MELO3C030306 (gene) Melon (DHL92) v4

Overview
NameMELO3C030306
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionDNA ligase
Locationchr03: 24954181 .. 24954525 (-)
RNA-Seq ExpressionMELO3C030306
SyntenyMELO3C030306
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCTCTCCTTCATTCTGCTGTTTCCACCCCTCCAACACCCCTAAAACATCCCCCTGTTCCTGGCTCAAATCCACCGCCCTTGAACTCTCTCACTTACTTCGCCGCTGCCGCTATTTCCTTGCTCGGGTTGCTCGTCGCCGGACAAACTACCTTGCCTCCGCTGACTTTTCCTACGATTCTTCCAGTTATGCCCTTAATTTCGACGACGATTGCCGTGACGACCATCAGTTCCCCTTCAGAGATTTCACGGCTAGATTCCCCCCGCCCCTCAAGGACCGTCTTCCGGCCGCTACCAAATTCGCCGGTTCTCATCATGAAATCCCCATATCCCCCTCTCGTTGA

mRNA sequence

ATGTTCTCTCCTTCATTCTGCTGTTTCCACCCCTCCAACACCCCTAAAACATCCCCCTGTTCCTGGCTCAAATCCACCGCCCTTGAACTCTCTCACTTACTTCGCCGCTGCCGCTATTTCCTTGCTCGGGTTGCTCGTCGCCGGACAAACTACCTTGCCTCCGCTGACTTTTCCTACGATTCTTCCAGTTATGCCCTTAATTTCGACGACGATTGCCGTGACGACCATCAGTTCCCCTTCAGAGATTTCACGGCTAGATTCCCCCCGCCCCTCAAGGACCGTCTTCCGGCCGCTACCAAATTCGCCGGTTCTCATCATGAAATCCCCATATCCCCCTCTCGTTGA

Coding sequence (CDS)

ATGTTCTCTCCTTCATTCTGCTGTTTCCACCCCTCCAACACCCCTAAAACATCCCCCTGTTCCTGGCTCAAATCCACCGCCCTTGAACTCTCTCACTTACTTCGCCGCTGCCGCTATTTCCTTGCTCGGGTTGCTCGTCGCCGGACAAACTACCTTGCCTCCGCTGACTTTTCCTACGATTCTTCCAGTTATGCCCTTAATTTCGACGACGATTGCCGTGACGACCATCAGTTCCCCTTCAGAGATTTCACGGCTAGATTCCCCCCGCCCCTCAAGGACCGTCTTCCGGCCGCTACCAAATTCGCCGGTTCTCATCATGAAATCCCCATATCCCCCTCTCGTTGA

Protein sequence

MFSPSFCCFHPSNTPKTSPCSWLKSTALELSHLLRRCRYFLARVARRRTNYLASADFSYDSSSYALNFDDDCRDDHQFPFRDFTARFPPPLKDRLPAATKFAGSHHEIPISPSR
Homology
BLAST of MELO3C030306 vs. NCBI nr
Match: XP_008445585.1 (PREDICTED: uncharacterized protein LOC103488565 [Cucumis melo])

HSP 1 Score: 241.1 bits (614), Expect = 4.6e-60
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0

Query: 1   MFSPSFCCFHPSNTPKTSPCSWLKSTALELSHLLRRCRYFLARVARRRTNYLASADFSYD 60
           MFSPSFCCFHPSNTPKTSPCSWLKSTALELSHLLRRCRYFLARVARRRTNYLASADFSYD
Sbjct: 1   MFSPSFCCFHPSNTPKTSPCSWLKSTALELSHLLRRCRYFLARVARRRTNYLASADFSYD 60

Query: 61  SSSYALNFDDDCRDDHQFPFRDFTARFPPPLKDRLPAATKFAGSHHEIPISPSR 115
           SSSYALNFDDDCRDDHQFPFRDFTARFPPPLKDRLPAATKFAGSHHEIPISPSR
Sbjct: 61  SSSYALNFDDDCRDDHQFPFRDFTARFPPPLKDRLPAATKFAGSHHEIPISPSR 114

BLAST of MELO3C030306 vs. NCBI nr
Match: XP_023546798.1 (uncharacterized protein LOC111805797 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 152.9 bits (385), Expect = 1.7e-33
Identity = 76/116 (65.52%), Postives = 87/116 (75.00%), Query Frame = 0

Query: 5   SFCCFH----------PSNTPKTSPCSWLKSTALELSHLLRRCRYFLARVARRRTNYLAS 64
           SFCCFH          PS +P TSPCSW KST  E   +L RCRY LAR+ARRR  YLAS
Sbjct: 18  SFCCFHGFQQDDFLDSPSKSPTTSPCSWFKSTVGEFRGILARCRYLLARIARRRKRYLAS 77

