MELO3C030208.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C030208.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Descriptionprotein PRD1 isoform X1
Locationchr03: 16840275 .. 16842542 (-)
RNA-Seq ExpressionMELO3C030208.jh1
SyntenyMELO3C030208.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCAAATTTGAGTTCCCACCCCCAATTGTTGTTGGAAAAAAAGAGGGAAAAGAAAAAAGAGACAAGAAAAAGAAACCTACGGTTCGTATTTTGCCTATTCAAACATACTTTCTAGTTTTCCAACTTTTAGCCTTGTGCTCATTAATATAGTAATTGATTATTACCTTAATAATCATTTTAGAAAGTTTAATATAAGCCTGGTCTCTTCTTTTCAGACTTGCAGGAAGCATATCTACTATGAGAAAGATGAGGATACTCAAACAGAGAGAGAAATCGGGAATGTGTTTGCTAACGTGGATGACGATCTGGGAGAAGTTTGTGAGTATCTTAATCACTTAATTCAATCATATTCACAGAAGAATAAAAGATTATTGAAGGAGATAGAGATGTTTTTTACGGCTTTAGCAGAGAAGGAGACTAGCTGAACTGTCAACTACTCTTCGTTGATTCAAGTGAAGTAATAAATCATTAAATATACACCAAATTTAGAACACACAAAAACAATGTTCATAACTCTGAGCATATAAAATTCCCCTTGGTAAGTTTTCATGCAAAAGCTGTCTTGGTTGTTAATGAACAGTCAAATCCCTTGAAAAGTTAAATTTTTTTATGTAGTTATAAGTTAGTGTATTGGGTAAGTCCAGTTGGCCTTGCCTTTCAATAACTAGATCAATGAGTTCTTCATATGCTCAAATTGTATTTTCCATATCCTCTGGTTCTAGAGAAGTGTATACCATTTCCCATTTTTTTTAGGAATTTCTCGTTTCCAAATGCTTGACAAACAAGCGAGTCCGCGTTCATCTCCACTGCTCTAGAAAGTAAGTTCATCTTTGTACCTTCCTCAAAAATTTCGGTGCCATCATATCTTTTGACATTTTCATCTAATGGAATTCCAATGGTTACTCTATGAGGTTTGAGACGTCTTCTCGTATTCTAGAGACACAGCAACTTAAATTTTTTCATTTTCAAATAAGCTTGGAGTATAAATTATAATGTTTGCAAACTGTCACATTGCAAATTTCATTAACATTTAAAATTTCCTAAACAGAGTTCATACCCCTTCGACTTTATTGACAAGCATATGACAGGTACCAAACAAGAATTGTCTTTCTAGTTTTGATGTACAGTTCGATACCCAAGGTGACCAATCTTGAATATATATGGTTATATATATGGTTATGTATATGAATGTGAGTCGGTGTTCATCCTACTTCATATTGATCTTTGAGTTATGGATTCTTCCATAAGAACATTTTCATTTTATCTAAGATAACCAAATTAGGCATAAGCTTCCTACATTATAACCAAGGTACATGACAGTAAATCCATTCTTTTAGATAGAATCGTTTGGTACAATCCTTCCACCTTTTTAAGCTAGCTACCCTTAGAGTACTCTTTGATAAGCAAATTGTAAGTTATTTGGTTGGGAAAACATCCACCCAATTTCGTCTATATTTATATTTCAGACACTCAGACCATCGCATCATACATTCTAGAATTTCCATAAGCTTCAATTAGGCGATCATTGGTAACCTCTTCATATCGTATTGATTTCTTTCTAGTCTCCATAGTCTAAAGTAATATAAAAGGATAGGAACCTCTTTTCTAGAGGTCAGAAAGCAGTGCTTTTGCCTTTAACGATAACTAAGGGTTAAGAAACGTGCCCTCTTATAGATGAATGAATCTCCCATTCAGACCTTCATTCATCCATAAAGGATTTTACACGTGTCAACAATAATTTACAAAATGGAAAGAAAACAAGAATGACGGACATTACAAGACCCTTGAAAGACATCTTATCTCTTTGGAATCTTTCTTTCTGAAAGGATAAGATTACGACAGGATTTGGTGGCATAGGACCCTATCCTTATCTCTTTCTAATCTAAAAAGAAAAAGTCGAAATACAAAAGTAAAACAAACTAAAGCTAAAAAGATATGTTTGTATTTGTTCTTAAGTCTTTCTCGATATCATCTCTCCACAATAGTGATGATATCACCCGACTTTGTCTAAATGGCCTCCATATGTCATCAATATTAATTTCGTAAAATCTTTGGAATTGGATACATCCAGGGACTTAATCTTGACTTTTCTGTCAAAAGCTGCCCAAGCATCTTAATCCTTTTGAATTTATTGGATTAATTGGACGTGGTAGGTTTTCCTATCTGGAATCAATCCTCGCGAACGACGTTGACCTGTGGGTGGTCACTCCACTTAAGTCGCTTGCCATCTCCATCACCTCCCCTTATTTTGATTATCTTAATTGA

