MELO3C030300.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C030300.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionUnknown protein
Locationchr03: 25306283 .. 25306672 (-)
RNA-Seq ExpressionMELO3C030300.jh1
SyntenyMELO3C030300.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCACTCAAGAAGATGCCTTGTTCTGCAATTCAACCACCTCCTTCCAAGATTCCCTGCTGGATATTTCATTCCACCACCGCTCCACGTTCTTCCTCGACGTGAAAAGCTCCGCCCTGTCCGCATTATTCACCAGATAATGCCCGTTAGGCAAATGAGAAAGATCAGCCAACGAGAACTCATCTCCGGCCAAATATCGACTCTCTCCCAGTCTCTGCTCGTACACATCAAGCACCTTCGACAGCTTCTCCTCGTTTTGCTTAATCGCCTTCTCATCCTGCGGCAACTTCATCCTCGGCGCAAACGCCAGTTGAAAAACAAGAATCGAGCTCGCGGGATTGAAGTTCTGCCCCTCCGCTTCAATCCATTGTTCGATCGAAGCTTTCCCTAA

mRNA sequence

ATGCACTCAAGAAGATGCCTTGTTCTGCAATTCAACCACCTCCTTCCAAGATTCCCTGCTGGATATTTCATTCCACCACCGCTCCACGTTCTTCCTCGACGTGAAAAGCTCCGCCCTGTCCGCATTATTCACCAGATAATGCCCGTTAGGCAAATGAGAAAGATCAGCCAACGAGAACTCATCTCCGGCCAAATATCGACTCTCTCCCAGTCTCTGCTCGTACACATCAAGCACCTTCGACAGCTTCTCCTCGTTTTGCTTAATCGCCTTCTCATCCTGCGGCAACTTCATCCTCGGCGCAAACGCCAGTTGAAAAACAAGAATCGAGCTCGCGGGATTGAAGTTCTGCCCCTCCGCTTCAATCCATTGTTCGATCGAAGCTTTCCCTAA

Coding sequence (CDS)

ATGCACTCAAGAAGATGCCTTGTTCTGCAATTCAACCACCTCCTTCCAAGATTCCCTGCTGGATATTTCATTCCACCACCGCTCCACGTTCTTCCTCGACGTGAAAAGCTCCGCCCTGTCCGCATTATTCACCAGATAATGCCCGTTAGGCAAATGAGAAAGATCAGCCAACGAGAACTCATCTCCGGCCAAATATCGACTCTCTCCCAGTCTCTGCTCGTACACATCAAGCACCTTCGACAGCTTCTCCTCGTTTTGCTTAATCGCCTTCTCATCCTGCGGCAACTTCATCCTCGGCGCAAACGCCAGTTGAAAAACAAGAATCGAGCTCGCGGGATTGAAGTTCTGCCCCTCCGCTTCAATCCATTGTTCGATCGAAGCTTTCCCTAA

Protein sequence

MHSRRCLVLQFNHLLPRFPAGYFIPPPLHVLPRREKLRPVRIIHQIMPVRQMRKISQRELISGQISTLSQSLLVHIKHLRQLLLVLLNRLLILRQLHPRRKRQLKNKNRARGIEVLPLRFNPLFDRSFP
Homology
BLAST of MELO3C030300.jh1 vs. NCBI nr
Match: KAB8090083.1 (hypothetical protein EE612_015154, partial [Oryza sativa] >BAS82174.1 Os03g0135150, partial [Oryza sativa Japonica Group])

HSP 1 Score: 67.0 bits (162), Expect = 4.33e-11
Identity = 43/109 (39.45%), Postives = 68/109 (62.39%), Query Frame = 0

Query: 20  AGYFIPPPLHVLPRREKLRPVRI--IHQIMPVRQMRKISQRELISGQISTLSQSLLVHIK 79
            G  + PP  VL   E+L   R   +  ++ VR++ ++ Q EL++G++  L Q L+VH++
Sbjct: 3   VGDLLVPPRDVLLGGEELLAPRRPRVDDVVGVREVGQVGQGELVAGEVLVLRQDLVVHVQ 62

Query: 80  HLRQLLLVLLNRLLILRQLHPRRKRQLKNKNRARGIEVLPLRFNPLFDR 126
           HL QL LVL +  L+ R +  RR+RQ++++ RAR +E L LR  PL DR
Sbjct: 63  HLLQLPLVLRDAGLVGRYVELRRERQVEHQLRARRVEALRLRLQPLLDR 111

BLAST of MELO3C030300.jh1 vs. NCBI nr
Match: RWW67474.1 (hypothetical protein BHE74_00025090, partial [Ensete ventricosum])

HSP 1 Score: 59.7 bits (143), Expect = 2.17e-08
Identity = 34/75 (45.33%), Postives = 45/75 (60.00%), Query Frame = 0

