MELO3C030526 (gene) Melon (DHL92) v4

Overview


Name	MELO3C030526
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	RNA helicase family protein
Location	chr04: 14055446 .. 14055877 (+)
RNA-Seq Expression	MELO3C030526
Synteny	MELO3C030526

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTGGTCTCGTTTTTTTAGAACTCAAGGACATAATGGTGGATGAAGCACATGAAAGGTCTATCTCAACTGACATGTTACTTGGCCTCTTGAAAAAGGTATGAAATCATTGATCCGGACCAAATATATCTTTCAATAACTTGGCAACTTAAGCATTATGTAATTGTATTGATTATGTATTCCAGATTCAACGGCGACGATCCGATCTGCGATTGATTATCTCTTCTACTATAATTGAGGCTAAATCAATGTCAACTTTCTTCCAAATGAAGTTATATTTTTTATTATTATTACTATTGTTTGAAACTGAACTCATTATGGTTTTAAGTCTCTGTTTCTTATCAAAAAAGAGAAAAAAAAAAGCCCTGAAATAGAGGAGTAAAACATGTAGACTATTTAAGGAAAAAAACCTTGGTGTGAAGGTTAAAGTTTGA

mRNA sequence

TGTGGTCTCGTTTTTTTAGAACTCAAGGACATAATGGTGGATGAAGCACATGAAAGGTCTATCTCAACTGACATGTTACTTGGCCTCTTGAAAAAGATTCAACGGCGACGATCCGATCTGCGATTGATTATCTCTTCTACTATAATTGAGGCTAAATCAATGTCAACTTTCTTCCAAATGAAGTTATATTTTTTATTATTATTACTATTGTTTGAAACTGAACTCATTATGGTTTTAAGTCTCTGTTTCTTATCAAAAAAGAGAAAAAAAAAAGCCCTGAAATAGAGGAGTAAAACATGTAGACTATTTAAGGAAAAAAACCTTGGTGTGAAGGTTAAAGTTTGA

Coding sequence (CDS)

ATGGTGGATGAAGCACATGAAAGGTCTATCTCAACTGACATGTTACTTGGCCTCTTGAAAAAGATTCAACGGCGACGATCCGATCTGCGATTGATTATCTCTTCTACTATAATTGAGGCTAAATCAATGTCAACTTTCTTCCAAATGAAGTTATATTTTTTATTATTATTACTATTGTTTGAAACTGAACTCATTATGGTTTTAAGTCTCTGTTTCTTATCAAAAAAGAGAAAAAAAAAAGCCCTGAAATAG

Protein sequence

MVDEAHERSISTDMLLGLLKKIQRRRSDLRLIISSTIIEAKSMSTFFQMKLYFLLLLLLFETELIMVLSLCFLSKKRKKKALK

Homology

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BLAST of MELO3C030526 vs. NCBI nr
Match: KAA0039745.1 (putative pre-mRNA-splicing factor ATP-dependent RNA helicase C20H4.09 [Cucumis melo var. makuwa] >TYK23035.1 putative pre-mRNA-splicing factor ATP-dependent RNA helicase C20H4.09 [Cucumis melo var. makuwa])

HSP 1 Score: 87.0 bits (214), Expect = 8.1e-14
Identity = 47/52 (90.38%), Postives = 47/52 (90.38%), Query Frame = 0


Query: 1   MVDEAHERSISTDMLLGLLKKIQRRRSDLRLIISSTIIEAKSMSTFFQMKLY 53
           MVDEAHERSISTDMLLGLLKKIQRRR DLRLIISS  IEAKSMSTFFQM  Y
Sbjct: 68  MVDEAHERSISTDMLLGLLKKIQRRRPDLRLIISSATIEAKSMSTFFQMSCY 119

[Close]

BLAST of MELO3C030526 vs. NCBI nr
Match: KAA0057022.1 (putative pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 85.5 bits (210), Expect = 2.4e-13
Identity = 46/49 (93.88%), Postives = 46/49 (93.88%), Query Frame = 0


