MELO3C030247.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C030247.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionProtein FAR-RED ELONGATED HYPOCOTYL 3-like
Locationchr03: 20268026 .. 20269170 (+)
RNA-Seq ExpressionMELO3C030247.jh1
SyntenyMELO3C030247.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATCGAACAATTACCTTAGTTTTAACGTGTCCAAGATTACAGTTAATGAACATATGTGCTATAAAGAATTGTACACTAGCCTTAGATCCAAGTTAGGCAGTTTTATTGATATGAACAATATTGATATATACCTTTGCCTAGAATCTATAGAATGTGTTAATAAGGATTTTGTTATAACAAATGATAATGATGTTAAATGGGTTTACCATATAATAACATCAAATGTTGAGCGACATATTGCTCTTATTGTTCATTCTGTTGGCCCTTTTATCGATTTGTTTGGGTCTGCCGTCCTCAAGTTGTTTTGAAACTGAAATCCATGATGATGGGGTCTTTTTTCTTAAAACATAGATATCTCTAAGGTAGATTCCAACTTTGCACTGAAAATTCATGACATGTTTTCAACCAAATCTTTATTCAAACAGTATGTACAAGTCATTGCTATTAGAGACAATTTTCAATACGTTACTGTGAAATCAAAACATTGATTTTGCAATGCGTAATTGAAGATTGCAAATGGTCCTTGCATGCTTCTTGTTGTATTCATGAGGATATGATATTATGGATTCTTACTAGGTTTGATTCTGAATATACATGTTCAGTAGATGTTTAATTAACAGATCATATATAAGTCACCTTTACTGTTATCAAGGGCCTAATTAAGAACAAAATAACTTTAGCTAGTTCTAAATTGTCAACTCCCAAAGATATAGTTCATTACATTCATGCTAAACATGGTTTAAGCATATCTTACCAAAAAGCATGGCATGCACGTGAAGCGACGTTGGATGAAATTCGAGGATCTCTAAAGGACTCCTACAAGATGATACCCAAAGTTGCATACATAATTTGCTTAAATTTCATATAATACCATATTCATATATGTAATTATTTTTTCGTCATTCTTTCAATACCATTTTTCTTCATATATTTACATATTTTTCATGTTTATAGGTTCTATTGTTGAATACAAAGTTGATGCCGATGATAGATTTCTTTACTTCTTCATGCCATTATCTGCTTCCATTTCTGGTAAGCAACATTGTCGTCCAGTCATTTCTATTGATGGAACAAATCTGAAGAATAAGTACAGTGGTAGTCTTTTATCTGCTTCAACACCTGATGCCAATGTAACACCCTAA

mRNA sequence

ATGAATCGAACAATTACCTTAGTTTTAACGTGTCCAAGATTACAGTTAATGAACATATGTGCTATAAAGAATTGTACACTAGCCTTAGATCCAAGTTCTATTGTTGAATACAAAGTTGATGCCGATGATAGATTTCTTTACTTCTTCATGCCATTATCTGCTTCCATTTCTGGTAAGCAACATTGTCGTCCAGTCATTTCTATTGATGGAACAAATCTGAAGAATAAGTACAGTGGTAGTCTTTTATCTGCTTCAACACCTGATGCCAATGTAACACCCTAA

Coding sequence (CDS)

ATGAATCGAACAATTACCTTAGTTTTAACGTGTCCAAGATTACAGTTAATGAACATATGTGCTATAAAGAATTGTACACTAGCCTTAGATCCAAGTTCTATTGTTGAATACAAAGTTGATGCCGATGATAGATTTCTTTACTTCTTCATGCCATTATCTGCTTCCATTTCTGGTAAGCAACATTGTCGTCCAGTCATTTCTATTGATGGAACAAATCTGAAGAATAAGTACAGTGGTAGTCTTTTATCTGCTTCAACACCTGATGCCAATGTAACACCCTAA