Query: 12 NHLLPRFPAGYFIPPPLHVLPRREKLRPVRIIHQIMPVRQMRKISQRELISGQISTLSQS 71
           HLLPR+     +PPP HV P  E+LR VR  + ++   ++ KI +REL+ GQ   L Q 
Sbjct: 5  EHLLPRWAGRDILPPPCHVPPGGEQLRLVRGANDVVGTGEVAKIRERELVPGQEPALRQP 64

Query: 72 LLVHIKHLRQLLLVL 86
           LVH +HL QL  VL
Sbjct: 65 PLVHAEHLSQLRFVL 79

BLAST of MELO3C030300.jh1 vs. NCBI nr
Match: RWW24232.1 (hypothetical protein GW17_00011496 [Ensete ventricosum])

HSP 1 Score: 60.1 bits (144), Expect = 2.66e-08
Identity = 36/84 (42.86%), Postives = 47/84 (55.95%), Query Frame = 0

Query: 3  SRRCLVLQFNHLLPRFPAGYFIPPPLHVLPRREKLRPVRIIHQIMPVRQMRKISQRELIS 62
          S R       HLLPR+     +PPP HV P  E+LR VR  + ++   ++ KI +REL+ 
Sbjct: 16 SSRRSTEHVEHLLPRWAGRDILPPPCHVPPGGEQLRLVRGANDVVGTGEVAKIRERELVP 75

Query: 63 GQISTLSQSLLVHIKHLRQLLLVL 86
          GQ   L Q  LVH +HL QL  VL
Sbjct: 76 GQEPALRQPPLVHAEHLSQLRFVL 99

BLAST of MELO3C030300.jh1 vs. NCBI nr
Match: RZS22785.1 (hypothetical protein BHM03_00055617 [Ensete ventricosum])

HSP 1 Score: 59.7 bits (143), Expect = 3.52e-08
Identity = 34/75 (45.33%), Postives = 45/75 (60.00%), Query Frame = 0

Query: 12 NHLLPRFPAGYFIPPPLHVLPRREKLRPVRIIHQIMPVRQMRKISQRELISGQISTLSQS 71
           HLLPR+     +PPP HV P  E+LR VR  + ++   ++ KI +REL+ GQ   L Q 
Sbjct: 22 EHLLPRWAGRDILPPPCHVPPGGEQLRLVRGANDVVGTGEVAKIRERELVPGQEPALRQP 81

Query: 72 LLVHIKHLRQLLLVL 86
           LVH +HL QL  VL
Sbjct: 82 PLVHAEHLSQLRFVL 96

BLAST of MELO3C030300.jh1 vs. NCBI nr
Match: ACN36255.1 (unknown [Zea mays])

HSP 1 Score: 59.7 bits (143), Expect = 1.51e-07
Identity = 44/119 (36.97%), Postives = 68/119 (57.14%), Query Frame = 0

Query: 7   LVLQFNHLLPRFPAGYFIPPPLHVLPRREKL-RPVRIIHQIMPVRQMRKISQRELISGQI 66
           L L  + L P    G  + PP HVL   E+L  PV  +  ++ V Q+ ++ Q E+++G++
Sbjct: 18  LPLHLHDLPPGVAGGDLVVPPGHVLSGGEELPAPVGGVDDVVGVWQVGEVGQCEVVAGEV 77

Query: 67  STLSQSLLVHIKHLRQLLLVLLNRLLI-LRQLHPRRKRQLKNKNRARGIEVLPLRFNPL 123
             L + ++V  +H  QLLLVL +  L+    L  RR+RQL+ + RAR +E L LR  PL
Sbjct: 78  LVLGEDVVVDAQHAVQLLLVLRDAGLVGPHVLEVRRERQLERQLRARRVEALRLRLQPL 136

BLAST of MELO3C030300.jh1 vs. ExPASy TrEMBL
Match: A0A0P0VSN9 (Os03g0135150 protein (Fragment) OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0135150 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.10e-11
Identity = 43/109 (39.45%), Postives = 68/109 (62.39%), Query Frame = 0

Query: 20  AGYFIPPPLHVLPRREKLRPVRI--IHQIMPVRQMRKISQRELISGQISTLSQSLLVHIK 79
            G  + PP  VL   E+L   R   +  ++ VR++ ++ Q EL++G++  L Q L+VH++
Sbjct: 3   VGDLLVPPRDVLLGGEELLAPRRPRVDDVVGVREVGQVGQGELVAGEVLVLRQDLVVHVQ 62

Query: 80  HLRQLLLVLLNRLLILRQLHPRRKRQLKNKNRARGIEVLPLRFNPLFDR 126
           HL QL LVL +  L+ R +  RR+RQ++++ RAR +E L LR  PL DR
Sbjct: 63  HLLQLPLVLRDAGLVGRYVELRRERQVEHQLRARRVEALRLRLQPLLDR 111

BLAST of MELO3C030300.jh1 vs. ExPASy TrEMBL
Match: A0A444FNN5 (Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=GW17_00011496 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.29e-08
Identity = 36/84 (42.86%), Postives = 47/84 (55.95%), Query Frame = 0

