MELO3C030460 (gene) Melon (DHL92) v4

Overview


Name	MELO3C030460
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	chaperone protein DnaJ-like
Location	chr04: 3205305 .. 3206185 (+)
RNA-Seq Expression	MELO3C030460
Synteny	MELO3C030460

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TATTTTTGGAAGTATAATCCATTACACAGCCAACCGTTCGACATTTCAATGGCGTCTTCGTCTTTCTCACTCTCCGCAAATTGCTTCAGTTCCACAACTACACTATCAGGTAACTCAAAATCCTTTTCATTCTTCTAAATATTTTCATAAGCTCCTCTTAAGATTGTATAACTCACTTCCAATTTCTGATCAATGATCTATTTAATTCACAGCACTTAGAGATTGTAGTAATCAAAAGCTCAACCTAATTCACAACGGCTTCCATGATTATTCTTCCCCTGCTCGATTTCCTCATCTAATTCTCAAGGTTCTGCTTTCTTTTTTCTTTTTTTCTTTTTTTGTTTGAAATGTGTGGAAAATGAACTTGGAATGTTAAATTTGATGGACAAAATTGAAAATGTTTGTTTGTGTTTTTCTGATCGATTAGGCAGCTAAGAATGATCGGAATACCAAACCTAATAGTGTGATTTGTGGCGATTGCGATGGAAATGGTGAGTCGATTTGTGAGTTTAGTTTAAACGGTTTAGGTTTTGGGAATGATATGAAGGCTGATTGTTTTGTAAAATTGAATGAAAATAGGTGCTGTTCTTTGCTCACAATGTAAAGGAAATGGAGTTAATGCCGTCGATTTCTTCAATGGACAGTTCAAAGCCGGTAAATCTTGTTGGCTGTGTGGGTAAGTTTTGTTACAAATACATGACGAACTATGGTTTTAAAGAATGTTGATTGAAATTAATATCATCTTAGCTTGTGAATAGTATTCTGCATTAATGCTTAGAAAAATGGATCATCCATACAAAAATTTGGTTCTTCGGTTCAATGATTTTACTGTAGTTTTATACCTTGTTGATATTACATTTCATGCTCAAAATGTCAATTGA

mRNA sequence

TATTTTTGGAAGTATAATCCATTACACAGCCAACCGTTCGACATTTCAATGGCGTCTTCGTCTTTCTCACTCTCCGCAAATTGCTTCAGTTCCACAACTACACTATCAGCACTTAGAGATTGTAGTAATCAAAAGCTCAACCTAATTCACAACGGCTTCCATGATTATTCTTCCCCTGCTCGATTTCCTCATCTAATTCTCAAGGCAGCTAAGAATGATCGGAATACCAAACCTAATAGTGTGATTTGTGGCGATTGCGATGGAAATGGTGCTGTTCTTTGCTCACAATGTAAAGGAAATGGAGTTAATGCCGTCGATTTCTTCAATGGACAGTTCAAAGCCGTTTTATACCTTGTTGATATTACATTTCATGCTCAAAATGTCAATTGA

Coding sequence (CDS)

ATGGCGTCTTCGTCTTTCTCACTCTCCGCAAATTGCTTCAGTTCCACAACTACACTATCAGCACTTAGAGATTGTAGTAATCAAAAGCTCAACCTAATTCACAACGGCTTCCATGATTATTCTTCCCCTGCTCGATTTCCTCATCTAATTCTCAAGGCAGCTAAGAATGATCGGAATACCAAACCTAATAGTGTGATTTGTGGCGATTGCGATGGAAATGGTGCTGTTCTTTGCTCACAATGTAAAGGAAATGGAGTTAATGCCGTCGATTTCTTCAATGGACAGTTCAAAGCCGTTTTATACCTTGTTGATATTACATTTCATGCTCAAAATGTCAATTGA

