MELO3C030221 (gene) Melon (DHL92) v4

Overview
NameMELO3C030221
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionWD_REPEATS_REGION domain-containing protein
Locationchr03: 17659848 .. 17660912 (-)
RNA-Seq ExpressionMELO3C030221
SyntenyMELO3C030221
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCAGACTTAGCACGAGAAGAAGAAGGATGTTTGTTTATTGTATGCTTTACAACGTAATATTTTTCAGTTTTTTTCTTTTGAGTTGTAGAAAATTAGTTTGAATTTATTTTTGAGTTGTAGAAAATTAGTTTGAATTTATGGATGTTTAAAACTTTGAATTATTGAATATTGAACGGGTACAACAATTTTAAACTTTAAAAATATTAGGAATGAAAAAAATACAATACAACTCAACAATCTAATATTTTATTGGTTTAATAAATTAATTGCAGTTATTTGGATCGTTAATCTAACCAATCAAAAAATATTTCGGTGTGCGCCCCTTCCACAATTCGTTGGAAAACAACGTGAAAATTTATCATAAAAAAACCAACCCGCCAACCTTCGTTCACGCAAACCACCTAACCCTCGCGCACTCTCTCTCTCAGTTGCACACGTCTGCCGCCGCTCCCAGCTCCGATCACCGCACGTCCGCCGCCTAGTCCTACCGCCATTTTCGTCTGCCACTCGCCAGGGTTGTCGCCGCCAGTAAGTCTCCCCGGATTTCATTCTCTATCTCTAAGTTTTGTTCACTGCCAACACCTGAGCACTGCGGCCGCCCTACCCAACTGCCGCGCTGCAGTCACAACCGCCATCCAGATCTCTGCCACTGCCGTCTGCCATCGCCGTTCGTTAATTCTGAGTTTTTGGGTAGGTTTGATTTTTTTGGGGGGATAATTTGAAGGTTTTCCTGGAATGATTTTGAGTACCCATTAAGTTTAGGCCTTAATTTTGATATACTCATGATTTTTGGATATTTTTATATATTTTATATTCTTTTTAGTTGATTTTCTGTATATTTTCTTAATTGTTTGGTTCTATCACATATGAGCAGAGTTTTATAAAAAAGCAAGACATACTTAAGCCTCGCAACTTTTTAGGGGATAAAACAATTATCTTTCCTTTTTTTGTAAAGTTTATGACAGAGAAGTACAAGATTTTTTTGTTTTTTAAATATAGTATCGGTGATAAATGATATAACAAAAAGTTTAAGAGTCAAGGTTTTTGTTAAGGTTGCTTGA

mRNA sequence

ATGGTCAGACTTAGCACGAGAAGAAGAAGGATTTGCACACGTCTGCCGCCGCTCCCAGCTCCGATCACCGCACGTCCGCCGCCTAGTCCTACCGCCATTTTCGTCTGCCACTCGCCAGGGTTGTCGCCGCCAGTAAGTCTCCCCGGATTTCATTCTCTATCTCTAAGTTTTGTTCACTGCCAACACCTGAGCACTGCGGCCGCCCTACCCAACTGCCGCGCTGCAGTCACAACCGCCATCCAGATCTCTGCCACTGCCGTCTGCCATCGCCGTTCGTTAATTCTGAGTTTTTGGGTAGTATCGGTGATAAATGATATAACAAAAAGTTTAAGAGTCAAGGTTTTTGTTAAGGTTGCTTGA

Coding sequence (CDS)

ATGGTCAGACTTAGCACGAGAAGAAGAAGGATTTGCACACGTCTGCCGCCGCTCCCAGCTCCGATCACCGCACGTCCGCCGCCTAGTCCTACCGCCATTTTCGTCTGCCACTCGCCAGGGTTGTCGCCGCCAGTAAGTCTCCCCGGATTTCATTCTCTATCTCTAAGTTTTGTTCACTGCCAACACCTGAGCACTGCGGCCGCCCTACCCAACTGCCGCGCTGCAGTCACAACCGCCATCCAGATCTCTGCCACTGCCGTCTGCCATCGCCGTTCGTTAATTCTGAGTTTTTGGGTAGTATCGGTGATAAATGATATAACAAAAAGTTTAAGAGTCAAGGTTTTTGTTAAGGTTGCTTGA

Protein sequence

MVRLSTRRRRICTRLPPLPAPITARPPPSPTAIFVCHSPGLSPPVSLPGFHSLSLSFVHCQHLSTAAALPNCRAAVTTAIQISATAVCHRRSLILSFWVVSVINDITKSLRVKVFVKVA
Homology
[Close]
BLAST of MELO3C030221 vs. NCBI nr
Match: XP_038884723.1 (angio-associated migratory cell protein [Benincasa hispida])

HSP 1 Score: 91.7 bits (226), Expect = 4.7e-15
Identity = 49/63 (77.78%), Postives = 51/63 (80.95%), Query Frame = 0 

Query: 13  TRLPPLPAPITARPPPSPTAIFVCHSPGLSPPVSLPGFHSLSLSFVHCQHLSTAAALPNC 72
           TRLPP PAPIT RPP SPTA+ VC SPGL  PVSL GF SLS+SFVHCQ  STAAALPN 
Sbjct: 56  TRLPPPPAPITTRPPASPTAVSVCRSPGLPRPVSLAGFLSLSVSFVHCQQPSTAAALPNS 115

Query: 73  RAA 76
           RAA
Sbjct: 116 RAA 118

[Close]
BLAST of MELO3C030221 vs. ExPASy TrEMBL
Match: A0A0A0KBX7 (WD_REPEATS_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G016980 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 1.3e-13
Identity = 46/54 (85.19%), Postives = 48/54 (88.89%), Query Frame = 0 

Query: 34 FVCHSPGLSPPVSLPGFHSLSLSFVHCQHLSTAAALPNCRAAVTTAIQISATAV 88
          F CHS GLSP VSL GF SLSLSFV+CQHLS AAALPNCRAAVTTAIQ+SATAV
Sbjct: 41 FCCHSLGLSPLVSLLGFPSLSLSFVYCQHLSIAAALPNCRAAVTTAIQLSATAV 94

The following BLAST results are available for this feature:
BLAST of MELO3C030221 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038884723.14.7e-1577.78angio-associated migratory cell protein [Benincasa hispida][more]
BLAST of MELO3C030221 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C030221 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KBX71.3e-1385.19WD_REPEATS_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G... [more]
BLAST of MELO3C030221 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C030221.1MELO3C030221.1mRNA