Protein sequence

MNRTITLVLTCPRLQLMNICAIKNCTLALDPSSIVEYKVDADDRFLYFFMPLSASISGKQHCRPVISIDGTNLKNKYSGSLLSASTPDANVTP
Homology
BLAST of MELO3C030247.jh1 vs. NCBI nr
Match: KAA0066093.1 (protein FAR-RED ELONGATED HYPOCOTYL 3-like [Cucumis melo var. makuwa] >TYJ99803.1 protein FAR-RED ELONGATED HYPOCOTYL 3-like [Cucumis melo var. makuwa])

HSP 1 Score: 102 bits (253), Expect = 4.32e-26
Identity = 49/61 (80.33%), Postives = 53/61 (86.89%), Query Frame = 0

Query: 30 DPSSIVEYKVDADDRFLYFFMPLSASISGKQHCRPVISIDGTNLKNKYSGSLLSASTPDA 89
          +P S+VEYKVD D RFLYFFM LS SISG QH RPVISIDGT+LKNKY G+LLSASTPDA
Sbjct: 13 NPGSVVEYKVDVDSRFLYFFMALSTSISGWQHYRPVISIDGTSLKNKYDGTLLSASTPDA 72

BLAST of MELO3C030247.jh1 vs. NCBI nr
Match: KAA0065298.1 (protein FAR1-RELATED SEQUENCE 3-like [Cucumis melo var. makuwa] >TYK24165.1 protein FAR1-RELATED SEQUENCE 3-like [Cucumis melo var. makuwa])

HSP 1 Score: 105 bits (263), Expect = 9.20e-26
Identity = 50/61 (81.97%), Postives = 55/61 (90.16%), Query Frame = 0

Query: 30 DPSSIVEYKVDADDRFLYFFMPLSASISGKQHCRPVISIDGTNLKNKYSGSLLSASTPDA 89
          +P S+VEYKVDA+DRFLY FM LS SISG QHCRPVISIDGT+LKNKY G+LLSASTPDA
Sbjct: 13 NPGSVVEYKVDANDRFLYLFMTLSTSISGWQHCRPVISIDGTSLKNKYGGTLLSASTPDA 72

BLAST of MELO3C030247.jh1 vs. NCBI nr
Match: KAA0051047.1 (protein FAR1-RELATED SEQUENCE 3-like [Cucumis melo var. makuwa] >KAA0054885.1 protein FAR1-RELATED SEQUENCE 3-like [Cucumis melo var. makuwa] >TYK08704.1 protein FAR1-RELATED SEQUENCE 3-like [Cucumis melo var. makuwa])

HSP 1 Score: 99.4 bits (246), Expect = 1.69e-24
Identity = 47/58 (81.03%), Postives = 52/58 (89.66%), Query Frame = 0

Query: 33 SIVEYKVDADDRFLYFFMPLSASISGKQHCRPVISIDGTNLKNKYSGSLLSASTPDAN 90
          S++EYKVDAD RFLYFF+ LSASISG QHCRPVI IDGT+LKNKY G+LL ASTPDAN
Sbjct: 16 SVIEYKVDADGRFLYFFIALSASISGWQHCRPVIFIDGTSLKNKYGGTLLFASTPDAN 73

BLAST of MELO3C030247.jh1 vs. NCBI nr
Match: XP_008463665.1 (PREDICTED: uncharacterized protein LOC103501761 [Cucumis melo])

HSP 1 Score: 102 bits (253), Expect = 2.51e-24
Identity = 49/58 (84.48%), Postives = 52/58 (89.66%), Query Frame = 0

Query: 33  SIVEYKVDADDRFLYFFMPLSASISGKQHCRPVISIDGTNLKNKYSGSLLSASTPDAN 90
           S+VEYKVD D RFLYFFM LSASISG QHCRPVISIDGT+LKNKY  +LLSASTPDAN
Sbjct: 152 SVVEYKVDTDSRFLYFFMSLSASISGWQHCRPVISIDGTSLKNKYDDTLLSASTPDAN 209

