MELO3C030339 (gene) Melon (DHL92) v4

Overview
NameMELO3C030339
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionPhytosulfokine-beta
Locationchr03: 28409923 .. 28410586 (-)
RNA-Seq ExpressionMELO3C030339
SyntenyMELO3C030339
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATACACCAAACTTCGTATATATTCACACATAAAGAAGGAAAAAGAATTAATGCAAGGGTGTGGCCAATTACGTACCGTCGTCATATCCTACTCATCCGTTACGTTCTCAAATCTCTCTCTCTCCCTGCTCTCCTAATTATTTCTGCCAGCGACCATATTTCATTTTCAATTGTGTGTTTAAAAAGCCGAGAATCGCAATCCTTTTTCCTCCACTCTTAATTCATTTCCAATTCACAAAAATATGTCGAAGAAGCTCGCAGCTCTCTTCACCATTATTGCGGCACTTGTAACAATAATGTCCCTCATCGTCATACCCTCCTCCGAAGCAGCTCGTCCTATCCCTTCATTATTCAAACCCCAAAATCCAGTAAGTTTAATTTAATTTCAAAAATCTCCTTTCAAAACTCATTACTACTTATTCCATTATTCTTAATTTCCATTGCGTATTTCTGTAATTGATCAGATCGTTTCTCGAGAGCTCGTCGCTGATCATAATAACGAGGGAATATCATGTGAAGGACTAGGGAAAGAAGATTGCCTGATTAAAAGAACCTTACAGGCTCATATTGATTACGTTTATACTTGTGATCCAACCAAGCCATGAACTATACTGCTCATCTTTTATTTTATTTTCTTTGATCATTAGTTACAGTTTCATAATTAA

mRNA sequence

ATACACCAAACTTCGTATATATTCACACATAAAGAAGGAAAAAGAATTAATGCAAGGGTGTGGCCAATTACGTACCGTCGTCATATCCTACTCATCCGTTACGTTCTCAAATCTCTCTCTCTCCCTGCTCTCCTAATTATTTCTGCCAGCGACCATATTTCATTTTCAATTGTGTGTTTAAAAAGCCGAGAATCGCAATCCTTTTTCCTCCACTCTTAATTCATTTCCAATTCACAAAAATATGTCGAAGAAGCTCGCAGCTCTCTTCACCATTATTGCGGCACTTGTAACAATAATGTCCCTCATCGTCATACCCTCCTCCGAAGCAGCTCGTCCTATCCCTTCATTATTCAAACCCCAAAATCCAATCGTTTCTCGAGAGCTCGTCGCTGATCATAATAACGAGGGAATATCATGTGAAGGACTAGGGAAAGAAGATTGCCTGATTAAAAGAACCTTACAGGCTCATATTGATTACTTACAGTTTCATAATTAA

Coding sequence (CDS)

ATGTCGAAGAAGCTCGCAGCTCTCTTCACCATTATTGCGGCACTTGTAACAATAATGTCCCTCATCGTCATACCCTCCTCCGAAGCAGCTCGTCCTATCCCTTCATTATTCAAACCCCAAAATCCAATCGTTTCTCGAGAGCTCGTCGCTGATCATAATAACGAGGGAATATCATGTGAAGGACTAGGGAAAGAAGATTGCCTGATTAAAAGAACCTTACAGGCTCATATTGATTACTTACAGTTTCATAATTAA

Protein sequence

MSKKLAALFTIIAALVTIMSLIVIPSSEAARPIPSLFKPQNPIVSRELVADHNNEGISCEGLGKEDCLIKRTLQAHIDYLQFHN
Homology
BLAST of MELO3C030339 vs. NCBI nr
Match: KAA0060965.1 (phytosulfokines-like [Cucumis melo var. makuwa])

HSP 1 Score: 153.7 bits (387), Expect = 7.1e-34
Identity = 79/80 (98.75%), Postives = 80/80 (100.00%), Query Frame = 0

Query: 1  MSKKLAALFTIIAALVTIMSLIVIPSSEAARPIPSLFKPQNPIVSRELVADHNNEGISCE 60
          MSKKLAALFTIIAALVTIMSLIVIPSSEAARPIPSLFKPQNPIVSRELVADHNNEGISCE
Sbjct: 1  MSKKLAALFTIIAALVTIMSLIVIPSSEAARPIPSLFKPQNPIVSRELVADHNNEGISCE 60