Query: 65  ADFSYDSSSYALNFDDDCRDDHQFPFRDFTARFPPPLKDRLPAATKFAGSHHEIPI 111
            DFSYDSSSYALNF+DDCR+D +FPFR+FTARFPPP+K+R+PAA KFAGS   I +
Sbjct: 78  VDFSYDSSSYALNFEDDCREDDEFPFRNFTARFPPPIKERVPAA-KFAGSEDGISV 132

BLAST of MELO3C030306 vs. NCBI nr
Match: XP_022997531.1 (uncharacterized protein LOC111492424 [Cucurbita maxima])

HSP 1 Score: 152.1 bits (383), Expect = 2.8e-33
Identity = 76/116 (65.52%), Postives = 85/116 (73.28%), Query Frame = 0

Query: 5   SFCCFH----------PSNTPKTSPCSWLKSTALELSHLLRRCRYFLARVARRRTNYLAS 64
           SFCCFH          PS +P  SPCSW KST  E   +L RCRY LAR+ARRR  YLAS
Sbjct: 18  SFCCFHGFQQDDFLDSPSKSPTKSPCSWFKSTVGEFRGILARCRYLLARIARRRKRYLAS 77

Query: 65  ADFSYDSSSYALNFDDDCRDDHQFPFRDFTARFPPPLKDRLPAATKFAGSHHEIPI 111
            DF+YDSSSYALNFDDDCR+D +FPFRDFTARFPPP+K+R PAA KFAGS   I +
Sbjct: 78  VDFTYDSSSYALNFDDDCREDDEFPFRDFTARFPPPIKERAPAA-KFAGSEDGISV 132

BLAST of MELO3C030306 vs. NCBI nr
Match: XP_022962228.1 (uncharacterized protein LOC111462741 [Cucurbita moschata] >KAG6598557.1 hypothetical protein SDJN03_08335, partial [Cucurbita argyrosperma subsp. sororia] >KAG7029495.1 hypothetical protein SDJN02_07834, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 150.6 bits (379), Expect = 8.2e-33
Identity = 75/116 (64.66%), Postives = 86/116 (74.14%), Query Frame = 0

Query: 5   SFCCFH----------PSNTPKTSPCSWLKSTALELSHLLRRCRYFLARVARRRTNYLAS 64
           SFCCFH          PS +P  SPCSW KST  E   +L RCRY LAR+ARRR  YLAS
Sbjct: 18  SFCCFHGFQQDDFLDSPSKSPTRSPCSWFKSTVGEFRGILARCRYLLARIARRRKRYLAS 77

Query: 65  ADFSYDSSSYALNFDDDCRDDHQFPFRDFTARFPPPLKDRLPAATKFAGSHHEIPI 111
            DFSYDSSSYALNF+DDCR+D +FPFR+FTARFPPP+K+R+PAA KFAGS   I +
Sbjct: 78  VDFSYDSSSYALNFEDDCREDDEFPFRNFTARFPPPIKERVPAA-KFAGSEDGISV 132

BLAST of MELO3C030306 vs. NCBI nr
Match: KAE8652207.1 (hypothetical protein Csa_022035, partial [Cucumis sativus])

HSP 1 Score: 146.4 bits (368), Expect = 1.5e-31
Identity = 72/84 (85.71%), Postives = 75/84 (89.29%), Query Frame = 0

Query: 1  MFSPSFCCFHPSNTPKTSPCSWLKSTALELSHLLRRCRYFLARVARRRTNYLASADFSYD 60
          MFSPSFCCFHPSNTPK+SP S LKSTAL LS LLRRCRYFLAR+ARRRTN L+SA FSYD
Sbjct: 1  MFSPSFCCFHPSNTPKSSPSSCLKSTALHLSRLLRRCRYFLARLARRRTNSLSSAHFSYD 60

Query: 61 SSSYALNFDDDCRDDHQFPFRDFT 85
          SSSYALNFDD   DDHQFPFRDFT
Sbjct: 61 SSSYALNFDDHSHDDHQFPFRDFT 84

BLAST of MELO3C030306 vs. ExPASy TrEMBL
Match: A0A1S3BDX7 (uncharacterized protein LOC103488565 OS=Cucumis melo OX=3656 GN=LOC103488565 PE=4 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 2.2e-60
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0

Query: 1   MFSPSFCCFHPSNTPKTSPCSWLKSTALELSHLLRRCRYFLARVARRRTNYLASADFSYD 60
           MFSPSFCCFHPSNTPKTSPCSWLKSTALELSHLLRRCRYFLARVARRRTNYLASADFSYD
Sbjct: 1   MFSPSFCCFHPSNTPKTSPCSWLKSTALELSHLLRRCRYFLARVARRRTNYLASADFSYD 60

Query: 61  SSSYALNFDDDCRDDHQFPFRDFTARFPPPLKDRLPAATKFAGSHHEIPISPSR 115
           SSSYALNFDDDCRDDHQFPFRDFTARFPPPLKDRLPAATKFAGSHHEIPISPSR
Sbjct: 61  SSSYALNFDDDCRDDHQFPFRDFTARFPPPLKDRLPAATKFAGSHHEIPISPSR 114

BLAST of MELO3C030306 vs. ExPASy TrEMBL
Match: A0A6J1K7R1 (uncharacterized protein LOC111492424 OS=Cucurbita maxima OX=3661 GN=LOC111492424 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 1.4e-33
Identity = 76/116 (65.52%), Postives = 85/116 (73.28%), Query Frame = 0

Query: 5   SFCCFH----------PSNTPKTSPCSWLKSTALELSHLLRRCRYFLARVARRRTNYLAS 64
           SFCCFH          PS +P  SPCSW KST  E   +L RCRY LAR+ARRR  YLAS
Sbjct: 18  SFCCFHGFQQDDFLDSPSKSPTKSPCSWFKSTVGEFRGILARCRYLLARIARRRKRYLAS 77

Query: 65  ADFSYDSSSYALNFDDDCRDDHQFPFRDFTARFPPPLKDRLPAATKFAGSHHEIPI 111
            DF+YDSSSYALNFDDDCR+D +FPFRDFTARFPPP+K+R PAA KFAGS   I +
Sbjct: 78  VDFTYDSSSYALNFDDDCREDDEFPFRDFTARFPPPIKERAPAA-KFAGSEDGISV 132

BLAST of MELO3C030306 vs. ExPASy TrEMBL
Match: A0A6J1HE78 (uncharacterized protein LOC111462741 OS=Cucurbita moschata OX=3662 GN=LOC111462741 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 4.0e-33
Identity = 75/116 (64.66%), Postives = 86/116 (74.14%), Query Frame = 0

Query: 5   SFCCFH----------PSNTPKTSPCSWLKSTALELSHLLRRCRYFLARVARRRTNYLAS 64
           SFCCFH          PS +P  SPCSW KST  E   +L RCRY LAR+ARRR  YLAS
Sbjct: 18  SFCCFHGFQQDDFLDSPSKSPTRSPCSWFKSTVGEFRGILARCRYLLARIARRRKRYLAS 77

Query: 65  ADFSYDSSSYALNFDDDCRDDHQFPFRDFTARFPPPLKDRLPAATKFAGSHHEIPI 111
            DFSYDSSSYALNF+DDCR+D +FPFR+FTARFPPP+K+R+PAA KFAGS   I +
Sbjct: 78  VDFSYDSSSYALNFEDDCREDDEFPFRNFTARFPPPIKERVPAA-KFAGSEDGISV 132

BLAST of MELO3C030306 vs. ExPASy TrEMBL
Match: A0A6J1BQU1 (uncharacterized protein LOC111004768 OS=Momordica charantia OX=3673 GN=LOC111004768 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.5e-19
Identity = 62/102 (60.78%), Postives = 69/102 (67.65%), Query Frame = 0

Query: 5   SFCCFHPSNTPKT-SPCSWLKSTALELSHLLRRCRYFLARVAR-RRTNYLASADFSYDSS 64
           S  CF  S+ P T SPCSW KSTA E   LL RCRY +AR+ R  R  Y AS DF+YDSS
Sbjct: 18  SIGCFRASDQPSTKSPCSWFKSTAAEFPDLLDRCRYLVARIGRGSRRRYHASPDFTYDSS 77

Query: 65  SYALNFDDDCRDDHQFPFRDFTARFPPPLKDRLPAATKFAGS 105
           SYALNF+DD R D +FP R+F AR P     RLPAA KFAGS
Sbjct: 78  SYALNFEDDSRYDDEFPLRNFAARLP-----RLPAA-KFAGS 113

BLAST of MELO3C030306 vs. ExPASy TrEMBL
Match: A0A6P3ZZP3 (uncharacterized protein LOC107421138 OS=Ziziphus jujuba OX=326968 GN=LOC107421138 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 3.3e-11
Identity = 44/97 (45.36%), Postives = 61/97 (62.89%), Query Frame = 0

Query: 12  SNTPKTSPCSWLKSTALELSHLLRRCRYFLARVARRRTNYLASADFSYDSSSYALNFDDD 71
           S++P +S  SWLKSTA +L  +  RCR  ++R+ + R +Y  S +FSYD SSYALNF+D+
Sbjct: 51  SSSPSSSYSSWLKSTAHDLPEIRDRCRNLISRIGKGRRHY-NSGEFSYDPSSYALNFEDE 110

Query: 72  CRDDHQFPFRDFTARFPPPLKDRLPAATKFAGSHHEI 109
            R + +FP RDF++R   P     P AT  A    EI
Sbjct: 111 SRYNDEFPLRDFSSRL--PASPSPPYATGSAAVRREI 144

BLAST of MELO3C030306 vs. TAIR 10
Match: AT5G11070.1 (unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 52.0 bits (123), Expect = 3.7e-07
Identity = 42/101 (41.58%), Postives = 50/101 (49.50%), Query Frame = 0

Query: 14  TPKTSPCSWLKSTALELSHLLRRCRYFLARV-ARRRTNYLA--------------SADFS 73
           TP+ SP  WLKSTA EL  L  RCR   +R+    R N  A                DFS
Sbjct: 48  TPR-SPYEWLKSTAQEL-ELRDRCRRVKSRIKVTCRNNNCAYNNCVHHHHHSQSYPGDFS 107

Query: 74  YDSSSYALNFDDDCRDDHQFPFRDFTARFPPPLKDRLPAAT 100
           YD  SYALNF+D+ R D    F +FTAR P     +  +AT
Sbjct: 108 YDPLSYALNFEDNVRADDDGSFPNFTARLPQSPVTKTRSAT 146

BLAST of MELO3C030306 vs. TAIR 10
Match: AT5G35090.1 (unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 45.1 bits (105), Expect = 4.5e-05
Identity = 26/57 (45.61%), Postives = 35/57 (61.40%), Query Frame = 0

Query: 54  SADFSYDSSSYALNFDDDCRDDH--QFPFRDFTARFPPPLKDRLPAATKFAGSHHEI 109
           +ADF YD SSYALNFD    DD+  +FP R+F+AR P       P++ K A S + +
Sbjct: 102 TADFHYDPSSYALNFDKGDEDDNIDRFPLRNFSARLP----HSPPSSAKAADSSYTV 154

BLAST of MELO3C030306 vs. TAIR 10
Match: AT5G14890.1 (NHL domain-containing protein )

HSP 1 Score: 42.0 bits (97), Expect = 3.8e-04
Identity = 23/47 (48.94%), Postives = 30/47 (63.83%), Query Frame = 0

Query: 57  FSYDSSSYALNFDDDCRDDH---QFPFRDFTARFPPPLKDRLPAATK 101
           F YDS SY+LNFDD  +  H   +FP+RD++ RF  P    LP +TK
Sbjct: 695 FRYDSWSYSLNFDDGKQTGHFEDEFPYRDYSMRFAAP---SLPVSTK 738

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_008445585.14.6e-60100.00PREDICTED: uncharacterized protein LOC103488565 [Cucumis melo][more]
XP_023546798.11.7e-3365.52uncharacterized protein LOC111805797 [Cucurbita pepo subsp. pepo][more]
XP_022997531.12.8e-3365.52uncharacterized protein LOC111492424 [Cucurbita maxima][more]
XP_022962228.18.2e-3364.66uncharacterized protein LOC111462741 [Cucurbita moschata] >KAG6598557.1 hypothet... [more]
KAE8652207.11.5e-3185.71hypothetical protein Csa_022035, partial [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A1S3BDX72.2e-60100.00uncharacterized protein LOC103488565 OS=Cucumis melo OX=3656 GN=LOC103488565 PE=... [more]
A0A6J1K7R11.4e-3365.52uncharacterized protein LOC111492424 OS=Cucurbita maxima OX=3661 GN=LOC111492424... [more]
A0A6J1HE784.0e-3364.66uncharacterized protein LOC111462741 OS=Cucurbita moschata OX=3662 GN=LOC1114627... [more]
A0A6J1BQU11.5e-1960.78uncharacterized protein LOC111004768 OS=Momordica charantia OX=3673 GN=LOC111004... [more]
A0A6P3ZZP33.3e-1145.36uncharacterized protein LOC107421138 OS=Ziziphus jujuba OX=326968 GN=LOC10742113... [more]
Match NameE-valueIdentityDescription
AT5G11070.13.7e-0741.58unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0... [more]
AT5G35090.14.5e-0545.61unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0... [more]
AT5G14890.13.8e-0448.94NHL domain-containing protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33168:SF61SUBFAMILY NOT NAMEDcoord: 17..91
NoneNo IPR availablePANTHERPTHR33168STRESS INDUCED PROTEIN-RELATEDcoord: 17..91

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C030306.1MELO3C030306.1mRNA