BLAST of MELO3C030247.jh1 vs. NCBI nr
Match: KAA0037417.1 (protein FAR-RED ELONGATED HYPOCOTYL 3-like [Cucumis melo var. makuwa])

HSP 1 Score: 100 bits (250), Expect = 3.24e-24
Identity = 49/57 (85.96%), Postives = 52/57 (91.23%), Query Frame = 0

Query: 34  IVEYKVDADDRFLYFFMPLSASISGKQHCRPVISIDGTNLKNKYSGSLLSASTPDAN 90
           +VEYKV AD RFLYFFM LSASISG QHCRPVISIDGT+LKNKY G+LLSASTPDAN
Sbjct: 125 VVEYKVYADGRFLYFFMALSASISGWQHCRPVISIDGTSLKNKYGGTLLSASTPDAN 181

BLAST of MELO3C030247.jh1 vs. ExPASy TrEMBL
Match: A0A5A7VD35 (Protein FAR-RED ELONGATED HYPOCOTYL 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold446G00010 PE=4 SV=1)

HSP 1 Score: 102 bits (253), Expect = 2.09e-26
Identity = 49/61 (80.33%), Postives = 53/61 (86.89%), Query Frame = 0

Query: 30 DPSSIVEYKVDADDRFLYFFMPLSASISGKQHCRPVISIDGTNLKNKYSGSLLSASTPDA 89
          +P S+VEYKVD D RFLYFFM LS SISG QH RPVISIDGT+LKNKY G+LLSASTPDA
Sbjct: 13 NPGSVVEYKVDVDSRFLYFFMALSTSISGWQHYRPVISIDGTSLKNKYDGTLLSASTPDA 72

BLAST of MELO3C030247.jh1 vs. ExPASy TrEMBL
Match: A0A5A7VCD5 (Protein FAR1-RELATED SEQUENCE 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1425G00010 PE=4 SV=1)

HSP 1 Score: 105 bits (263), Expect = 4.45e-26
Identity = 50/61 (81.97%), Postives = 55/61 (90.16%), Query Frame = 0

Query: 30 DPSSIVEYKVDADDRFLYFFMPLSASISGKQHCRPVISIDGTNLKNKYSGSLLSASTPDA 89
          +P S+VEYKVDA+DRFLY FM LS SISG QHCRPVISIDGT+LKNKY G+LLSASTPDA
Sbjct: 13 NPGSVVEYKVDANDRFLYLFMTLSTSISGWQHCRPVISIDGTSLKNKYGGTLLSASTPDA 72

BLAST of MELO3C030247.jh1 vs. ExPASy TrEMBL
Match: A0A5A7U9G2 (Protein FAR1-RELATED SEQUENCE 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold75709G00010 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 8.16e-25
Identity = 47/58 (81.03%), Postives = 52/58 (89.66%), Query Frame = 0

Query: 33 SIVEYKVDADDRFLYFFMPLSASISGKQHCRPVISIDGTNLKNKYSGSLLSASTPDAN 90
          S++EYKVDAD RFLYFF+ LSASISG QHCRPVI IDGT+LKNKY G+LL ASTPDAN
Sbjct: 16 SVIEYKVDADGRFLYFFIALSASISGWQHCRPVIFIDGTSLKNKYGGTLLFASTPDAN 73

BLAST of MELO3C030247.jh1 vs. ExPASy TrEMBL
Match: A0A1S3CJS8 (uncharacterized protein LOC103501761 OS=Cucumis melo OX=3656 GN=LOC103501761 PE=4 SV=1)

HSP 1 Score: 102 bits (253), Expect = 1.22e-24
Identity = 49/58 (84.48%), Postives = 52/58 (89.66%), Query Frame = 0

Query: 33  SIVEYKVDADDRFLYFFMPLSASISGKQHCRPVISIDGTNLKNKYSGSLLSASTPDAN 90
           S+VEYKVD D RFLYFFM LSASISG QHCRPVISIDGT+LKNKY  +LLSASTPDAN
Sbjct: 152 SVVEYKVDTDSRFLYFFMSLSASISGWQHCRPVISIDGTSLKNKYDDTLLSASTPDAN 209

