MELO3C030595.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C030595.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionGATA zinc finger domain-containing protein 10-like isoform X2
Locationchr04: 18805375 .. 18805613 (+)
RNA-Seq ExpressionMELO3C030595.jh1
SyntenyMELO3C030595.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
CCAACATCCATGTGTGATAAATATTGTGATTCTGAGGTTGGTACAGGATATTATGATTCAAGGGTCGGTCCATCGTCTTCATACATAGATGTCGATCCATCAACTTCTTACATGCATGGACATGGACGTGGTCATGGAGATCATAATGAATATCTATACTATGAAGCACATGCATAGGTATCAAATCGATAAAAGTATCAACCAGAATCAAAGAACCAAGAGGAGCCAAAATAACATAG

mRNA sequence

CCAACATCCATGTGTGATAAATATTGTGATTCTGAGGTTGGTACAGGATATTATGATTCAAGGGTCGGTCCATCGTCTTCATACATAGATGTCGATCCATCAACTTCTTACATGCATGGACATGGACGTGGTCATGGAGATCATAATGAATATCTATACTATGAAGCACATGCATAGGTATCAAATCGATAAAAGTATCAACCAGAATCAAAGAACCAAGAGGAGCCAAAATAACATAG

Coding sequence (CDS)

ATGTGTGATAAATATTGTGATTCTGAGGTTGGTACAGGATATTATGATTCAAGGGTCGGTCCATCGTCTTCATACATAGATGTCGATCCATCAACTTCTTACATGCATGGACATGGACGTGGTCATGGAGATCATAATGAATATCTATACTATGAAGCACATGCATAG

Protein sequence

MCDKYCDSEVGTGYYDSRVGPSSSYIDVDPSTSYMHGHGRGHGDHNEYLYYEAHA
Homology
BLAST of MELO3C030595.jh1 vs. NCBI nr
Match: KAA0048355.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 97.4 bits (241), Expect = 9.64e-25
Identity = 42/51 (82.35%), Postives = 48/51 (94.12%), Query Frame = 0

Query: 5  YCDSEVGTGYYDSRVGPSSSYIDVDPSTSYMHGHGRGHGDHNEYLYYEAHA 55
          YCDS++GTGYYD+ VGPSSSY+DVDPSTSYMHGHGRG+G HNEYLY+EA A
Sbjct: 11 YCDSKIGTGYYDAGVGPSSSYMDVDPSTSYMHGHGRGYGKHNEYLYHEAPA 61

BLAST of MELO3C030595.jh1 vs. NCBI nr
Match: TYK01111.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 97.4 bits (241), Expect = 4.29e-24
Identity = 42/51 (82.35%), Postives = 48/51 (94.12%), Query Frame = 0

Query: 5   YCDSEVGTGYYDSRVGPSSSYIDVDPSTSYMHGHGRGHGDHNEYLYYEAHA 55
           YCDS++GTGYYD+ VGPSSSY+DVDPSTSYMHGHGRG+G HNEYLY+EA A
Sbjct: 65  YCDSKIGTGYYDAGVGPSSSYMDVDPSTSYMHGHGRGYGKHNEYLYHEAPA 115

BLAST of MELO3C030595.jh1 vs. NCBI nr
Match: KAA0041612.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa] >TYK19645.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 90.9 bits (224), Expect = 2.69e-22
Identity = 41/49 (83.67%), Postives = 44/49 (89.80%), Query Frame = 0

Query: 5  YCDSEVGTGYYDSRVGPSSSYIDVDPSTSYMHGHGRGHGDHNEYLYYEA 53
          YCDSEVG GYYDS VGPSSSY+DV PSTSYMHGHGRG+G HNEYL +EA
Sbjct: 11 YCDSEVGIGYYDSGVGPSSSYMDVIPSTSYMHGHGRGYGGHNEYLCHEA 59

BLAST of MELO3C030595.jh1 vs. NCBI nr
Match: KAA0049532.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa] >TYK16210.1 GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 90.9 bits (224), Expect = 1.74e-21
Identity = 39/51 (76.47%), Postives = 45/51 (88.24%), Query Frame = 0

Query: 5   YCDSEVGTGYYDSRVGPSSSYIDVDPSTSYMHGHGRGHGDHNEYLYYEAHA 55
           YCDSEV TGYYD+ +GP SSY+DV PS SYMHGHGRG+G+HNEYLY+EA A
Sbjct: 59  YCDSEVSTGYYDAGIGPLSSYMDVGPSNSYMHGHGRGYGEHNEYLYHEAPA 109

