MELO3C030604 (gene) Melon (DHL92) v4

Overview
NameMELO3C030604
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionReverse transcriptase
Locationchr04: 6538109 .. 6538734 (-)
RNA-Seq ExpressionMELO3C030604
SyntenyMELO3C030604
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTTCATGTGACTTCACGGAGCTTTCCATTGATTACATGACTGAAATATTGAGCCTGAGGCTATATGGTACCGTGTGCACACAGGTTATATTTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGATGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGTCGGGTGGGCCCCACTACATCGTAGGACTAGTAAACGTTGATTGTACTGGGCGTGCCCTACACCACGTAGATCGGTCATGTTAGTTAAAACGTTTGATGTACTTGTTATGCTTTGTTAGATTTTTTTATGATGAACTTGGAAGATATTTTAGGAAACCTTATTTATTACATGTTTATGTTAAATGCTTTGTTTGAGCATATTTATATGTCTAAAGGTTTATCACATGTTCTGACGTCCGGATTTAGAGTTTTAAATTTAGTCACTCACTGGGCCTCGTAGCTCATTCTTTTCAAAATGTTTCCCACTTTTCAGGTAGAGATTGAGCTCCTGGTGTCTGATACACTACCAATGTCTGCTGAAAGTTTCGAATCAAACTCCAGTACGTGGTTGGAGTTGTATTTTGAGTCTGTTCATGTTGAAATGTTTTGTAAGGTTTAAATAAT

mRNA sequence

ATGTTTTCATGTGACTTCACGGAGCTTTCCATTGATTACATGACTGAAATATTGAGCCTGAGGCTATATGGTACCGTGTGCACACAGGTTATATTTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGATGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGTCGGGTAGAGATTGAGCTCCTGGTGTCTGATACACTACCAATGTCTGCTGAAAGTTTCGAATCAAACTCCAGTACGTGGTTGGAGTTGTATTTTGAGTCTGTTCATGTTGAAATGTTTTGTAAGGTTTAAATAAT

Coding sequence (CDS)

ATGTTTTCATGTGACTTCACGGAGCTTTCCATTGATTACATGACTGAAATATTGAGCCTGAGGCTATATGGTACCGTGTGCACACAGGTTATATTTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGATGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGTCGGGTAGAGATTGAGCTCCTGGTGTCTGATACACTACCAATGTCTGCTGAAAGTTTCGAATCAAACTCCAGTACGTGGTTGGAGTTGTATTTTGAGTCTGTTCATGTTGAAATGTTTTGTAAGGTTTAA

Protein sequence

MFSCDFTELSIDYMTEILSLRLYGTVCTQVIFPLLTLSVLRDNDAVVSDGRAPLRQRRWECRVEIELLVSDTLPMSAESFESNSSTWLELYFESVHVEMFCKV
Homology
[Close]
BLAST of MELO3C030604 vs. NCBI nr
Match: TYK27997.1 (putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 125.2 bits (313), Expect = 3.3e-25
Identity = 70/93 (75.27%), Postives = 70/93 (75.27%), Query Frame = 0 

Query: 9   LSIDYMTEILSLRLYGTVCTQVIFPLLTLSVLRDNDAVVSDGRAPLRQRRWECRVEIELL 68
           LSIDYMTEILSLR YGTVCTQVIFPL TLSVLRDNDAV                VEIEL 
Sbjct: 204 LSIDYMTEILSLRPYGTVCTQVIFPLSTLSVLRDNDAV----------------VEIELP 263

Query: 69  VSDTLPMSAESFESNSSTWLELYFESVHVEMFC 102
           V DTLP S ESFESNSSTWLELYFE VHVEMFC
Sbjct: 264 VPDTLPSSTESFESNSSTWLELYFEFVHVEMFC 280

[Close]
BLAST of MELO3C030604 vs. NCBI nr
Match: KAA0066850.1 (putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 125.2 bits (313), Expect = 3.3e-25
Identity = 70/93 (75.27%), Postives = 70/93 (75.27%), Query Frame = 0 

Query: 9   LSIDYMTEILSLRLYGTVCTQVIFPLLTLSVLRDNDAVVSDGRAPLRQRRWECRVEIELL 68
           LSIDYMTEILSLR YGTVCTQVIFPL TLSVLRDNDAV                VEIEL 
Sbjct: 218 LSIDYMTEILSLRPYGTVCTQVIFPLSTLSVLRDNDAV----------------VEIELP 277