Query: 61 GLGKEDCLIKRTLQAHIDYL 81
          GLGKEDCLIKRTLQAHIDY+
Sbjct: 61 GLGKEDCLIKRTLQAHIDYV 80

BLAST of MELO3C030339 vs. NCBI nr
Match: XP_031739822.1 (phytosulfokines-like [Cucumis sativus] >KAE8653250.1 hypothetical protein Csa_020040 [Cucumis sativus])

HSP 1 Score: 87.0 bits (214), Expect = 8.2e-14
Identity = 52/81 (64.20%), Postives = 63/81 (77.78%), Query Frame = 0

Query: 1  MSK-KLAALFTIIAALVTIMSLIVIPSSEAARPIPSLFKPQNPIVSRELVADHNNEGISC 60
          MSK  LAAL T++AALVTIMSLI+IPSS+A     +  +P + IVS+ELVAD NN+   C
Sbjct: 1  MSKINLAALITLLAALVTIMSLIIIPSSQAT----TSCEPPHRIVSQELVADQNNDE-PC 60

Query: 61 EGLGKEDCLIKRTLQAHIDYL 81
          EG GKEDCLI+RTLQAH DY+
Sbjct: 61 EGPGKEDCLIRRTLQAHTDYV 76

BLAST of MELO3C030339 vs. NCBI nr
Match: KGN62431.1 (hypothetical protein Csa_018781 [Cucumis sativus])

HSP 1 Score: 85.5 bits (210), Expect = 2.4e-13
Identity = 50/80 (62.50%), Postives = 58/80 (72.50%), Query Frame = 0

Query: 1  MSKKLAALFTIIAALVTIMSLIVIPSSEAARPIPSLFKPQNPIVSRELVADHNNEGISCE 60
          MSK LA+L T IAAL TIMSLI++PSSE  RPIPS        +  E   +HNN+G SCE
Sbjct: 1  MSKNLASLTTTIAALATIMSLIIVPSSE-GRPIPSF------ELIPEFATNHNNDG-SCE 60

Query: 61 GLGKEDCLIKRTLQAHIDYL 81
          G GKEDCLI+RTLQAH DY+
Sbjct: 61 GSGKEDCLIRRTLQAHTDYV 72

BLAST of MELO3C030339 vs. NCBI nr
Match: XP_031744017.1 (phytosulfokines-like [Cucumis sativus] >KAE8653241.1 hypothetical protein Csa_019762 [Cucumis sativus])

HSP 1 Score: 84.3 bits (207), Expect = 5.3e-13
Identity = 48/76 (63.16%), Postives = 59/76 (77.63%), Query Frame = 0

Query: 5  LAALFTIIAALVTIMSLIVIPSSEAARPIPSLFKPQNPIVSRELVADHNNEGISCEGLGK 64
          L AL T++AALVTIMSLI+IPSS+A     +  +P + IVS+ELVAD NN+   CEG GK
Sbjct: 6  LPALITLLAALVTIMSLIIIPSSQAT----TSCEPPHRIVSQELVADQNNDE-PCEGPGK 65

Query: 65 EDCLIKRTLQAHIDYL 81
          EDCLI+RTLQAH DY+
Sbjct: 66 EDCLIRRTLQAHTDYV 76

BLAST of MELO3C030339 vs. NCBI nr
Match: XP_031736089.1 (phytosulfokines-like [Cucumis sativus] >XP_031737677.1 phytosulfokines-like [Cucumis sativus] >KAE8653242.1 hypothetical protein Csa_019948 [Cucumis sativus] >KAE8653248.1 hypothetical protein Csa_019586 [Cucumis sativus])

HSP 1 Score: 82.8 bits (203), Expect = 1.5e-12
Identity = 50/81 (61.73%), Postives = 61/81 (75.31%), Query Frame = 0

Query: 1  MSK-KLAALFTIIAALVTIMSLIVIPSSEAARPIPSLFKPQNPIVSRELVADHNNEGISC 60
          MSK  L AL  ++AALVTIMSLI+IPSS+A     +  +P + IVS+ELVAD NN+   C
Sbjct: 1  MSKINLPALIILLAALVTIMSLIIIPSSQAT----TSCEPPHRIVSQELVADQNNDE-PC 60