Query: 3  SRRCLVLQFNHLLPRFPAGYFIPPPLHVLPRREKLRPVRIIHQIMPVRQMRKISQRELIS 62
          S R       HLLPR+     +PPP HV P  E+LR VR  + ++   ++ KI +REL+ 
Sbjct: 16 SSRRSTEHVEHLLPRWAGRDILPPPCHVPPGGEQLRLVRGANDVVGTGEVAKIRERELVP 75

Query: 63 GQISTLSQSLLVHIKHLRQLLLVL 86
          GQ   L Q  LVH +HL QL  VL
Sbjct: 76 GQEPALRQPPLVHAEHLSQLRFVL 99

BLAST of MELO3C030300.jh1 vs. ExPASy TrEMBL
Match: C0PM39 (Uncharacterized protein OS=Zea mays OX=4577 PE=2 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 7.30e-08
Identity = 44/119 (36.97%), Postives = 68/119 (57.14%), Query Frame = 0

Query: 7   LVLQFNHLLPRFPAGYFIPPPLHVLPRREKL-RPVRIIHQIMPVRQMRKISQRELISGQI 66
           L L  + L P    G  + PP HVL   E+L  PV  +  ++ V Q+ ++ Q E+++G++
Sbjct: 18  LPLHLHDLPPGVAGGDLVVPPGHVLSGGEELPAPVGGVDDVVGVWQVGEVGQCEVVAGEV 77

Query: 67  STLSQSLLVHIKHLRQLLLVLLNRLLI-LRQLHPRRKRQLKNKNRARGIEVLPLRFNPL 123
             L + ++V  +H  QLLLVL +  L+    L  RR+RQL+ + RAR +E L LR  PL
Sbjct: 78  LVLGEDVVVDAQHAVQLLLVLRDAGLVGPHVLEVRRERQLERQLRARRVEALRLRLQPL 136

BLAST of MELO3C030300.jh1 vs. ExPASy TrEMBL
Match: C4J109 (Uncharacterized protein OS=Zea mays OX=4577 PE=2 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 4.07e-04
Identity = 31/82 (37.80%), Postives = 48/82 (58.54%), Query Frame = 0

Query: 9   LQFNHLLPRFPAGYFIPPPLHVLPRREKLRPVRIIHQIMPVRQMRKISQRELISGQISTL 68
           LQ   +LP   AG  +PPP  VL   E     R+  +++ V Q+R++   E+++GQ   L
Sbjct: 78  LQGLDVLPGVAAGDVVPPPADVLAGLEHAAGARVGDEVVRVGQVRQVGDGEVVAGQERGL 137

Query: 69  SQSLLVHIKHLRQLLLVLLNRL 90
            Q+LLV ++ L Q+LL LL +L
Sbjct: 138 LQALLVDVQQLLQVLLPLLEQL 159

BLAST of MELO3C030300.jh1 vs. ExPASy TrEMBL
Match: A0A427BCN4 (Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=B296_00002846 PE=4 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 6.02e-04
Identity = 31/79 (39.24%), Postives = 50/79 (63.29%), Query Frame = 0

Query: 49  VRQMRKISQRELISGQISTLSQSLLVHIKHLRQLLLVLLNRLLILRQLHPRRKRQLKNKN 108
           V ++R++ + E + G     +Q LLV ++H+ QLLL   + LL+L ++  RR+RQ++++ 
Sbjct: 103 VGKVRQVDEGEPVYGGELRFAQPLLVDVQHVVQLLLAPQDHLLLLLEVLERRERQIEDER 162

Query: 109 RARGIEVLPLRFNPLFDRS 127
           RA   EVL LR   L DRS
Sbjct: 163 RAGRFEVLSLRLQSLLDRS 181

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAB8090083.14.33e-1139.45hypothetical protein EE612_015154, partial [Oryza sativa] >BAS82174.1 Os03g01351... [more]
RWW67474.12.17e-0845.33hypothetical protein BHE74_00025090, partial [Ensete ventricosum][more]
RWW24232.12.66e-0842.86hypothetical protein GW17_00011496 [Ensete ventricosum][more]
RZS22785.13.52e-0845.33hypothetical protein BHM03_00055617 [Ensete ventricosum][more]
ACN36255.11.51e-0736.97unknown [Zea mays][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0P0VSN92.10e-1139.45Os03g0135150 protein (Fragment) OS=Oryza sativa subsp. japonica OX=39947 GN=Os03... [more]
A0A444FNN51.29e-0842.86Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=GW17_00011496 PE=4 SV=1[more]
C0PM397.30e-0836.97Uncharacterized protein OS=Zea mays OX=4577 PE=2 SV=1[more]
C4J1094.07e-0437.80Uncharacterized protein OS=Zea mays OX=4577 PE=2 SV=1[more]
A0A427BCN46.02e-0439.24Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=B296_00002846 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C030300.jh1.t1MELO3C030300.jh1.t1mRNA