Protein sequence

MASSSFSLSANCFSSTTTLSALRDCSNQKLNLIHNGFHDYSSPARFPHLILKAAKNDRNTKPNSVICGDCDGNGAVLCSQCKGNGVNAVDFFNGQFKAVLYLVDITFHAQNVN

Homology

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BLAST of MELO3C030460 vs. NCBI nr
Match: XP_008466412.1 (PREDICTED: chaperone protein DnaJ-like [Cucumis melo] >TYK31430.1 chaperone protein DnaJ-like [Cucumis melo var. makuwa])

HSP 1 Score: 202.6 bits (514), Expect = 1.8e-48
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MASSSFSLSANCFSSTTTLSALRDCSNQKLNLIHNGFHDYSSPARFPHLILKAAKNDRNT 60
          MASSSFSLSANCFSSTTTLSALRDCSNQKLNLIHNGFHDYSSPARFPHLILKAAKNDRNT
Sbjct: 1  MASSSFSLSANCFSSTTTLSALRDCSNQKLNLIHNGFHDYSSPARFPHLILKAAKNDRNT 60

Query: 61 KPNSVICGDCDGNGAVLCSQCKGNGVNAVDFFNGQFKA 99
          KPNSVICGDCDGNGAVLCSQCKGNGVNAVDFFNGQFKA
Sbjct: 61 KPNSVICGDCDGNGAVLCSQCKGNGVNAVDFFNGQFKA 98

[Close]

BLAST of MELO3C030460 vs. NCBI nr
Match: KAA0038807.1 (chaperone protein DnaJ-like [Cucumis melo var. makuwa])

HSP 1 Score: 199.5 bits (506), Expect = 1.5e-47
Identity = 96/98 (97.96%), Postives = 97/98 (98.98%), Query Frame = 0


Query: 1  MASSSFSLSANCFSSTTTLSALRDCSNQKLNLIHNGFHDYSSPARFPHLILKAAKNDRNT 60
          MASSSFSLSANCFSSTTTLSA+RDCSNQKLNLIHN FHDYSSPARFPHLILKAAKNDRNT
Sbjct: 1  MASSSFSLSANCFSSTTTLSAIRDCSNQKLNLIHNAFHDYSSPARFPHLILKAAKNDRNT 60

Query: 61 KPNSVICGDCDGNGAVLCSQCKGNGVNAVDFFNGQFKA 99
          KPNSVICGDCDGNGAVLCSQCKGNGVNAVDFFNGQFKA
Sbjct: 61 KPNSVICGDCDGNGAVLCSQCKGNGVNAVDFFNGQFKA 98

[Close]

BLAST of MELO3C030460 vs. NCBI nr
Match: XP_031737825.1 (uncharacterized protein LOC101218754 isoform X1 [Cucumis sativus])

HSP 1 Score: 192.6 bits (488), Expect = 1.9e-45
Identity = 100/116 (86.21%), Postives = 105/116 (90.52%), Query Frame = 0


Query: 1   MASSSFSLSANCFSSTTTLSA-LRDCSNQKLNLIHNGFHDYSSPARFPHLILKAAKNDRN 60
           MASSSFS SANCFSSTTTLSA +RDCSNQKLNLIHNGFHDYSSPARFPHLILKAAKNDRN
Sbjct: 1   MASSSFSPSANCFSSTTTLSAIIRDCSNQKLNLIHNGFHDYSSPARFPHLILKAAKNDRN 60

Query: 61  TKPNSVICGDCDGNGAVLCSQCKGNGVNAVDFFNGQFKA--VLYLVDITFHAQNVN 114
           TKPNSVICGDCDGNGAV+CSQCKG GVNAVDFFNGQFKA    +L   TF+A NV+
Sbjct: 61  TKPNSVICGDCDGNGAVVCSQCKGKGVNAVDFFNGQFKAGESCWLCG-TFNADNVS 115

[Close]

BLAST of MELO3C030460 vs. NCBI nr
Match: XP_004136477.1 (protein BUNDLE SHEATH DEFECTIVE 2, chloroplastic isoform X2 [Cucumis sativus] >KGN60105.1 hypothetical protein Csa_001346 [Cucumis sativus])

HSP 1 Score: 191.0 bits (484), Expect = 5.4e-45
Identity = 94/99 (94.95%), Postives = 96/99 (96.97%), Query Frame = 0


Query: 1  MASSSFSLSANCFSSTTTLSA-LRDCSNQKLNLIHNGFHDYSSPARFPHLILKAAKNDRN 60
          MASSSFS SANCFSSTTTLSA +RDCSNQKLNLIHNGFHDYSSPARFPHLILKAAKNDRN
Sbjct: 1  MASSSFSPSANCFSSTTTLSAIIRDCSNQKLNLIHNGFHDYSSPARFPHLILKAAKNDRN 60

Query: 61 TKPNSVICGDCDGNGAVLCSQCKGNGVNAVDFFNGQFKA 99
          TKPNSVICGDCDGNGAV+CSQCKG GVNAVDFFNGQFKA
Sbjct: 61 TKPNSVICGDCDGNGAVVCSQCKGKGVNAVDFFNGQFKA 99

[Close]

BLAST of MELO3C030460 vs. NCBI nr
Match: XP_038899028.1 (protein BUNDLE SHEATH DEFECTIVE 2, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 182.2 bits (461), Expect = 2.5e-42
Identity = 87/98 (88.78%), Postives = 94/98 (95.92%), Query Frame = 0


Query: 1  MASSSFSLSANCFSSTTTLSALRDCSNQKLNLIHNGFHDYSSPARFPHLILKAAKNDRNT 60
          MASSSFS SANCFSS+TT+SA+R  SNQKLNL++NGF+DYSSPARFPHL +KAAKNDRNT
Sbjct: 1  MASSSFSASANCFSSSTTISAIRGSSNQKLNLVNNGFYDYSSPARFPHLNIKAAKNDRNT 60

Query: 61 KPNSVICGDCDGNGAVLCSQCKGNGVNAVDFFNGQFKA 99
          KPNSVICGDCDGNGAVLCSQCKGNGVNAVDFFNGQFKA
Sbjct: 61 KPNSVICGDCDGNGAVLCSQCKGNGVNAVDFFNGQFKA 98

[Close]

BLAST of MELO3C030460 vs. ExPASy Swiss-Prot
Match: Q9SN73 (Protein BUNDLE SHEATH DEFECTIVE 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=BSD2 PE=1 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 3.7e-12
Identity = 31/49 (63.27%), Postives = 39/49 (79.59%), Query Frame = 0


Query: 51  LKAAKND-RNTKPNSVICGDCDGNGAVLCSQCKGNGVNAVDFFNGQFKA 99
           +KAA N+ + TKPNS++C +C+G G V CSQCKG GVN +D FNGQFKA
Sbjct: 55  VKAANNNPQGTKPNSLVCANCEGEGCVACSQCKGGGVNLIDHFNGQFKA 103

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BLAST of MELO3C030460 vs. ExPASy Swiss-Prot
Match: Q9XF14 (Protein BUNDLE SHEATH DEFECTIVE 2, chloroplastic OS=Zea mays OX=4577 GN=BSD2 PE=2 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 9.1e-11
Identity = 27/51 (52.94%), Postives = 42/51 (82.35%), Query Frame = 0


Query: 52 KAAKNDRNTKPN----SVICGDCDGNGAVLCSQCKGNGVNAVDFFNGQFKA 99
          KA +ND++ K +    S++C DC+GNGA++C++C+GNGVN+VD+F G+FKA
Sbjct: 43 KATENDQSAKKHQKVKSILCQDCEGNGAIVCTKCEGNGVNSVDYFEGRFKA 93

[Close]

BLAST of MELO3C030460 vs. ExPASy TrEMBL
Match: A0A5D3E725 (Chaperone protein DnaJ-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G007410 PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 8.7e-49
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MASSSFSLSANCFSSTTTLSALRDCSNQKLNLIHNGFHDYSSPARFPHLILKAAKNDRNT 60
          MASSSFSLSANCFSSTTTLSALRDCSNQKLNLIHNGFHDYSSPARFPHLILKAAKNDRNT
Sbjct: 1  MASSSFSLSANCFSSTTTLSALRDCSNQKLNLIHNGFHDYSSPARFPHLILKAAKNDRNT 60

Query: 61 KPNSVICGDCDGNGAVLCSQCKGNGVNAVDFFNGQFKA 99
          KPNSVICGDCDGNGAVLCSQCKGNGVNAVDFFNGQFKA
Sbjct: 61 KPNSVICGDCDGNGAVLCSQCKGNGVNAVDFFNGQFKA 98

[Close]

BLAST of MELO3C030460 vs. ExPASy TrEMBL
Match: A0A1S3CSH4 (chaperone protein DnaJ-like OS=Cucumis melo OX=3656 GN=LOC103503827 PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 8.7e-49
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MASSSFSLSANCFSSTTTLSALRDCSNQKLNLIHNGFHDYSSPARFPHLILKAAKNDRNT 60
          MASSSFSLSANCFSSTTTLSALRDCSNQKLNLIHNGFHDYSSPARFPHLILKAAKNDRNT
Sbjct: 1  MASSSFSLSANCFSSTTTLSALRDCSNQKLNLIHNGFHDYSSPARFPHLILKAAKNDRNT 60

Query: 61 KPNSVICGDCDGNGAVLCSQCKGNGVNAVDFFNGQFKA 99
          KPNSVICGDCDGNGAVLCSQCKGNGVNAVDFFNGQFKA
Sbjct: 61 KPNSVICGDCDGNGAVLCSQCKGNGVNAVDFFNGQFKA 98

[Close]

BLAST of MELO3C030460 vs. ExPASy TrEMBL
Match: A0A5A7TB44 (Chaperone protein DnaJ-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold92G003640 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 7.4e-48
Identity = 96/98 (97.96%), Postives = 97/98 (98.98%), Query Frame = 0


Query: 1  MASSSFSLSANCFSSTTTLSALRDCSNQKLNLIHNGFHDYSSPARFPHLILKAAKNDRNT 60
          MASSSFSLSANCFSSTTTLSA+RDCSNQKLNLIHN FHDYSSPARFPHLILKAAKNDRNT
Sbjct: 1  MASSSFSLSANCFSSTTTLSAIRDCSNQKLNLIHNAFHDYSSPARFPHLILKAAKNDRNT 60

Query: 61 KPNSVICGDCDGNGAVLCSQCKGNGVNAVDFFNGQFKA 99
          KPNSVICGDCDGNGAVLCSQCKGNGVNAVDFFNGQFKA
Sbjct: 61 KPNSVICGDCDGNGAVLCSQCKGNGVNAVDFFNGQFKA 98

[Close]

BLAST of MELO3C030460 vs. ExPASy TrEMBL
Match: A0A0A0LDP8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G878740 PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 2.6e-45
Identity = 94/99 (94.95%), Postives = 96/99 (96.97%), Query Frame = 0


Query: 1  MASSSFSLSANCFSSTTTLSA-LRDCSNQKLNLIHNGFHDYSSPARFPHLILKAAKNDRN 60
          MASSSFS SANCFSSTTTLSA +RDCSNQKLNLIHNGFHDYSSPARFPHLILKAAKNDRN
Sbjct: 1  MASSSFSPSANCFSSTTTLSAIIRDCSNQKLNLIHNGFHDYSSPARFPHLILKAAKNDRN 60

Query: 61 TKPNSVICGDCDGNGAVLCSQCKGNGVNAVDFFNGQFKA 99
          TKPNSVICGDCDGNGAV+CSQCKG GVNAVDFFNGQFKA
Sbjct: 61 TKPNSVICGDCDGNGAVVCSQCKGKGVNAVDFFNGQFKA 99

[Close]

BLAST of MELO3C030460 vs. ExPASy TrEMBL
Match: A0A6J1D4M9 (uncharacterized protein LOC111016947 OS=Momordica charantia OX=3673 GN=LOC111016947 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 3.7e-31
Identity = 74/98 (75.51%), Postives = 80/98 (81.63%), Query Frame = 0


Query: 1  MASSSFSLSANCFSSTTTLSALRDCSNQKLNLIHNGFHDYSSPARFPHLILKAAKNDRNT 60
          MA S+FS SA CF+S TT+ A+  CSN KLNLI NG H YS  ARFPHL  KAAKNDRNT
Sbjct: 1  MAFSAFSASAGCFNS-TTVKAIGGCSNHKLNLIDNGLH-YSPAARFPHLNGKAAKNDRNT 60

Query: 61 KPNSVICGDCDGNGAVLCSQCKGNGVNAVDFFNGQFKA 99
          KPNS+ICGDCDGNGAVLCSQCKG+GVN  D FNGQFKA
Sbjct: 61 KPNSMICGDCDGNGAVLCSQCKGSGVNPADVFNGQFKA 96

[Close]

BLAST of MELO3C030460 vs. TAIR 10
Match: AT3G47650.1 (DnaJ/Hsp40 cysteine-rich domain superfamily protein )

HSP 1 Score: 72.4 bits (176), Expect = 2.6e-13
Identity = 31/49 (63.27%), Postives = 39/49 (79.59%), Query Frame = 0


Query: 51  LKAAKND-RNTKPNSVICGDCDGNGAVLCSQCKGNGVNAVDFFNGQFKA 99
           +KAA N+ + TKPNS++C +C+G G V CSQCKG GVN +D FNGQFKA
Sbjct: 55  VKAANNNPQGTKPNSLVCANCEGEGCVACSQCKGGGVNLIDHFNGQFKA 103

The following BLAST results are available for this feature:

BLAST of MELO3C030460 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008466412.1	1.8e-48	100.00	PREDICTED: chaperone protein DnaJ-like [Cucumis melo] >TYK31430.1 chaperone prot...	[more]
KAA0038807.1	1.5e-47	97.96	chaperone protein DnaJ-like [Cucumis melo var. makuwa]	[more]
XP_031737825.1	1.9e-45	86.21	uncharacterized protein LOC101218754 isoform X1 [Cucumis sativus]	[more]
XP_004136477.1	5.4e-45	94.95	protein BUNDLE SHEATH DEFECTIVE 2, chloroplastic isoform X2 [Cucumis sativus] >K...	[more]
XP_038899028.1	2.5e-42	88.78	protein BUNDLE SHEATH DEFECTIVE 2, chloroplastic-like [Benincasa hispida]	[more]

BLAST of MELO3C030460 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SN73	3.7e-12	63.27	Protein BUNDLE SHEATH DEFECTIVE 2, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]
Q9XF14	9.1e-11	52.94	Protein BUNDLE SHEATH DEFECTIVE 2, chloroplastic OS=Zea mays OX=4577 GN=BSD2 PE=...	[more]

BLAST of MELO3C030460 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E725	8.7e-49	100.00	Chaperone protein DnaJ-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A1S3CSH4	8.7e-49	100.00	chaperone protein DnaJ-like OS=Cucumis melo OX=3656 GN=LOC103503827 PE=4 SV=1	[more]
A0A5A7TB44	7.4e-48	97.96	Chaperone protein DnaJ-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A0A0LDP8	2.6e-45	94.95	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G878740 PE=4 SV=1	[more]
A0A6J1D4M9	3.7e-31	75.51	uncharacterized protein LOC111016947 OS=Momordica charantia OX=3673 GN=LOC111016...	[more]

BLAST of MELO3C030460 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G47650.1	2.6e-13	63.27	DnaJ/Hsp40 cysteine-rich domain superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR15852:SF51	PROTEIN BUNDLE SHEATH DEFECTIVE 2, CHLOROPLASTIC	coord: 2..98
None	No IPR available	PANTHER	PTHR15852	PLASTID TRANSCRIPTIONALLY ACTIVE PROTEIN	coord: 2..98
IPR036410	Heat shock protein DnaJ, cysteine-rich domain superfamily	SUPERFAMILY	57938	DnaJ/Hsp40 cysteine-rich domain	coord: 62..91

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C030460.1	MELO3C030460.1	mRNA