MELO3C030261 (gene) Melon (DHL92) v4

Overview
NameMELO3C030261
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
Descriptionnucleosome/chromatin assembly factor group C5
Locationchr03: 20743482 .. 20746578 (+)
RNA-Seq ExpressionMELO3C030261
SyntenyMELO3C030261
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCTCCAAATGGCTTTAGGCAGGGGCAGATTTATTAAGAGGCCAGCGGGGACACGTGCCCCCCTCACATTATCGATTTTTGTATTTTAATATTAATTTTGAAGTGTCAAACTATAATATATATTAAACAATGCTTTATTTTTTTAAAATTTTGGTTTTGGTGTAGTGGCTATGCTTCCATTTTAACCACTGAGTTAAAGATTCAAATCCTATGAATTGCAATCATTTTTATTCCAAATATCAATATTTTTGTTTCCCAAATATCAAGTTTGTTCATAAATTGCACAAAATATATTTTATTCCAAACATCATTAATTTTCTTTTCCCAAATATCAAATATCTTTCCAAAGTTCAATAATTGTATTTCCCAAATATCAAAATTTTTCCTAAATTGTCAGAAAATATATTTTATTCCAAACATCATTAATTTTCTTTCCTTAAATATCAAATATCTTTCCAATTCTCCGATTTTTATTATGATAAGGTCCTGCATTTCATGGACATGATGAGATTGATGATTCAAAGAATCAAGGTAAATTTCTTGAACTATTGCAATGGTTGTGCAACCATAACAAGGATATTGAAGTCGCGACTTTGAAAAATGCTCCAAATAATTTGAAATTGATTGCACCTGATATCTAAAAAGATATAGTAAACTGCATTGCAACAGAAATTGTTAATATAGTTATAAGAGATGTAAGTGACAAACAATTTTCTATCTTGATAGACGAATCAAAAGATATATCTTCAAAGGAGCAGAAATCAGTTGTATTATGATATGTGGATGAAGGTCGTGTGATTGAACGATTTATTGGAATCATCCATGTCAATAATACAAGTGCCCAATCACTTAAGGAAGCTATTGATGGTTTTTTTCTCTCAACATGGGTTAAGTATTGCTAATTTGCGAGGACAAGGATATGATGGAGTAAGTAATATGCAAGGTGAGTTCCATGGCTTGAAAGCACTTATTTTGAAAGAAAATGAATGTGCTTTTTACATTCATTGTTTTGCTCATCAACTTCAATTAGCTCTTGTAAATACTGCAAAAGATCATGTGGAAATTGCCGATCTTTTTTTTTTTGCTACAAATGTAGTGAATGTTATTGGAGCATCAGCAAAACATCGAGATATTCTTCGAGAGAAACATAGCATTGAAATACAACGTATAACATTGCCCTAAATTTATGTTATTGGGTTTTAGCGTTTTATTTGAATTTAATTAGGTTTTTGGATTCATGGGTTTGGATAGAATGCTTCTTGGGGTAATGGGACATTCCTTCATGTATTCTTTATATTCCTTCCTCTAATGATTGATGATATTTCTCTTATATAAGAAGATTGTGAAGAAGCACGCTCACCATTTGTGAAGAAGTACAAGACTGTCATACACCCTGGTGAGGTATGTCTTTCAATTTCTCAAACAATGAAGTATAAAACATATGAAAACATGATATAGTGAAGCTCATCTTCATATAAGAAATCTATTACTGTGAACATTATGCAATTTCTCAAACTTTTTAATATATTTAGTTGTTGATTCTTGATATTAATACAACTTTGTTGATTTTCTTAAGTTTCTAGTTTGTTGGTTTTTCAAGTTTGTAGCTTAGTTTTAGCTTTATTCATGTGTATCAAGAATCATATTGACTTTTATGTAGAGTTTTATGTTAAAATATGCTATAGTGCATATTCATTCCATAATTCAAATCCGATAATAACAAGGAAGCATGGAAGATACATTTTGTTTTTTATCCAATGGAAATTAATGTAGAATGGCTTGATAAAAAAATTTGGGGCACGAAAATGTTGACATTTTGTAGGATTTTGTTAAATTAATGTTATTTTGCATATTGGGTTAGTAAAATATTATTCTCAGTGGTGTTAATCCTTTTTGGATTTTGAAGGTTAGTATCCTCCCGTGCATTTGGATTTACTATTTTTAGTCCATGGTGCTAATGTAATAACCTTACTTGTAGGTTTAGTATCCTTTTTTATGAAAGATTTTGCACGATCGAACTAGCTCTACTATAAGTTTATGATATATTTTAGAATTTTAGCAGTGTAGTTTGCTTGTGTATATAGATCCTTTCACTTTGATTTTTTGATATGTGTTATTGGAGTTTTAGGAGGATCATATTCGTCAATAACACAGTAGCTTGCGTGGAACATGTAATTAAGTACGTTCTCTTAGTTATTGAATCTATCTTTATATTCTTCACTCTTGGTACATATTATATTTAAAGACTGTTTTTAATGATTTAGTCTTGCAAACCTTTGCATGTTGGTTGGAAAGGACAATATTGGCTGTCAAGTTCCTTGTTTATATATATATATATATATATATATATATATATATTTAAGTTTATAAACTTATGCGTCATAATAATGCTCTTTAAGCACGTCAAGATTGTTCATTTCCTTCTAAGAGTATGGAACTTGTCAATTTTTCTAGGTTTGGTCTTGCTACAACAATGGGGGATTTTTAGAGGGTCAAAGTTGAACATTGAAACTATCGAAACACCCTTTTTGTTTTTTTTTAATACTTAAATTTTTAGTCCAATATCTTTTCTTTTTGCTTTTGCTAGGTTGACAAAGGTCTTAACAAGGCAAAAGGGAATCTTATGGCATTCTATAAGGTATGTACTCAATCATGTTATGATTGATAGGCAAATGATTTTATTTTTACCCATAAGTTGTTTCATTTCATGTTTTGGTTTTTAGGCACAGTATAATATTGATCAAGCATTGCAAAAAGATTCTTCCTTTAGAAGATGGGTGGGTTATGGGATCATGTTATTTTTATTTGTTTTTAGTATGCACATTTGATCATGAAGTGTTGTTGAAGTGTATATGTAATTTAGCTTAGTTTGTGGGCTGAATTTAGCTAAGCTTATAAGTTATTATTCTTGAAGTGTGTATGTGCTCTATGTTGTTGAAGTGTGTTGTTCATCATGAAGTGAATGTGATGTGTTTATGTGGGTGAATGTGTTGTCTTGTTGAATCATTTTTTTTCCTTTTCTTTTCTTATTAGGTTTTGCCACAATCCATTGGAGCAATGAAGCTATATTTACGCCAATTAGTTGATGTATAG

