MELO3C030226.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C030226.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase isoform X2
Location	chr03: 18402797 .. 18403859 (+)
RNA-Seq Expression	MELO3C030226.jh1
Synteny	MELO3C030226.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTCTCTTTTCCCCCCAAATTTTGTAAAAAAGCCCCAACTTCCTCTCACCAACCAGTCGCAGCGTTCATCTCTTTCGTATGTTCGCAAGCTGCTGCTCAAGCGAAGTTGCGTTCGTTTGCCGCCGTTCACAAGTTCGTCGCAAGCCACAAGTTCGCACAAGCCACCGCCGCTTAAACGAAGTTGCGTTTGTCCACCGCTTGCCAGTGAACTTCCGTTCATCTGTCGCTCAAGCCGTCGTCATCTATTTGTCTGCTCGTAACGTCCGCCACCAGTTCGATCGACAATCCAATCCGCCGTTTACAAGCCACCGCCGCCGTTTCTGCCCTATATCAGTCCAGTCCGCCGCCATCAACAGGTTATTAGCTTATTGTTTATTTCTTTATTGTTTTAGTCTACACATTTAACATGATATGCACTTCTTTTTGTTGGGAAAGTTTTATTCTACACATTTAACATAATCTGCACTTTTTTTGTTGGAAAATTCATTAATTAGATAAAATCATTATGGAATCTAGATCTATGCTTACTGTTGATTATTTGGTTATTTCTGTTAGATTTCCCCAAATGTTGGTACGATGAAATTGTGAAGGGAGTTTCTTCCGACCTCAAGAAGGTTGGCTACAACCCATCCTTTTCAACTAATTTAGAAGTGCAATCTTGTATATAATCATTTATATTTTAATATTGGAAACCGACCCTTTTTCACATAGGAACATGAGTTTAAAGATGAAGATGTTGTTTATATCATTAAAAAGGTATGATTCCTTTAAATATTTGTATTGCTTTTCCAATTGATTGAAAATCATTAAATGTGAATGCCTTTACGATCATGAGTTTAGCTTAGTTTTTTTGTTGGATTTTGTTGGTTAATTTCTTTGAAACTTATTTCTATGATGGATATATAGTTTGAGTTTTCCAACTAGTTTATTGGTTTTCTTATTAAAGCATTGCACCATTTTTTGTTTCCCATTAGTTCTATTTTCTGCTAATTTGGTTGTTTATAGTTTATGCATATATGGTAATAGTTTGGTTGTAATTGACAGGGCTAGGAAGAGACAATAA

mRNA sequence

TTTCTCTTTTCCCCCCAAATTTTGTAAAAAAGCCCCAACTTCCTCTCACCAACCAGTCGCAGCGTTCATCTCTTTCGTATGTTCGCAAGCTGCTGCTCAAGCGAAGTTGCGTTCGTTTGCCGCCGTTCACAAGTTCGTCGCAAGCCACAAGTTCGCACAAGCCACCGCCGCTTAAACGAAGTTGCGTTTGTCCACCGCTTGCCAGTGAACTTCCGTTCATCTGTCGCTCAAGCCGTCGTCATCTATTTGTCTGCTCGTAACGTCCGCCACCAGTTCGATCGACAATCCAATCCGCCGTTTACAAGCCACCGCCGCCGTTTCTGCCCTATATCAGTCCAGTCCGCCGCCATCAACAGTTTATGCATATATGGTAATAGTTTGGTTGTAATTGACAGGGCTAGGAAGAGACAATAA

Coding sequence (CDS)

ATGTTCGCAAGCTGCTGCTCAAGCGAAGTTGCGTTCGTTTGCCGCCGTTCACAAGTTCGTCGCAAGCCACAAGTTCGCACAAGCCACCGCCGCTTAAACGAAGTTGCGTTTGTCCACCGCTTGCCAGTGAACTTCCGTTCATCTGTCGCTCAAGCCGTCGTCATCTATTTGTCTGCTCGTAACGTCCGCCACCAGTTCGATCGACAATCCAATCCGCCGTTTACAAGCCACCGCCGCCGTTTCTGCCCTATATCAGTCCAGTCCGCCGCCATCAACAGTTTATGCATATATGGTAATAGTTTGGTTGTAATTGACAGGGCTAGGAAGAGACAATAA

Protein sequence

MFASCCSSEVAFVCRRSQVRRKPQVRTSHRRLNEVAFVHRLPVNFRSSVAQAVVIYLSARNVRHQFDRQSNPPFTSHRRRFCPISVQSAAINSLCIYGNSLVVIDRARKRQ

Homology

[Close]

BLAST of MELO3C030226.jh1 vs. NCBI nr
Match: KAA0034992.1 (bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase isoform X2 [Cucumis melo var. makuwa] >TYK02335.1 bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 186 bits (472), Expect = 5.28e-58
Identity = 94/97 (96.91%), Postives = 94/97 (96.91%), Query Frame = 0


Query: 1  MFASCCSSEVAFVCRRSQVRRKPQVRTSHRRLNEVAFVHRLPVNFRSSVAQAVVIYLSAR 60
          MFASCCSSEVAFVCRRSQVRRKPQVRTSHRRLNEVAFVHRLPVNFRSSVAQAVVIYLSAR
Sbjct: 1  MFASCCSSEVAFVCRRSQVRRKPQVRTSHRRLNEVAFVHRLPVNFRSSVAQAVVIYLSAR 60

Query: 61 NVRHQFDRQSNPPFTSHRRRFCPISVQSAAINSLCIY 97
          NVRHQFDRQSNPPFTSHRRRFCPISVQSAAIN L  Y
Sbjct: 61 NVRHQFDRQSNPPFTSHRRRFCPISVQSAAINRLLAY 97

[Close]

BLAST of MELO3C030226.jh1 vs. ExPASy TrEMBL
Match: A0A5D3BT31 (Bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G00240 PE=4 SV=1)

HSP 1 Score: 186 bits (472), Expect = 2.56e-58
Identity = 94/97 (96.91%), Postives = 94/97 (96.91%), Query Frame = 0


Query: 1  MFASCCSSEVAFVCRRSQVRRKPQVRTSHRRLNEVAFVHRLPVNFRSSVAQAVVIYLSAR 60
          MFASCCSSEVAFVCRRSQVRRKPQVRTSHRRLNEVAFVHRLPVNFRSSVAQAVVIYLSAR
Sbjct: 1  MFASCCSSEVAFVCRRSQVRRKPQVRTSHRRLNEVAFVHRLPVNFRSSVAQAVVIYLSAR 60

Query: 61 NVRHQFDRQSNPPFTSHRRRFCPISVQSAAINSLCIY 97
          NVRHQFDRQSNPPFTSHRRRFCPISVQSAAIN L  Y
Sbjct: 61 NVRHQFDRQSNPPFTSHRRRFCPISVQSAAINRLLAY 97

The following BLAST results are available for this feature:

BLAST of MELO3C030226.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0034992.1	5.28e-58	96.91	bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate amino...	[more]

BLAST of MELO3C030226.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C030226.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BT31	2.56e-58	96.91	Bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate amino...	[more]

BLAST of MELO3C030226.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C030226.jh1.t1	MELO3C030226.jh1.t1	mRNA