVGWLIGHIL
Sbjct: 125 MRNLRIQCVFLNNLIFQLFNHFILPSSMLARLVNIYMFRCNNKMLFVTSSFVGWLIGHIL 184

Query: 61  FMKW 65
           FMKW
Sbjct: 185 FMKW 188

[Close]

BLAST of MELO3C030628 vs. TAIR 10
Match: AT2G07739.1 (Ycf1 protein )

HSP 1 Score: 86.7 bits (213), Expect = 7.6e-18
Identity = 46/64 (71.88%), Postives = 53/64 (82.81%), Query Frame = 0


Query: 1   MRNLSIQCVFLNHLIFQLFNHFILPSSMLVRLVNISMFRCNNKLLFVTSSFVGWLIGHIL 60
           MRNL IQCVF N+LIF+LFNH ILPSSML RLVNI MFRCNNK+LFVTSSFV  +   +L
Sbjct: 125 MRNLRIQCVFPNNLIFKLFNHLILPSSMLARLVNIYMFRCNNKMLFVTSSFV--VCVRML 184

Query: 61  FMKW 65
            ++W
Sbjct: 185 LVEW 186

[Close]

BLAST of MELO3C030628 vs. TAIR 10
Match: ATMG00370.1 (Ycf1 protein )

HSP 1 Score: 86.7 bits (213), Expect = 7.6e-18
Identity = 46/64 (71.88%), Postives = 53/64 (82.81%), Query Frame = 0


Query: 1   MRNLSIQCVFLNHLIFQLFNHFILPSSMLVRLVNISMFRCNNKLLFVTSSFVGWLIGHIL 60
           MRNL IQCVF N+LIF+LFNH ILPSSML RLVNI MFRCNNK+LFVTSSFV  +   +L
Sbjct: 125 MRNLRIQCVFPNNLIFKLFNHLILPSSMLARLVNIYMFRCNNKMLFVTSSFV--VCVRML 184

Query: 61  FMKW 65
            ++W
Sbjct: 185 LVEW 186

The following BLAST results are available for this feature:

BLAST of MELO3C030628 vs. NCBI nr


Match Name	E-value	Identity	Description
ASY96828.1	1.1e-26	98.44	Ycf1 [Cucumis melo var. momordica] >ASY97002.1 Ycf1 [Cucumis melo var. cantalupo...	[more]
ASY96481.1	1.1e-26	98.44	Ycf1 [Cucumis melo subsp. agrestis]	[more]
ASY96394.1	1.1e-26	98.44	Ycf1 [Cucumis melo subsp. agrestis]	[more]
ASY96829.1	1.1e-26	98.44	Ycf1 [Cucumis melo var. momordica] >ASY97003.1 Ycf1 [Cucumis melo var. cantalupo...	[more]
ASY96568.1	1.1e-26	98.44	Ycf1 [Cucumis melo subsp. agrestis]	[more]

BLAST of MELO3C030628 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q09WW0	4.6e-28	95.31	Protein TIC 214 OS=Morus indica OX=248361 GN=TIC214 PE=3 SV=1	[more]
Q14FA0	4.6e-28	95.31	Protein TIC 214 OS=Populus alba OX=43335 GN=TIC214 PE=3 SV=1	[more]
A4GYX4	4.6e-28	95.31	Protein TIC 214 OS=Populus trichocarpa OX=3694 GN=TIC214 PE=3 SV=1	[more]
Q4VZL0	1.3e-27	96.83	Protein TIC 214 OS=Cucumis sativus OX=3659 GN=TIC214 PE=3 SV=2	[more]
Q0G9Q4	1.3e-27	93.75	Protein TIC 214 OS=Daucus carota OX=4039 GN=TIC214 PE=3 SV=1	[more]

BLAST of MELO3C030628 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4EU51	5.3e-27	98.44	Protein TIC 214 OS=Cucumis melo OX=3656 GN=ycf1 PE=3 SV=1	[more]
A0A1S4EU70	5.3e-27	98.44	Protein TIC 214 OS=Cucumis melo OX=3656 GN=ycf1 PE=3 SV=1	[more]
A0A249RZD8	5.3e-27	98.44	Protein TIC 214 OS=Cucumis melo var. cantalupensis OX=3658 GN=ycf1 PE=3 SV=1	[more]
A0A249RZN8	5.3e-27	98.44	Protein TIC 214 OS=Cucumis melo var. cantalupensis OX=3658 GN=ycf1 PE=3 SV=1	[more]
A0A286NG49	5.3e-27	98.44	Protein TIC 214 OS=Cucumis melo var. flexuosus OX=1120798 GN=ycf1 PE=3 SV=1	[more]

BLAST of MELO3C030628 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG01130.1	3.6e-28	92.19	Ycf1 protein	[more]
ATCG01000.1	3.6e-28	92.19	Ycf1 protein	[more]
AT2G07739.1	7.6e-18	71.88	Ycf1 protein	[more]
ATMG00370.1	7.6e-18	71.88	Ycf1 protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008896	Protein TIC214	PFAM	PF05758	Ycf1	coord: 1..64 e-value: 3.2E-37 score: 128.0
IPR008896	Protein TIC214	PANTHER	PTHR33163	PROTEIN TIC 214-RELATED	coord: 1..64
None	No IPR available	PANTHER	PTHR33163:SF13	PROTEIN TIC 214-RELATED	coord: 1..64

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C030628.1	MELO3C030628.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane