MELO3C030430 (gene) Melon (DHL92) v4

Overview
NameMELO3C030430
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionTransmembrane emp24 domain-containing protein p24beta2-like
Locationchr11: 16721065 .. 16721202 (-)
RNA-Seq ExpressionMELO3C030430
SyntenyMELO3C030430
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGCCCAGACCTCGTGACCACCGTCCTCTTGTACAGTCCTCACCACCACCATCCACGAATCTCCAACTCTGAAGACCACAACTACCAAGATTTGCCTAACGAAGTCGCGCGACCACCATTGCACCTCTTTCCCTAACCA

mRNA sequence

TGCCCAGACCTCGTGACCACCGTCCTCTTGTACAGTCCTCACCACCACCATCCACGAATCTCCAACTCTGAAGACCACAACTACCAAGATTTGCCTAACGAAGTCGCGCGACCACCATTGCACCTCTTTCCCTAACCA

Coding sequence (CDS)

TGCCCAGACCTCGTGACCACCGTCCTCTTGTACAGTCCTCACCACCACCATCCACGAATCTCCAACTCTGAAGACCACAACTACCAAGATTTGCCTAACGAAGTCGCGCGACCACCATTGCACCTCTTTCCCTAA

Protein sequence

CPDLVTTVLLYSPHHHHPRISNSEDHNYQDLPNEVARPPLHLFP
Homology
[Close]
BLAST of MELO3C030430 vs. NCBI nr
Match: KAA0046502.1 (uncharacterized protein E6C27_scaffold543G00880 [Cucumis melo var. makuwa])

HSP 1 Score: 58.5 bits (140), Expect = 1.6e-05
Identity = 27/34 (79.41%), Postives = 29/34 (85.29%), Query Frame = 0 

Query: 1  CPDLVTTVLLYSPHHHHPRISNSEDHNYQDLPNE 35
          CPDLVTTVL     HHHPRISNSEDH+YQDLPN+
Sbjct: 7  CPDLVTTVLSL---HHHPRISNSEDHDYQDLPNQ 37

[Close]
BLAST of MELO3C030430 vs. NCBI nr
Match: TYJ97709.1 (transmembrane emp24 domain-containing protein p24beta2-like [Cucumis melo var. makuwa])

HSP 1 Score: 58.5 bits (140), Expect = 1.6e-05
Identity = 27/34 (79.41%), Postives = 29/34 (85.29%), Query Frame = 0 

Query: 1  CPDLVTTVLLYSPHHHHPRISNSEDHNYQDLPNE 35
          CPDLVTTVL     HHHPRISNSEDH+YQDLPN+
Sbjct: 7  CPDLVTTVLSL---HHHPRISNSEDHDYQDLPNQ 37

[Close]
BLAST of MELO3C030430 vs. ExPASy TrEMBL
Match: A0A5D3BF88 (Transmembrane emp24 domain-containing protein p24beta2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1251G00020 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 7.9e-06
Identity = 27/34 (79.41%), Postives = 29/34 (85.29%), Query Frame = 0 

Query: 1  CPDLVTTVLLYSPHHHHPRISNSEDHNYQDLPNE 35
          CPDLVTTVL     HHHPRISNSEDH+YQDLPN+
Sbjct: 7  CPDLVTTVLSL---HHHPRISNSEDHDYQDLPNQ 37

[Close]
BLAST of MELO3C030430 vs. ExPASy TrEMBL
Match: A0A5A7TSV8 (ABC transporter domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold543G00880 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 7.9e-06
Identity = 27/34 (79.41%), Postives = 29/34 (85.29%), Query Frame = 0 

Query: 1  CPDLVTTVLLYSPHHHHPRISNSEDHNYQDLPNE 35
          CPDLVTTVL     HHHPRISNSEDH+YQDLPN+
Sbjct: 7  CPDLVTTVLSL---HHHPRISNSEDHDYQDLPNQ 37

The following BLAST results are available for this feature:
BLAST of MELO3C030430 vs.
Match NameE-valueIdentityDescription
BLAST of MELO3C030430 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0046502.11.6e-0579.41uncharacterized protein E6C27_scaffold543G00880 [Cucumis melo var. makuwa][more]
TYJ97709.11.6e-0579.41transmembrane emp24 domain-containing protein p24beta2-like [Cucumis melo var. m... [more]
BLAST of MELO3C030430 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BF887.9e-0679.41Transmembrane emp24 domain-containing protein p24beta2-like OS=Cucumis melo var.... [more]
A0A5A7TSV87.9e-0679.41ABC transporter domain-containing protein OS=Cucumis melo var. makuwa OX=1194695... [more]
BLAST of MELO3C030430 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 15..44

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C030430.1MELO3C030430.1mRNA