Query: 61 EGLGKEDCLIKRTLQAHIDYL 81
          EG GKEDCLI+RTLQAH DY+
Sbjct: 61 EGPGKEDCLIRRTLQAHTDYV 76

BLAST of MELO3C030339 vs. ExPASy Swiss-Prot
Match: Q9FS10 (Phytosulfokines OS=Asparagus officinalis OX=4686 GN=PSK PE=1 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 7.2e-05
Identity = 28/72 (38.89%), Postives = 43/72 (59.72%), Query Frame = 0

Query: 15 LVTIMSLIVIPSSEAARPIPSLFKPQNPIVSRELVADHNNEGISCEGLGKEDCLIKRTLQ 74
          L+ I  L  +  ++AARP+      ++  V  E V D      +CEG+G+E+CL++RTL 
Sbjct: 8  LLLIALLFSLSLAQAARPLQPADSTKSVHVIPEKVHDE-----ACEGVGEEECLMRRTLT 67

Query: 75 AHIDYL--QFHN 85
          AH+DY+  Q HN
Sbjct: 68 AHVDYIYTQDHN 74

BLAST of MELO3C030339 vs. ExPASy TrEMBL
Match: A0A5A7V550 (Phytosulfokine-beta OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G001000 PE=3 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 3.5e-34
Identity = 79/80 (98.75%), Postives = 80/80 (100.00%), Query Frame = 0

Query: 1  MSKKLAALFTIIAALVTIMSLIVIPSSEAARPIPSLFKPQNPIVSRELVADHNNEGISCE 60
          MSKKLAALFTIIAALVTIMSLIVIPSSEAARPIPSLFKPQNPIVSRELVADHNNEGISCE
Sbjct: 1  MSKKLAALFTIIAALVTIMSLIVIPSSEAARPIPSLFKPQNPIVSRELVADHNNEGISCE 60

Query: 61 GLGKEDCLIKRTLQAHIDYL 81
          GLGKEDCLIKRTLQAHIDY+
Sbjct: 61 GLGKEDCLIKRTLQAHIDYV 80

BLAST of MELO3C030339 vs. ExPASy TrEMBL
Match: A0A0A0LR23 (Phytosulfokine-beta OS=Cucumis sativus OX=3659 GN=Csa_2G354080 PE=3 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.2e-13
Identity = 50/80 (62.50%), Postives = 58/80 (72.50%), Query Frame = 0

Query: 1  MSKKLAALFTIIAALVTIMSLIVIPSSEAARPIPSLFKPQNPIVSRELVADHNNEGISCE 60
          MSK LA+L T IAAL TIMSLI++PSSE  RPIPS        +  E   +HNN+G SCE
Sbjct: 1  MSKNLASLTTTIAALATIMSLIIVPSSE-GRPIPSF------ELIPEFATNHNNDG-SCE 60

Query: 61 GLGKEDCLIKRTLQAHIDYL 81
          G GKEDCLI+RTLQAH DY+
Sbjct: 61 GSGKEDCLIRRTLQAHTDYV 72

BLAST of MELO3C030339 vs. ExPASy TrEMBL
Match: A0A7J9CFK1 (Phytosulfokine-beta OS=Gossypium gossypioides OX=34282 GN=Gogos_004187 PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 4.4e-05
Identity = 40/82 (48.78%), Postives = 50/82 (60.98%), Query Frame = 0

Query: 4  KLAALFTIIAALVTIMSLIVIPSSEAARPIPSLFKPQNPIVSRELV-ADHNNEGISCEGL 63
          KL +LF  IAAL+    L     S AARP P+LF  Q+  V  E V AD N     CEG+
Sbjct: 3  KLCSLF--IAALLFNFML-----SYAARPEPTLFLTQHGGVEAEKVDADEN-----CEGI 62

Query: 64 GKEDCLIKRTLQAHIDYLQFHN 85
          GKE+CL++RTL AH+DY+   N
Sbjct: 63 GKEECLMRRTLAAHVDYIYTQN 72

BLAST of MELO3C030339 vs. ExPASy TrEMBL
Match: M5VYE0 (Phytosulfokine-beta OS=Prunus persica OX=3760 GN=PRUPE_8G150200 PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.7e-04
Identity = 38/85 (44.71%), Postives = 52/85 (61.18%), Query Frame = 0