BLAST of MELO3C030595.jh1 vs. NCBI nr
Match: KAA0062642.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 92.0 bits (227), Expect = 3.20e-21
Identity = 40/51 (78.43%), Postives = 45/51 (88.24%), Query Frame = 0

Query: 5   YCDSEVGTGYYDSRVGPSSSYIDVDPSTSYMHGHGRGHGDHNEYLYYEAHA 55
           YCD EVG GYYD+ VGPSSSY+DV PSTSYMHGH RG+G+HNEYLY+EA A
Sbjct: 130 YCDFEVGIGYYDAGVGPSSSYVDVSPSTSYMHGHSRGYGEHNEYLYHEAPA 180

BLAST of MELO3C030595.jh1 vs. ExPASy TrEMBL
Match: A0A5A7U3Y0 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G00710 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 4.67e-25
Identity = 42/51 (82.35%), Postives = 48/51 (94.12%), Query Frame = 0

Query: 5  YCDSEVGTGYYDSRVGPSSSYIDVDPSTSYMHGHGRGHGDHNEYLYYEAHA 55
          YCDS++GTGYYD+ VGPSSSY+DVDPSTSYMHGHGRG+G HNEYLY+EA A
Sbjct: 11 YCDSKIGTGYYDAGVGPSSSYMDVDPSTSYMHGHGRGYGKHNEYLYHEAPA 61

BLAST of MELO3C030595.jh1 vs. ExPASy TrEMBL
Match: A0A5D3BMS3 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold612G00070 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 2.08e-24
Identity = 42/51 (82.35%), Postives = 48/51 (94.12%), Query Frame = 0

Query: 5   YCDSEVGTGYYDSRVGPSSSYIDVDPSTSYMHGHGRGHGDHNEYLYYEAHA 55
           YCDS++GTGYYD+ VGPSSSY+DVDPSTSYMHGHGRG+G HNEYLY+EA A
Sbjct: 65  YCDSKIGTGYYDAGVGPSSSYMDVDPSTSYMHGHGRGYGKHNEYLYHEAPA 115

BLAST of MELO3C030595.jh1 vs. ExPASy TrEMBL
Match: A0A5D3D7W2 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold242G00340 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.30e-22
Identity = 41/49 (83.67%), Postives = 44/49 (89.80%), Query Frame = 0

Query: 5  YCDSEVGTGYYDSRVGPSSSYIDVDPSTSYMHGHGRGHGDHNEYLYYEA 53
          YCDSEVG GYYDS VGPSSSY+DV PSTSYMHGHGRG+G HNEYL +EA
Sbjct: 11 YCDSEVGIGYYDSGVGPSSSYMDVIPSTSYMHGHGRGYGGHNEYLCHEA 59

BLAST of MELO3C030595.jh1 vs. ExPASy TrEMBL
Match: A0A5D3CXX3 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold209G001390 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 8.43e-22
Identity = 39/51 (76.47%), Postives = 45/51 (88.24%), Query Frame = 0

Query: 5   YCDSEVGTGYYDSRVGPSSSYIDVDPSTSYMHGHGRGHGDHNEYLYYEAHA 55
           YCDSEV TGYYD+ +GP SSY+DV PS SYMHGHGRG+G+HNEYLY+EA A
Sbjct: 59  YCDSEVSTGYYDAGIGPLSSYMDVGPSNSYMHGHGRGYGEHNEYLYHEAPA 109

BLAST of MELO3C030595.jh1 vs. ExPASy TrEMBL
Match: A0A5A7V342 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G001560 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.55e-21
Identity = 40/51 (78.43%), Postives = 45/51 (88.24%), Query Frame = 0

Query: 5   YCDSEVGTGYYDSRVGPSSSYIDVDPSTSYMHGHGRGHGDHNEYLYYEAHA 55
           YCD EVG GYYD+ VGPSSSY+DV PSTSYMHGH RG+G+HNEYLY+EA A
Sbjct: 130 YCDFEVGIGYYDAGVGPSSSYVDVSPSTSYMHGHSRGYGEHNEYLYHEAPA 180

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0048355.19.64e-2582.35GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var.... [more]
TYK01111.14.29e-2482.35GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var.... [more]
KAA0041612.12.69e-2283.67mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
KAA0049532.11.74e-2176.47GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var.... [more]
KAA0062642.13.20e-2178.43mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7U3Y04.67e-2582.35GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va... [more]
A0A5D3BMS32.08e-2482.35GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va... [more]
A0A5D3D7W21.30e-2283.67Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
A0A5D3CXX38.43e-2276.47GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va... [more]
A0A5A7V3421.55e-2178.43Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C030595.jh1.t1MELO3C030595.jh1.t1mRNA