mRNA sequence

ATGGATCTCCAAATGGCTTTAGGCAGGGGCAGATTTATTAAGAGGCCAGCGGGGACACATTGTGAAGAAGCACGCTCACCATTTGTGAAGAAGTACAAGACTGTCATACACCCTGGTGAGTGTAGTTTGCTTGTGAGGATCATATTCGTCAATAACACAGTAGCTTGCGTGGAACATGCACAGTATAATATTGATCAAGCATTGCAAAAAGATTCTTCCTTTAGAAGATGGGTTTTGCCACAATCCATTGGAGCAATGAAGCTATATTTACGCCAATTAGTTGATGTATAG

Coding sequence (CDS)

ATGGATCTCCAAATGGCTTTAGGCAGGGGCAGATTTATTAAGAGGCCAGCGGGGACACATTGTGAAGAAGCACGCTCACCATTTGTGAAGAAGTACAAGACTGTCATACACCCTGGTGAGTGTAGTTTGCTTGTGAGGATCATATTCGTCAATAACACAGTAGCTTGCGTGGAACATGCACAGTATAATATTGATCAAGCATTGCAAAAAGATTCTTCCTTTAGAAGATGGGTTTTGCCACAATCCATTGGAGCAATGAAGCTATATTTACGCCAATTAGTTGATGTATAG

Protein sequence

MDLQMALGRGRFIKRPAGTHCEEARSPFVKKYKTVIHPGECSLLVRIIFVNNTVACVEHAQYNIDQALQKDSSFRRWVLPQSIGAMKLYLRQLVDV
Homology
[Close]
BLAST of MELO3C030261 vs. NCBI nr
Match: KAA0049668.1 (protein spinster-like [Cucumis melo var. makuwa])

HSP 1 Score: 73.6 bits (179), Expect = 1.1e-09
Identity = 35/37 (94.59%), Postives = 36/37 (97.30%), Query Frame = 0 

Query: 60  AQYNIDQALQKDSSFRRWVLPQSIGAMKLYLRQLVDV 97
           AQYNIDQALQKD+SFRRWVLPQSIGAMK YLRQLVDV
Sbjct: 657 AQYNIDQALQKDTSFRRWVLPQSIGAMKPYLRQLVDV 693

[Close]
BLAST of MELO3C030261 vs. ExPASy TrEMBL
Match: A0A5A7U351 (Protein spinster-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold76G00030 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 5.2e-10
Identity = 35/37 (94.59%), Postives = 36/37 (97.30%), Query Frame = 0 

Query: 60  AQYNIDQALQKDSSFRRWVLPQSIGAMKLYLRQLVDV 97
           AQYNIDQALQKD+SFRRWVLPQSIGAMK YLRQLVDV
Sbjct: 657 AQYNIDQALQKDTSFRRWVLPQSIGAMKPYLRQLVDV 693

[Close]
BLAST of MELO3C030261 vs. TAIR 10
Match: AT2G19520.1 (Transducin family protein / WD-40 repeat family protein )

HSP 1 Score: 43.9 bits (102), Expect = 8.5e-05
Identity = 18/19 (94.74%), Postives = 19/19 (100.00%), Query Frame = 0 

Query: 22  EEARSPFVKKYKTVIHPGE 41
           EEARSPFVKKYKT+IHPGE
Sbjct: 148 EEARSPFVKKYKTIIHPGE 166

[Close]
BLAST of MELO3C030261 vs. TAIR 10
Match: AT4G29730.1 (nucleosome/chromatin assembly factor group C5 )

HSP 1 Score: 40.4 bits (93), Expect = 9.4e-04
Identity = 16/19 (84.21%), Postives = 18/19 (94.74%), Query Frame = 0 

Query: 22  EEARSPFVKKYKTVIHPGE 41
           E+A SPFVKKYKT+IHPGE
Sbjct: 128 EKAHSPFVKKYKTIIHPGE 146

The following BLAST results are available for this feature:
BLAST of MELO3C030261 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0049668.11.1e-0994.59protein spinster-like [Cucumis melo var. makuwa][more]
BLAST of MELO3C030261 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C030261 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7U3515.2e-1094.59Protein spinster-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold76... [more]
BLAST of MELO3C030261 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G19520.18.5e-0594.74Transducin family protein / WD-40 repeat family protein [more]
AT4G29730.19.4e-0484.21nucleosome/chromatin assembly factor group C5 [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C030261.1MELO3C030261.1mRNA