Query: 1   MVDEAHERSISTDMLLGLLKKIQRRRSDLRLIISSTIIEAKSMSTFFQM 50
           MVDEAHERSISTDMLLGLLKKIQRRR DLRLIISS  IEAKSMSTFFQM
Sbjct: 146 MVDEAHERSISTDMLLGLLKKIQRRRPDLRLIISSATIEAKSMSTFFQM 194

[Close]

BLAST of MELO3C030526 vs. NCBI nr
Match: XP_008442984.1 (PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9 isoform X3 [Cucumis melo])

HSP 1 Score: 85.5 bits (210), Expect = 2.4e-13
Identity = 46/49 (93.88%), Postives = 46/49 (93.88%), Query Frame = 0


Query: 1  MVDEAHERSISTDMLLGLLKKIQRRRSDLRLIISSTIIEAKSMSTFFQM 50
          MVDEAHERSISTDMLLGLLKKIQRRR DLRLIISS  IEAKSMSTFFQM
Sbjct: 51 MVDEAHERSISTDMLLGLLKKIQRRRPDLRLIISSATIEAKSMSTFFQM 99

[Close]

BLAST of MELO3C030526 vs. NCBI nr
Match: XP_004148780.1 (probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9 [Cucumis sativus] >KGN64712.1 hypothetical protein Csa_013324 [Cucumis sativus])

HSP 1 Score: 85.5 bits (210), Expect = 2.4e-13
Identity = 46/49 (93.88%), Postives = 46/49 (93.88%), Query Frame = 0


Query: 1   MVDEAHERSISTDMLLGLLKKIQRRRSDLRLIISSTIIEAKSMSTFFQM 50
           MVDEAHERSISTDMLLGLLKKIQRRR DLRLIISS  IEAKSMSTFFQM
Sbjct: 168 MVDEAHERSISTDMLLGLLKKIQRRRPDLRLIISSATIEAKSMSTFFQM 216

[Close]

BLAST of MELO3C030526 vs. NCBI nr
Match: XP_008442967.1 (PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9 isoform X1 [Cucumis melo])

HSP 1 Score: 85.5 bits (210), Expect = 2.4e-13
Identity = 46/49 (93.88%), Postives = 46/49 (93.88%), Query Frame = 0


Query: 1   MVDEAHERSISTDMLLGLLKKIQRRRSDLRLIISSTIIEAKSMSTFFQM 50
           MVDEAHERSISTDMLLGLLKKIQRRR DLRLIISS  IEAKSMSTFFQM
Sbjct: 167 MVDEAHERSISTDMLLGLLKKIQRRRPDLRLIISSATIEAKSMSTFFQM 215

[Close]

BLAST of MELO3C030526 vs. ExPASy Swiss-Prot
Match: F4JRJ6 (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9 OS=Arabidopsis thaliana OX=3702 GN=At4g18465 PE=3 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 3.2e-13
Identity = 39/47 (82.98%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 1   MVDEAHERSISTDMLLGLLKKIQRRRSDLRLIISSTIIEAKSMSTFF 48
           M+DEAHERSISTD+LLGLLKKIQRRR +LRLIISS  IEAK+MS FF
Sbjct: 168 MIDEAHERSISTDILLGLLKKIQRRRPELRLIISSATIEAKTMSNFF 214

[Close]

BLAST of MELO3C030526 vs. ExPASy Swiss-Prot
Match: Q9BKQ8 (Probable ATP-dependent RNA helicase DHX35 homolog OS=Caenorhabditis elegans OX=6239 GN=ddx-35 PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 4.0e-08
Identity = 28/49 (57.14%), Postives = 40/49 (81.63%), Query Frame = 0


Query: 1   MVDEAHERSISTDMLLGLLKKIQRRRSDLRLIISSTIIEAKSMSTFFQM 50
           M+DEAHERS +TD+LLGLL+KI + R+DLR+I+SS  ++A+    FF+M
Sbjct: 196 MIDEAHERSCNTDILLGLLRKIIQIRNDLRIIVSSATLDAELFKDFFEM 244

