MELO3C030554.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C030554.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionRetrotrans_gag domain-containing protein
Locationchr04: 5075717 .. 5075935 (-)
RNA-Seq ExpressionMELO3C030554.jh1
SyntenyMELO3C030554.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGACGATCGAAGACAAGAAAGTTAAGATGGTCGTATTGAAACTCAAATCAGGTGCATCGGCTTGGTGGGATCAAATCCAAGTCAATCGATGCTTATGCTCACTTCTAATTGGAAAGACAACATCGTTTAAAGTAAAAGATGTAGCGAACAATGTTTTGGGACGATGGAACTACTTATTCTATCATCAAAGCACTCAAAATCTGCATGTTATATAG

mRNA sequence

ATGAAGACGATCGAAGACAAGAAAGTTAAGATGGTCGTATTGAAACTCAAATCAGGTGCATCGGCTTGGTGGGATCAAATCCAAGTCAATCGATGCTTATGCTCACTTCTAATTGGAAAGACAACATCGTTTAAAGTAAAAGATGTAGCGAACAATGTTTTGGGACGATGGAACTACTTATTCTATCATCAAAGCACTCAAAATCTGCATGTTATATAG

Coding sequence (CDS)

ATGAAGACGATCGAAGACAAGAAAGTTAAGATGGTCGTATTGAAACTCAAATCAGGTGCATCGGCTTGGTGGGATCAAATCCAAGTCAATCGATGCTTATGCTCACTTCTAATTGGAAAGACAACATCGTTTAAAGTAAAAGATGTAGCGAACAATGTTTTGGGACGATGGAACTACTTATTCTATCATCAAAGCACTCAAAATCTGCATGTTATATAG

Protein sequence

MKTIEDKKVKMVVLKLKSGASAWWDQIQVNRCLCSLLIGKTTSFKVKDVANNVLGRWNYLFYHQSTQNLHVI
Homology
BLAST of MELO3C030554.jh1 vs. NCBI nr
Match: KAA0057976.1 (uncharacterized protein E6C27_scaffold274G002800 [Cucumis melo var. makuwa])

HSP 1 Score: 52.4 bits (124), Expect = 3.52e-06
Identity = 24/30 (80.00%), Postives = 26/30 (86.67%), Query Frame = 0

Query: 1  MKTIEDKKVKMVVLKLKSGASAWWDQIQVN 30
          M+  +DKKVKMV LKLK GASAWWDQIQVN
Sbjct: 31 MEIAKDKKVKMVALKLKLGASAWWDQIQVN 60

BLAST of MELO3C030554.jh1 vs. NCBI nr
Match: KAA0054551.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYK20400.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 50.1 bits (118), Expect = 1.43e-05
Identity = 23/27 (85.19%), Postives = 24/27 (88.89%), Query Frame = 0

Query: 1   MKTIEDKKVKMVVLKLKSGASAWWDQI 27
           M+T EDKKVKMV LKLK GASAWWDQI
Sbjct: 89  METTEDKKVKMVALKLKLGASAWWDQI 115

BLAST of MELO3C030554.jh1 vs. NCBI nr
Match: XP_031745523.1 (uncharacterized protein LOC116405899 [Cucumis sativus])

HSP 1 Score: 51.2 bits (121), Expect = 2.92e-05
Identity = 22/35 (62.86%), Postives = 28/35 (80.00%), Query Frame = 0

Query: 1  MKTIEDKKVKMVVLKLKSGASAWWDQIQVNRCLCS 35
          M T E KKV++V LKLK GASAWW+Q++VNR  C+
Sbjct: 31 MDTPEQKKVRLVALKLKGGASAWWEQLEVNRQRCN 65

BLAST of MELO3C030554.jh1 vs. NCBI nr
Match: TYJ99683.1 (uncharacterized protein E5676_scaffold562G00770 [Cucumis melo var. makuwa])

HSP 1 Score: 50.8 bits (120), Expect = 3.64e-05
Identity = 22/34 (64.71%), Postives = 28/34 (82.35%), Query Frame = 0

Query: 1  MKTIEDKKVKMVVLKLKSGASAWWDQIQVNRCLC 34
          M T+E KKV +V LKLK+GASAWWDQ++V+R  C
Sbjct: 19 MNTLEVKKVHLVALKLKAGASAWWDQLEVSRQRC 52