BLAST of MELO3C030247.jh1 vs. ExPASy TrEMBL
Match: A0A5A7T779 (Protein FAR-RED ELONGATED HYPOCOTYL 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold278G001290 PE=4 SV=1)

HSP 1 Score: 100 bits (250), Expect = 1.57e-24
Identity = 49/57 (85.96%), Postives = 52/57 (91.23%), Query Frame = 0

Query: 34  IVEYKVDADDRFLYFFMPLSASISGKQHCRPVISIDGTNLKNKYSGSLLSASTPDAN 90
           +VEYKV AD RFLYFFM LSASISG QHCRPVISIDGT+LKNKY G+LLSASTPDAN
Sbjct: 125 VVEYKVYADGRFLYFFMALSASISGWQHCRPVISIDGTSLKNKYGGTLLSASTPDAN 181

BLAST of MELO3C030247.jh1 vs. TAIR 10
Match: AT1G49920.1 (MuDR family transposase )

HSP 1 Score: 42.4 bits (98), Expect = 2.4e-04
Identity = 22/45 (48.89%), Postives = 25/45 (55.56%), Query Frame = 0

Query: 45  FLYFFMPLSASISGKQHCRPVISIDGTNLKNKYSGSLLSASTPDA 90
           F   F   S SI G QHCRP+I +D  NL  KY   L+ AS  DA
Sbjct: 361 FRGLFWAFSQSIQGFQHCRPLIVVDTKNLGGKYKMKLMIASAFDA 405

BLAST of MELO3C030247.jh1 vs. TAIR 10
Match: AT1G64260.1 (MuDR family transposase )

HSP 1 Score: 40.4 bits (93), Expect = 9.1e-04
Identity = 20/41 (48.78%), Postives = 24/41 (58.54%), Query Frame = 0

Query: 49  FMPLSASISGKQHCRPVISIDGTNLKNKYSGSLLSASTPDA 90
           F   S SI G QHCRP+I +D  +L  KY   L+ AS  DA
Sbjct: 362 FWSFSQSIEGFQHCRPLIVVDTKSLNGKYQLKLMIASGVDA 402

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0066093.14.32e-2680.33protein FAR-RED ELONGATED HYPOCOTYL 3-like [Cucumis melo var. makuwa] >TYJ99803.... [more]
KAA0065298.19.20e-2681.97protein FAR1-RELATED SEQUENCE 3-like [Cucumis melo var. makuwa] >TYK24165.1 prot... [more]
KAA0051047.11.69e-2481.03protein FAR1-RELATED SEQUENCE 3-like [Cucumis melo var. makuwa] >KAA0054885.1 pr... [more]
XP_008463665.12.51e-2484.48PREDICTED: uncharacterized protein LOC103501761 [Cucumis melo][more]
KAA0037417.13.24e-2485.96protein FAR-RED ELONGATED HYPOCOTYL 3-like [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7VD352.09e-2680.33Protein FAR-RED ELONGATED HYPOCOTYL 3-like OS=Cucumis melo var. makuwa OX=119469... [more]
A0A5A7VCD54.45e-2681.97Protein FAR1-RELATED SEQUENCE 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5A7U9G28.16e-2581.03Protein FAR1-RELATED SEQUENCE 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A1S3CJS81.22e-2484.48uncharacterized protein LOC103501761 OS=Cucumis melo OX=3656 GN=LOC103501761 PE=... [more]
A0A5A7T7791.57e-2485.96Protein FAR-RED ELONGATED HYPOCOTYL 3-like OS=Cucumis melo var. makuwa OX=119469... [more]
Match NameE-valueIdentityDescription
AT1G49920.12.4e-0448.89MuDR family transposase [more]
AT1G64260.19.1e-0448.78MuDR family transposase [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C030247.jh1.t1MELO3C030247.jh1.t1mRNA