[Close]

BLAST of MELO3C030526 vs. ExPASy Swiss-Prot
Match: Q38953 (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 OS=Arabidopsis thaliana OX=3702 GN=At3g26560 PE=1 SV=2)

HSP 1 Score: 58.2 bits (139), Expect = 5.3e-08
Identity = 27/47 (57.45%), Postives = 38/47 (80.85%), Query Frame = 0


Query: 1   MVDEAHERSISTDMLLGLLKKIQRRRSDLRLIISSTIIEAKSMSTFF 48
           M+DEAHER+I TD+L GLLKK+ +RR DLRLI++S  ++A+  S +F
Sbjct: 633 MLDEAHERTIHTDVLFGLLKKLMKRRLDLRLIVTSATLDAEKFSGYF 679

[Close]

BLAST of MELO3C030526 vs. ExPASy Swiss-Prot
Match: F4KGU4 (ATP-dependent RNA helicase DEAH12, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g10370 PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.2e-07
Identity = 27/47 (57.45%), Postives = 37/47 (78.72%), Query Frame = 0


Query: 1   MVDEAHERSISTDMLLGLLKKIQRRRSDLRLIISSTIIEAKSMSTFF 48
           ++DEAHERS++TD+LL LLKK+  RR DLRL+I S   +AK +S +F
Sbjct: 425 IIDEAHERSLNTDLLLALLKKLLSRRIDLRLVIMSATADAKQLSQYF 471

[Close]

BLAST of MELO3C030526 vs. ExPASy Swiss-Prot
Match: Q9H5Z1 (Probable ATP-dependent RNA helicase DHX35 OS=Homo sapiens OX=9606 GN=DHX35 PE=1 SV=2)

HSP 1 Score: 57.0 bits (136), Expect = 1.2e-07
Identity = 26/47 (55.32%), Postives = 37/47 (78.72%), Query Frame = 0


Query: 1   MVDEAHERSISTDMLLGLLKKIQRRRSDLRLIISSTIIEAKSMSTFF 48
           M+DEAHER++ TD+ +GLLKKIQ++R DLRLI++S  ++A     FF
Sbjct: 174 MLDEAHERTLYTDIAIGLLKKIQKKRGDLRLIVASATLDADKFRDFF 220

[Close]

BLAST of MELO3C030526 vs. ExPASy TrEMBL
Match: A0A5A7TE68 (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase C20H4.09 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11218G00010 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 3.9e-14
Identity = 47/52 (90.38%), Postives = 47/52 (90.38%), Query Frame = 0


Query: 1   MVDEAHERSISTDMLLGLLKKIQRRRSDLRLIISSTIIEAKSMSTFFQMKLY 53
           MVDEAHERSISTDMLLGLLKKIQRRR DLRLIISS  IEAKSMSTFFQM  Y
Sbjct: 68  MVDEAHERSISTDMLLGLLKKIQRRRPDLRLIISSATIEAKSMSTFFQMSCY 119

[Close]

BLAST of MELO3C030526 vs. ExPASy TrEMBL
Match: A0A1S3B7Q6 (probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103486709 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.1e-13
Identity = 46/49 (93.88%), Postives = 46/49 (93.88%), Query Frame = 0


Query: 1   MVDEAHERSISTDMLLGLLKKIQRRRSDLRLIISSTIIEAKSMSTFFQM 50
           MVDEAHERSISTDMLLGLLKKIQRRR DLRLIISS  IEAKSMSTFFQM
Sbjct: 71  MVDEAHERSISTDMLLGLLKKIQRRRPDLRLIISSATIEAKSMSTFFQM 119

[Close]

BLAST of MELO3C030526 vs. ExPASy TrEMBL
Match: A0A5A7UME2 (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold96G002070 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.1e-13
Identity = 46/49 (93.88%), Postives = 46/49 (93.88%), Query Frame = 0