BLAST of MELO3C030554.jh1 vs. NCBI nr
Match: KAA0054761.1 (uncharacterized protein E6C27_scaffold437G00390 [Cucumis melo var. makuwa])

HSP 1 Score: 48.9 bits (115), Expect = 3.94e-05
Identity = 22/34 (64.71%), Postives = 27/34 (79.41%), Query Frame = 0

Query: 1  MKTIEDKKVKMVVLKLKSGASAWWDQIQVNRCLC 34
          M T E KKV +V LKLK+GASAWWDQ++V+R  C
Sbjct: 19 MNTPEVKKVHLVALKLKAGASAWWDQLEVSRQRC 52

BLAST of MELO3C030554.jh1 vs. ExPASy TrEMBL
Match: A0A5A7UUZ0 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G002800 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 1.70e-06
Identity = 24/30 (80.00%), Postives = 26/30 (86.67%), Query Frame = 0

Query: 1  MKTIEDKKVKMVVLKLKSGASAWWDQIQVN 30
          M+  +DKKVKMV LKLK GASAWWDQIQVN
Sbjct: 31 MEIAKDKKVKMVALKLKLGASAWWDQIQVN 60

BLAST of MELO3C030554.jh1 vs. ExPASy TrEMBL
Match: A0A5A7ULZ0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold519G00250 PE=4 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 6.91e-06
Identity = 23/27 (85.19%), Postives = 24/27 (88.89%), Query Frame = 0

Query: 1   MKTIEDKKVKMVVLKLKSGASAWWDQI 27
           M+T EDKKVKMV LKLK GASAWWDQI
Sbjct: 89  METTEDKKVKMVALKLKLGASAWWDQI 115

BLAST of MELO3C030554.jh1 vs. ExPASy TrEMBL
Match: A0A5D3BK55 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold562G00770 PE=4 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 1.76e-05
Identity = 22/34 (64.71%), Postives = 28/34 (82.35%), Query Frame = 0

Query: 1  MKTIEDKKVKMVVLKLKSGASAWWDQIQVNRCLC 34
          M T+E KKV +V LKLK+GASAWWDQ++V+R  C
Sbjct: 19 MNTLEVKKVHLVALKLKAGASAWWDQLEVSRQRC 52

BLAST of MELO3C030554.jh1 vs. ExPASy TrEMBL
Match: A0A5A7UMH8 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold437G00390 PE=4 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 1.91e-05
Identity = 22/34 (64.71%), Postives = 27/34 (79.41%), Query Frame = 0

Query: 1  MKTIEDKKVKMVVLKLKSGASAWWDQIQVNRCLC 34
          M T E KKV +V LKLK+GASAWWDQ++V+R  C
Sbjct: 19 MNTPEVKKVHLVALKLKAGASAWWDQLEVSRQRC 52

BLAST of MELO3C030554.jh1 vs. ExPASy TrEMBL
Match: A0A5A7TDG8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G001280 PE=4 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 1.28e-04
Identity = 21/31 (67.74%), Postives = 25/31 (80.65%), Query Frame = 0

Query: 1  MKTIEDKKVKMVVLKLKSGASAWWDQIQVNR 31
          M T + KKV +V LKLK GASAWWDQ++VNR
Sbjct: 1  MDTPDRKKVHLVALKLKGGASAWWDQLEVNR 31

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0057976.13.52e-0680.00uncharacterized protein E6C27_scaffold274G002800 [Cucumis melo var. makuwa][more]
KAA0054551.11.43e-0585.19reverse transcriptase [Cucumis melo var. makuwa] >TYK20400.1 reverse transcripta... [more]
XP_031745523.12.92e-0562.86uncharacterized protein LOC116405899 [Cucumis sativus][more]
TYJ99683.13.64e-0564.71uncharacterized protein E5676_scaffold562G00770 [Cucumis melo var. makuwa][more]
KAA0054761.13.94e-0564.71uncharacterized protein E6C27_scaffold437G00390 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7UUZ01.70e-0680.00Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5A7ULZ06.91e-0685.19Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold51... [more]
A0A5D3BK551.76e-0564.71CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
A0A5A7UMH81.91e-0564.71Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5A7TDG81.28e-0467.74Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C030554.jh1.t1MELO3C030554.jh1.t1mRNA