Query: 1  MSKKLAALFTIIAALVTIMSLIVIPSSEAARPIPSLF-----KPQNPIVSRELVADHNNE 60
          M+ KL +L  I  AL+  +SL    SS AARP+PS F     K Q+ +   E+      E
Sbjct: 1  MASKLTSLCFI--ALILFLSL----SSSAARPLPSAFDANAMKAQDELKDVEVEKAMVEE 60

Query: 61 GISCEGLGKEDCLIKRTLQAHIDYL 81
            SCEG+G+E+CL++RTL AHIDY+
Sbjct: 61 --SCEGVGEEECLMRRTLAAHIDYI 77

BLAST of MELO3C030339 vs. ExPASy TrEMBL
Match: A0A7J8TE54 (Phytosulfokine-beta OS=Gossypium davidsonii OX=34287 GN=Godav_025953 PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.2e-04
Identity = 39/82 (47.56%), Postives = 49/82 (59.76%), Query Frame = 0

Query: 4  KLAALFTIIAALVTIMSLIVIPSSEAARPIPSLFKPQNPIVSRELV-ADHNNEGISCEGL 63
          KL +LF  IAAL+    L     S AARP P+L   Q+  V  E V AD N     CEG+
Sbjct: 3  KLCSLF--IAALLLNFML-----SYAARPEPTLSLTQHEGVEAEQVDADEN-----CEGI 62

Query: 64 GKEDCLIKRTLQAHIDYLQFHN 85
          GKE+CL++RTL AH+DY+   N
Sbjct: 63 GKEECLMRRTLAAHVDYIYTQN 72

BLAST of MELO3C030339 vs. TAIR 10
Match: AT4G37720.1 (phytosulfokine 6 precursor )

HSP 1 Score: 41.2 bits (95), Expect = 4.8e-04
Identity = 28/80 (35.00%), Postives = 44/80 (55.00%), Query Frame = 0

Query: 12 IAALVTIMSLIVIPS-SEAARPIPSLF-----KPQNPIVSRELVAD--HNNEGISCEGLG 71
          ++ L+TI  L+     + +ARP P+ F      P + + S E++    H   G SC+   
Sbjct: 4  LSTLITIALLLCATMLTCSARPEPAYFASFTTSPADTL-SLEMIESKLHEVAGESCDKED 63

Query: 72 KEDCLIKRTLQAHIDYLQFH 84
           EDCL++RTL AH+DY+  H
Sbjct: 64 DEDCLVRRTLTAHLDYIYTH 82

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0060965.17.1e-3498.75phytosulfokines-like [Cucumis melo var. makuwa][more]
XP_031739822.18.2e-1464.20phytosulfokines-like [Cucumis sativus] >KAE8653250.1 hypothetical protein Csa_02... [more]
KGN62431.12.4e-1362.50hypothetical protein Csa_018781 [Cucumis sativus][more]
XP_031744017.15.3e-1363.16phytosulfokines-like [Cucumis sativus] >KAE8653241.1 hypothetical protein Csa_01... [more]
XP_031736089.11.5e-1261.73phytosulfokines-like [Cucumis sativus] >XP_031737677.1 phytosulfokines-like [Cuc... [more]
Match NameE-valueIdentityDescription
Q9FS107.2e-0538.89Phytosulfokines OS=Asparagus officinalis OX=4686 GN=PSK PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A5A7V5503.5e-3498.75Phytosulfokine-beta OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G... [more]
A0A0A0LR231.2e-1362.50Phytosulfokine-beta OS=Cucumis sativus OX=3659 GN=Csa_2G354080 PE=3 SV=1[more]
A0A7J9CFK14.4e-0548.78Phytosulfokine-beta OS=Gossypium gossypioides OX=34282 GN=Gogos_004187 PE=3 SV=1[more]
M5VYE01.7e-0444.71Phytosulfokine-beta OS=Prunus persica OX=3760 GN=PRUPE_8G150200 PE=3 SV=1[more]
A0A7J8TE542.2e-0447.56Phytosulfokine-beta OS=Gossypium davidsonii OX=34287 GN=Godav_025953 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT4G37720.14.8e-0435.00phytosulfokine 6 precursor [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C030339.1MELO3C030339.1mRNA