Query: 1   MVDEAHERSISTDMLLGLLKKIQRRRSDLRLIISSTIIEAKSMSTFFQM 50
           MVDEAHERSISTDMLLGLLKKIQRRR DLRLIISS  IEAKSMSTFFQM
Sbjct: 146 MVDEAHERSISTDMLLGLLKKIQRRRPDLRLIISSATIEAKSMSTFFQM 194

[Close]

BLAST of MELO3C030526 vs. ExPASy TrEMBL
Match: A0A0A0LV75 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G077130 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.1e-13
Identity = 46/49 (93.88%), Postives = 46/49 (93.88%), Query Frame = 0


Query: 1   MVDEAHERSISTDMLLGLLKKIQRRRSDLRLIISSTIIEAKSMSTFFQM 50
           MVDEAHERSISTDMLLGLLKKIQRRR DLRLIISS  IEAKSMSTFFQM
Sbjct: 168 MVDEAHERSISTDMLLGLLKKIQRRRPDLRLIISSATIEAKSMSTFFQM 216

[Close]

BLAST of MELO3C030526 vs. ExPASy TrEMBL
Match: A0A1S3B6Y9 (probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486709 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.1e-13
Identity = 46/49 (93.88%), Postives = 46/49 (93.88%), Query Frame = 0


Query: 1   MVDEAHERSISTDMLLGLLKKIQRRRSDLRLIISSTIIEAKSMSTFFQM 50
           MVDEAHERSISTDMLLGLLKKIQRRR DLRLIISS  IEAKSMSTFFQM
Sbjct: 167 MVDEAHERSISTDMLLGLLKKIQRRRPDLRLIISSATIEAKSMSTFFQM 215

[Close]

BLAST of MELO3C030526 vs. TAIR 10
Match: AT4G18465.1 (RNA helicase family protein )

HSP 1 Score: 75.5 bits (184), Expect = 2.3e-14
Identity = 39/47 (82.98%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 1   MVDEAHERSISTDMLLGLLKKIQRRRSDLRLIISSTIIEAKSMSTFF 48
           M+DEAHERSISTD+LLGLLKKIQRRR +LRLIISS  IEAK+MS FF
Sbjct: 168 MIDEAHERSISTDILLGLLKKIQRRRPELRLIISSATIEAKTMSNFF 214

[Close]

BLAST of MELO3C030526 vs. TAIR 10
Match: AT3G26560.1 (ATP-dependent RNA helicase, putative )

HSP 1 Score: 58.2 bits (139), Expect = 3.8e-09
Identity = 27/47 (57.45%), Postives = 38/47 (80.85%), Query Frame = 0


Query: 1   MVDEAHERSISTDMLLGLLKKIQRRRSDLRLIISSTIIEAKSMSTFF 48
           M+DEAHER+I TD+L GLLKK+ +RR DLRLI++S  ++A+  S +F
Sbjct: 633 MLDEAHERTIHTDVLFGLLKKLMKRRLDLRLIVTSATLDAEKFSGYF 679

[Close]

BLAST of MELO3C030526 vs. TAIR 10
Match: AT5G10370.1 (helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related )

HSP 1 Score: 57.0 bits (136), Expect = 8.4e-09
Identity = 27/47 (57.45%), Postives = 37/47 (78.72%), Query Frame = 0


Query: 1   MVDEAHERSISTDMLLGLLKKIQRRRSDLRLIISSTIIEAKSMSTFF 48
           ++DEAHERS++TD+LL LLKK+  RR DLRL+I S   +AK +S +F
Sbjct: 425 IIDEAHERSLNTDLLLALLKKLLSRRIDLRLVIMSATADAKQLSQYF 471

[Close]

BLAST of MELO3C030526 vs. TAIR 10
Match: AT5G13010.1 (RNA helicase family protein )