mRNA sequence

ATGGCCAAATTTGAGTTCCCACCCCCAATTGTTGTTGGAAAAAAAGAGGGAAAAGAAAAAAGAGACAAGAAAAAGAAACCTACGACTTGCAGGAAGCATATCTACTATGAGAAAGATGAGGATACTCAAACAGAGAGAGAAATCGGGAATGTGTTTGCTAACGTGGATGACGATCTGGGAGAAGAATTTCTCGTTTCCAAATGCTTGACAAACAAGCGAGTCCGCGTTCATCTCCACTGCTCTAGAAAGTTTTCCTATCTGGAATCAATCCTCGCGAACGACGTTGACCTGTGGGTGGTCACTCCACTTAAGTCGCTTGCCATCTCCATCACCTCCCCTTATTTTGATTATCTTAATTGA

Coding sequence (CDS)

ATGGCCAAATTTGAGTTCCCACCCCCAATTGTTGTTGGAAAAAAAGAGGGAAAAGAAAAAAGAGACAAGAAAAAGAAACCTACGACTTGCAGGAAGCATATCTACTATGAGAAAGATGAGGATACTCAAACAGAGAGAGAAATCGGGAATGTGTTTGCTAACGTGGATGACGATCTGGGAGAAGAATTTCTCGTTTCCAAATGCTTGACAAACAAGCGAGTCCGCGTTCATCTCCACTGCTCTAGAAAGTTTTCCTATCTGGAATCAATCCTCGCGAACGACGTTGACCTGTGGGTGGTCACTCCACTTAAGTCGCTTGCCATCTCCATCACCTCCCCTTATTTTGATTATCTTAATTGA

Protein sequence

MAKFEFPPPIVVGKKEGKEKRDKKKKPTTCRKHIYYEKDEDTQTEREIGNVFANVDDDLGEEFLVSKCLTNKRVRVHLHCSRKFSYLESILANDVDLWVVTPLKSLAISITSPYFDYLN
Homology
[Close]
BLAST of MELO3C030208.jh1 vs. NCBI nr
Match: XP_008464336.1 (PREDICTED: protein PRD1 isoform X2 [Cucumis melo] >XP_016903184.1 PREDICTED: protein PRD1 isoform X3 [Cucumis melo])

HSP 1 Score: 70.5 bits (171), Expect = 3.09e-11
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 0 

Query: 29   TCRKHIYYEKDEDTQTEREIGNVFANVDDDLGE 61
            TCRKHIYYEKDEDTQTEREIGNVFANVDDDLGE
Sbjct: 1207 TCRKHIYYEKDEDTQTEREIGNVFANVDDDLGE 1239

[Close]
BLAST of MELO3C030208.jh1 vs. NCBI nr
Match: TYK01656.1 (protein PRD1 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 70.5 bits (171), Expect = 3.09e-11
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 0 

Query: 29   TCRKHIYYEKDEDTQTEREIGNVFANVDDDLGE 61
            TCRKHIYYEKDEDTQTEREIGNVFANVDDDLGE
Sbjct: 1204 TCRKHIYYEKDEDTQTEREIGNVFANVDDDLGE 1236

[Close]
BLAST of MELO3C030208.jh1 vs. NCBI nr
Match: XP_008464335.1 (PREDICTED: protein PRD1 isoform X1 [Cucumis melo])

HSP 1 Score: 70.5 bits (171), Expect = 3.09e-11
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 0 

Query: 29   TCRKHIYYEKDEDTQTEREIGNVFANVDDDLGE 61
            TCRKHIYYEKDEDTQTEREIGNVFANVDDDLGE
Sbjct: 1207 TCRKHIYYEKDEDTQTEREIGNVFANVDDDLGE 1239

[Close]
BLAST of MELO3C030208.jh1 vs. NCBI nr
Match: XP_031743762.1 (protein PUTATIVE RECOMBINATION INITIATION DEFECT 1 isoform X3 [Cucumis sativus])