Query: 69  VSDTLPMSAESFESNSSTWLELYFESVHVEMFC 102
           V DTLP S ESFESNSSTWLELYFE VHVEMFC
Sbjct: 278 VPDTLPSSTESFESNSSTWLELYFEFVHVEMFC 294

[Close]
BLAST of MELO3C030604 vs. NCBI nr
Match: TYK08952.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 115.9 bits (289), Expect = 2.0e-22
Identity = 67/91 (73.63%), Postives = 68/91 (74.73%), Query Frame = 0 

Query: 9    LSIDYMTEILSLRLYGTVCTQVIFPLLTLSVLRDNDAVVSDGRAPLRQRRWECRVEIELL 68
            LSIDYMTEILSLRL GTVCTQVIFPL TLSVLRDN+AV                VEIEL 
Sbjct: 1281 LSIDYMTEILSLRLDGTVCTQVIFPLSTLSVLRDNNAV----------------VEIELP 1340

Query: 69   VSDTLPMSAESFESNSSTWLELYFESVHVEM 100
            V DTLP SAE FESNSSTWLELY ESVHVEM
Sbjct: 1341 VPDTLPTSAEIFESNSSTWLELYLESVHVEM 1355

[Close]
BLAST of MELO3C030604 vs. NCBI nr
Match: KAA0037581.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 112.8 bits (281), Expect = 1.7e-21
Identity = 63/89 (70.79%), Postives = 64/89 (71.91%), Query Frame = 0 

Query: 30  VIFPLLTLSVLRDNDAVVSDGRAPLRQRRWECR---------------VEIELLVSDTLP 89
           VIFPL TLSVL DNDAVVS G+APLRQRRWECR               VEIEL V D LP
Sbjct: 99  VIFPLSTLSVLSDNDAVVSAGQAPLRQRRWECRTGPTTSFFKMFSTFLVEIELPVPDILP 158

Query: 90  MSAESFESNSSTWLELYFESVHVEMFCKV 104
            SAES  SNSSTWLELYFESVHVEMF KV
Sbjct: 159 TSAESSRSNSSTWLELYFESVHVEMFYKV 187

[Close]
BLAST of MELO3C030604 vs. NCBI nr
Match: TYK03091.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 112.8 bits (281), Expect = 1.7e-21
Identity = 63/89 (70.79%), Postives = 64/89 (71.91%), Query Frame = 0 

Query: 30  VIFPLLTLSVLRDNDAVVSDGRAPLRQRRWECR---------------VEIELLVSDTLP 89
           VIFPL TLSVL DNDAVVS G+APLRQRRWECR               VEIEL V D LP
Sbjct: 99  VIFPLSTLSVLSDNDAVVSAGQAPLRQRRWECRTGPTTSFFKMFSTFLVEIELPVPDILP 158

Query: 90  MSAESFESNSSTWLELYFESVHVEMFCKV 104
            SAES  SNSSTWLELYFESVHVEMF KV
Sbjct: 159 TSAESSRSNSSTWLELYFESVHVEMFYKV 187

[Close]
BLAST of MELO3C030604 vs. ExPASy TrEMBL
Match: A0A5A7VI26 (Putative DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold271G002210 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.6e-25
Identity = 70/93 (75.27%), Postives = 70/93 (75.27%), Query Frame = 0 

Query: 9   LSIDYMTEILSLRLYGTVCTQVIFPLLTLSVLRDNDAVVSDGRAPLRQRRWECRVEIELL 68
           LSIDYMTEILSLR YGTVCTQVIFPL TLSVLRDNDAV                VEIEL 
Sbjct: 218 LSIDYMTEILSLRPYGTVCTQVIFPLSTLSVLRDNDAV----------------VEIELP 277

Query: 69  VSDTLPMSAESFESNSSTWLELYFESVHVEMFC 102
           V DTLP S ESFESNSSTWLELYFE VHVEMFC
Sbjct: 278 VPDTLPSSTESFESNSSTWLELYFEFVHVEMFC 294

[Close]
BLAST of MELO3C030604 vs. ExPASy TrEMBL
Match: A0A5D3DW05 (Putative DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G002130 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.6e-25
Identity = 70/93 (75.27%), Postives = 70/93 (75.27%), Query Frame = 0 