HSP 1 Score: 54.3 bits (129), Expect = 5.4e-08
Identity = 24/47 (51.06%), Postives = 36/47 (76.60%), Query Frame = 0


Query: 1   MVDEAHERSISTDMLLGLLKKIQRRRSDLRLIISSTIIEAKSMSTFF 48
           ++DEAHERS++TD+L G+LKK+  RR D +LI++S  + A+  S FF
Sbjct: 676 VMDEAHERSLNTDVLFGILKKVVARRRDFKLIVTSATLNAQKFSNFF 722

[Close]

BLAST of MELO3C030526 vs. TAIR 10
Match: AT1G32490.1 (RNA helicase family protein )

HSP 1 Score: 53.9 bits (128), Expect = 7.1e-08
Identity = 26/47 (55.32%), Postives = 37/47 (78.72%), Query Frame = 0


Query: 1   MVDEAHERSISTDMLLGLLKKIQRRRSDLRLIISSTIIEAKSMSTFF 48
           +VDEAHER++STD+L GL+K I R R DL+L+ISS  ++A+  S +F
Sbjct: 522 IVDEAHERTLSTDILFGLVKDIARFRPDLKLLISSATMDAEKFSDYF 568

The following BLAST results are available for this feature:

BLAST of MELO3C030526 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0039745.1	8.1e-14	90.38	putative pre-mRNA-splicing factor ATP-dependent RNA helicase C20H4.09 [Cucumis m...	[more]
KAA0057022.1	2.4e-13	93.88	putative pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9 isoform X1 [C...	[more]
XP_008442984.1	2.4e-13	93.88	PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9 is...	[more]
XP_004148780.1	2.4e-13	93.88	probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9 [Cucumis sati...	[more]
XP_008442967.1	2.4e-13	93.88	PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9 is...	[more]

BLAST of MELO3C030526 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4JRJ6	3.2e-13	82.98	Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9 OS=Arabidopsi...	[more]
Q9BKQ8	4.0e-08	57.14	Probable ATP-dependent RNA helicase DHX35 homolog OS=Caenorhabditis elegans OX=6...	[more]
Q38953	5.3e-08	57.45	Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 OS=Arabidopsi...	[more]
F4KGU4	1.2e-07	57.45	ATP-dependent RNA helicase DEAH12, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]
Q9H5Z1	1.2e-07	55.32	Probable ATP-dependent RNA helicase DHX35 OS=Homo sapiens OX=9606 GN=DHX35 PE=1 ...	[more]

BLAST of MELO3C030526 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TE68	3.9e-14	90.38	Putative pre-mRNA-splicing factor ATP-dependent RNA helicase C20H4.09 OS=Cucumis...	[more]
A0A1S3B7Q6	1.1e-13	93.88	probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9 isoform X2 OS...	[more]
A0A5A7UME2	1.1e-13	93.88	Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9 isoform X1 OS...	[more]
A0A0A0LV75	1.1e-13	93.88	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G077130 PE=4 SV=1	[more]
A0A1S3B6Y9	1.1e-13	93.88	probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9 isoform X1 OS...	[more]

BLAST of MELO3C030526 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G18465.1	2.3e-14	82.98	RNA helicase family protein	[more]
AT3G26560.1	3.8e-09	57.45	ATP-dependent RNA helicase, putative	[more]
AT5G10370.1	8.4e-09	57.45	helicase domain-containing protein / IBR domain-containing protein / zinc finger...	[more]
AT5G13010.1	5.4e-08	51.06	RNA helicase family protein	[more]
AT1G32490.1	7.1e-08	55.32	RNA helicase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 1..54 e-value: 2.1E-15 score: 58.5
None	No IPR available	PANTHER	PTHR18934	ATP-DEPENDENT RNA HELICASE	coord: 1..55
None	No IPR available	PANTHER	PTHR18934:SF136	ATP-DEPENDENT RNA HELICASE DHX35-RELATED	coord: 1..55

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C030526.1	MELO3C030526.1	mRNA