HSP 1 Score: 63.2 bits (152), Expect = 1.13e-08
Identity = 30/33 (90.91%), Postives = 31/33 (93.94%), Query Frame = 0 

Query: 29   TCRKHIYYEKDEDTQTEREIGNVFANVDDDLGE 61
            TCRKHIY EKD DTQTE+EIGNVFANVDDDLGE
Sbjct: 1152 TCRKHIYNEKDGDTQTEKEIGNVFANVDDDLGE 1184

[Close]
BLAST of MELO3C030208.jh1 vs. NCBI nr
Match: XP_011656476.1 (protein PUTATIVE RECOMBINATION INITIATION DEFECT 1 isoform X2 [Cucumis sativus])

HSP 1 Score: 63.2 bits (152), Expect = 1.13e-08
Identity = 30/33 (90.91%), Postives = 31/33 (93.94%), Query Frame = 0 

Query: 29   TCRKHIYYEKDEDTQTEREIGNVFANVDDDLGE 61
            TCRKHIY EKD DTQTE+EIGNVFANVDDDLGE
Sbjct: 1204 TCRKHIYNEKDGDTQTEKEIGNVFANVDDDLGE 1236

[Close]
BLAST of MELO3C030208.jh1 vs. ExPASy TrEMBL
Match: A0A1S4E4N2 (protein PRD1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103502245 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.49e-11
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 0 

Query: 29   TCRKHIYYEKDEDTQTEREIGNVFANVDDDLGE 61
            TCRKHIYYEKDEDTQTEREIGNVFANVDDDLGE
Sbjct: 1207 TCRKHIYYEKDEDTQTEREIGNVFANVDDDLGE 1239

[Close]
BLAST of MELO3C030208.jh1 vs. ExPASy TrEMBL
Match: A0A5D3BTV9 (Protein PRD1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold128G00200 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.50e-11
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 0 

Query: 29   TCRKHIYYEKDEDTQTEREIGNVFANVDDDLGE 61
            TCRKHIYYEKDEDTQTEREIGNVFANVDDDLGE
Sbjct: 1204 TCRKHIYYEKDEDTQTEREIGNVFANVDDDLGE 1236

[Close]
BLAST of MELO3C030208.jh1 vs. ExPASy TrEMBL
Match: A0A1S3CLC8 (protein PRD1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502245 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.50e-11
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 0 

Query: 29   TCRKHIYYEKDEDTQTEREIGNVFANVDDDLGE 61
            TCRKHIYYEKDEDTQTEREIGNVFANVDDDLGE
Sbjct: 1207 TCRKHIYYEKDEDTQTEREIGNVFANVDDDLGE 1239

[Close]
BLAST of MELO3C030208.jh1 vs. ExPASy TrEMBL
Match: A0A0A0KDQ9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G022280 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 5.47e-09
Identity = 30/33 (90.91%), Postives = 31/33 (93.94%), Query Frame = 0 

Query: 29   TCRKHIYYEKDEDTQTEREIGNVFANVDDDLGE 61
            TCRKHIY EKD DTQTE+EIGNVFANVDDDLGE
Sbjct: 1207 TCRKHIYNEKDGDTQTEKEIGNVFANVDDDLGE 1239

The following BLAST results are available for this feature:
BLAST of MELO3C030208.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008464336.13.09e-11100.00PREDICTED: protein PRD1 isoform X2 [Cucumis melo] >XP_016903184.1 PREDICTED: pro... [more]
TYK01656.13.09e-11100.00protein PRD1 isoform X1 [Cucumis melo var. makuwa][more]
XP_008464335.13.09e-11100.00PREDICTED: protein PRD1 isoform X1 [Cucumis melo][more]
XP_031743762.11.13e-0890.91protein PUTATIVE RECOMBINATION INITIATION DEFECT 1 isoform X3 [Cucumis sativus][more]
XP_011656476.11.13e-0890.91protein PUTATIVE RECOMBINATION INITIATION DEFECT 1 isoform X2 [Cucumis sativus][more]
BLAST of MELO3C030208.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C030208.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S4E4N21.49e-11100.00protein PRD1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103502245 PE=4 SV=1[more]
A0A5D3BTV91.50e-11100.00Protein PRD1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3CLC81.50e-11100.00protein PRD1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502245 PE=4 SV=1[more]
A0A0A0KDQ95.47e-0990.91Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G022280 PE=4 SV=1[more]
BLAST of MELO3C030208.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C030208.jh1.t1MELO3C030208.jh1.t1mRNA