MELO3C030223.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C030223.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionRetrotransposon protein
Locationchr03: 18179729 .. 18180189 (+)
RNA-Seq ExpressionMELO3C030223.jh1
SyntenyMELO3C030223.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGGACGAGCTTGCCAAAGAAATTTTCAGTGATTGGGAGTTGCGTAATAAGTAGCACGGGTAATTGAATTAGTAGTTCAGTGTTTATGCTTAGTTTAATTGTTAATAATACCCCATTTACTTGTTTTTCCACGGTGTTTCTTTTAGCGAATGCATTTGTTTATCGACGATATGACACACTGGCAATTCACTAGAAGCACAATGTATTATGTTATTATGTGGTTTTTTCTAAGCGAAACTTCGTTTACTAATATGATTGCCTTTTTTTTAGTATGACAAGTTCTTCAAAGGCCCCGAAGTACTTATGGACAAAAGAGGAGGAGTCCACCCTCGTCGAGTGTCTGATGGAGTTGGTCAGCACCAGCAGTTGGAGGTTCGACAACGGGATCTTTAAACCCGAGTACCATAGTCAGCTTGCAAGAATGGTGGCTCAAAAGATGTCAAGACGTAACAACTAG

mRNA sequence

ATGGAGGGACGAGCTTGCCAAAGAAATTTTCATATGACAAGTTCTTCAAAGGCCCCGAAGTACTTATGGACAAAAGAGGAGGAGTCCACCCTCGTCGAGTGTCTGATGGAGTTGGTCAGCACCAGCAGTTGGAGGTTCGACAACGGGATCTTTAAACCCGAGTACCATAGTCAGCTTGCAAGAATGGTGGCTCAAAAGATGTCAAGACGTAACAACTAG

Coding sequence (CDS)

ATGGAGGGACGAGCTTGCCAAAGAAATTTTCATATGACAAGTTCTTCAAAGGCCCCGAAGTACTTATGGACAAAAGAGGAGGAGTCCACCCTCGTCGAGTGTCTGATGGAGTTGGTCAGCACCAGCAGTTGGAGGTTCGACAACGGGATCTTTAAACCCGAGTACCATAGTCAGCTTGCAAGAATGGTGGCTCAAAAGATGTCAAGACGTAACAACTAG

Protein sequence

MEGRACQRNFHMTSSSKAPKYLWTKEEESTLVECLMELVSTSSWRFDNGIFKPEYHSQLARMVAQKMSRRNN
Homology
BLAST of MELO3C030223.jh1 vs. NCBI nr
Match: KAA0034973.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK26996.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 122 bits (306), Expect = 7.06e-34
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0

Query: 12 MTSSSKAPKYLWTKEEESTLVECLMELVSTSSWRFDNGIFKPEYHSQLARMVAQKMSRR 70
          MTSSSKAPKYLWTKEEESTLVECLMELVSTSSWRFDNGIFKPEYHSQLARMVAQKMSRR
Sbjct: 1  MTSSSKAPKYLWTKEEESTLVECLMELVSTSSWRFDNGIFKPEYHSQLARMVAQKMSRR 59

BLAST of MELO3C030223.jh1 vs. NCBI nr
Match: TYK24214.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 92.0 bits (227), Expect = 4.89e-22
Identity = 40/56 (71.43%), Postives = 48/56 (85.71%), Query Frame = 0

Query: 12 MTSSSKAPKYLWTKEEESTLVECLMELVSTSSWRFDNGIFKPEYHSQLARMVAQKM 67
          M SSS+AP +LWTKEE++T VECL+ELV+   WR DNG F+PEYHSQLARM+AQKM
Sbjct: 1  MASSSRAPNHLWTKEEDATFVECLVELVNNDGWRSDNGTFRPEYHSQLARMMAQKM 56

BLAST of MELO3C030223.jh1 vs. NCBI nr
Match: KAA0053618.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 81.3 bits (199), Expect = 8.48e-18
Identity = 38/60 (63.33%), Postives = 47/60 (78.33%), Query Frame = 0

Query: 12 MTSSSKAPKYLWTKEEESTLVECLMELVSTSSWRFDNGIFKPEYHSQLARMVAQKMSRRN 71
          MTSSS+ PK+ WTKEEE+ LVECL+ELV+   WR DNG F+P Y +QLARM+A K+S  N
Sbjct: 1  MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKISGSN 60

BLAST of MELO3C030223.jh1 vs. NCBI nr
Match: KAA0057257.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK18706.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 82.4 bits (202), Expect = 1.39e-17
Identity = 34/56 (60.71%), Postives = 47/56 (83.93%), Query Frame = 0