Query: 9   LSIDYMTEILSLRLYGTVCTQVIFPLLTLSVLRDNDAVVSDGRAPLRQRRWECRVEIELL 68
           LSIDYMTEILSLR YGTVCTQVIFPL TLSVLRDNDAV                VEIEL 
Sbjct: 204 LSIDYMTEILSLRPYGTVCTQVIFPLSTLSVLRDNDAV----------------VEIELP 263

Query: 69  VSDTLPMSAESFESNSSTWLELYFESVHVEMFC 102
           V DTLP S ESFESNSSTWLELYFE VHVEMFC
Sbjct: 264 VPDTLPSSTESFESNSSTWLELYFEFVHVEMFC 280

[Close]
BLAST of MELO3C030604 vs. ExPASy TrEMBL
Match: A0A5D3CCC7 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold314G00430 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 9.8e-23
Identity = 67/91 (73.63%), Postives = 68/91 (74.73%), Query Frame = 0 

Query: 9    LSIDYMTEILSLRLYGTVCTQVIFPLLTLSVLRDNDAVVSDGRAPLRQRRWECRVEIELL 68
            LSIDYMTEILSLRL GTVCTQVIFPL TLSVLRDN+AV                VEIEL 
Sbjct: 1281 LSIDYMTEILSLRLDGTVCTQVIFPLSTLSVLRDNNAV----------------VEIELP 1340

Query: 69   VSDTLPMSAESFESNSSTWLELYFESVHVEM 100
            V DTLP SAE FESNSSTWLELY ESVHVEM
Sbjct: 1341 VPDTLPTSAEIFESNSSTWLELYLESVHVEM 1355

[Close]
BLAST of MELO3C030604 vs. ExPASy TrEMBL
Match: A0A5D3BTP3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold374G00020 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 8.3e-22
Identity = 63/89 (70.79%), Postives = 64/89 (71.91%), Query Frame = 0 

Query: 30  VIFPLLTLSVLRDNDAVVSDGRAPLRQRRWECR---------------VEIELLVSDTLP 89
           VIFPL TLSVL DNDAVVS G+APLRQRRWECR               VEIEL V D LP
Sbjct: 99  VIFPLSTLSVLSDNDAVVSAGQAPLRQRRWECRTGPTTSFFKMFSTFLVEIELPVPDILP 158

Query: 90  MSAESFESNSSTWLELYFESVHVEMFCKV 104
            SAES  SNSSTWLELYFESVHVEMF KV
Sbjct: 159 TSAESSRSNSSTWLELYFESVHVEMFYKV 187

[Close]
BLAST of MELO3C030604 vs. ExPASy TrEMBL
Match: A0A5A7T7M6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold277G002250 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 8.3e-22
Identity = 63/89 (70.79%), Postives = 64/89 (71.91%), Query Frame = 0 

Query: 30  VIFPLLTLSVLRDNDAVVSDGRAPLRQRRWECR---------------VEIELLVSDTLP 89
           VIFPL TLSVL DNDAVVS G+APLRQRRWECR               VEIEL V D LP
Sbjct: 99  VIFPLSTLSVLSDNDAVVSAGQAPLRQRRWECRTGPTTSFFKMFSTFLVEIELPVPDILP 158

Query: 90  MSAESFESNSSTWLELYFESVHVEMFCKV 104
            SAES  SNSSTWLELYFESVHVEMF KV
Sbjct: 159 TSAESSRSNSSTWLELYFESVHVEMFYKV 187

The following BLAST results are available for this feature:
BLAST of MELO3C030604 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK27997.13.3e-2575.27putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
KAA0066850.13.3e-2575.27putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
TYK08952.12.0e-2273.63DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
KAA0037581.11.7e-2170.79reverse transcriptase [Cucumis melo var. makuwa][more]
TYK03091.11.7e-2170.79reverse transcriptase [Cucumis melo var. makuwa][more]
BLAST of MELO3C030604 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C030604 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7VI261.6e-2575.27Putative DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=... [more]
A0A5D3DW051.6e-2575.27Putative DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=... [more]
A0A5D3CCC79.8e-2373.63DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5D3BTP38.3e-2270.79Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold37... [more]
A0A5A7T7M68.3e-2270.79Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold27... [more]
BLAST of MELO3C030604 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C030604.1MELO3C030604.1mRNA