Query: 12 MTSSSKAPKYLWTKEEESTLVECLMELVSTSSWRFDNGIFKPEYHSQLARMVAQKM 67
          M++S++AP+++WTKEEE TLVECLMELVS   W+ DNG F+PEY +QL RM+ +K+
Sbjct: 1  MSTSNRAPRHVWTKEEEETLVECLMELVSMGGWKSDNGTFRPEYLAQLVRMMTEKL 56

BLAST of MELO3C030223.jh1 vs. NCBI nr
Match: KAA0053179.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 80.1 bits (196), Expect = 1.46e-17
Identity = 33/56 (58.93%), Postives = 47/56 (83.93%), Query Frame = 0

Query: 12 MTSSSKAPKYLWTKEEESTLVECLMELVSTSSWRFDNGIFKPEYHSQLARMVAQKM 67
          M++S++AP+++WT+EEE TLVECLMELVS   W+ DNG F+P Y +QL RM+A+K+
Sbjct: 1  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKL 56

BLAST of MELO3C030223.jh1 vs. ExPASy TrEMBL
Match: A0A5D3DTI1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold322G00720 PE=4 SV=1)

HSP 1 Score: 122 bits (306), Expect = 3.42e-34
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0

Query: 12 MTSSSKAPKYLWTKEEESTLVECLMELVSTSSWRFDNGIFKPEYHSQLARMVAQKMSRR 70
          MTSSSKAPKYLWTKEEESTLVECLMELVSTSSWRFDNGIFKPEYHSQLARMVAQKMSRR
Sbjct: 1  MTSSSKAPKYLWTKEEESTLVECLMELVSTSSWRFDNGIFKPEYHSQLARMVAQKMSRR 59

BLAST of MELO3C030223.jh1 vs. ExPASy TrEMBL
Match: A0A5D3DKT3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold27G00160 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 2.37e-22
Identity = 40/56 (71.43%), Postives = 48/56 (85.71%), Query Frame = 0

Query: 12 MTSSSKAPKYLWTKEEESTLVECLMELVSTSSWRFDNGIFKPEYHSQLARMVAQKM 67
          M SSS+AP +LWTKEE++T VECL+ELV+   WR DNG F+PEYHSQLARM+AQKM
Sbjct: 1  MASSSRAPNHLWTKEEDATFVECLVELVNNDGWRSDNGTFRPEYHSQLARMMAQKM 56

BLAST of MELO3C030223.jh1 vs. ExPASy TrEMBL
Match: A0A5A7UEX3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold10848G00010 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 4.11e-18
Identity = 38/60 (63.33%), Postives = 47/60 (78.33%), Query Frame = 0

Query: 12 MTSSSKAPKYLWTKEEESTLVECLMELVSTSSWRFDNGIFKPEYHSQLARMVAQKMSRRN 71
          MTSSS+ PK+ WTKEEE+ LVECL+ELV+   WR DNG F+P Y +QLARM+A K+S  N
Sbjct: 1  MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKISGSN 60

BLAST of MELO3C030223.jh1 vs. ExPASy TrEMBL
Match: A0A5A7URI5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold257G00060 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 6.73e-18
Identity = 34/56 (60.71%), Postives = 47/56 (83.93%), Query Frame = 0

Query: 12 MTSSSKAPKYLWTKEEESTLVECLMELVSTSSWRFDNGIFKPEYHSQLARMVAQKM 67
          M++S++AP+++WTKEEE TLVECLMELVS   W+ DNG F+PEY +QL RM+ +K+
Sbjct: 1  MSTSNRAPRHVWTKEEEETLVECLMELVSMGGWKSDNGTFRPEYLAQLVRMMTEKL 56

BLAST of MELO3C030223.jh1 vs. ExPASy TrEMBL
Match: A0A5A7UI78 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24297G00010 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 7.08e-18
Identity = 33/56 (58.93%), Postives = 47/56 (83.93%), Query Frame = 0

Query: 12 MTSSSKAPKYLWTKEEESTLVECLMELVSTSSWRFDNGIFKPEYHSQLARMVAQKM 67
          M++S++AP+++WT+EEE TLVECLMELVS   W+ DNG F+P Y +QL RM+A+K+
Sbjct: 1  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKL 56

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0034973.17.06e-34100.00retrotransposon protein [Cucumis melo var. makuwa] >TYK26996.1 retrotransposon p... [more]
TYK24214.14.89e-2271.43retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0053618.18.48e-1863.33retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0057257.11.39e-1760.71retrotransposon protein [Cucumis melo var. makuwa] >TYK18706.1 retrotransposon p... [more]
KAA0053179.11.46e-1758.93retrotransposon protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3DTI13.42e-34100.00Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3DKT32.37e-2271.43Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7UEX34.11e-1863.33Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7URI56.73e-1860.71Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7UI787.08e-1858.93Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C030223.jh1.t1MELO3C030223.jh1.t1mRNA