MELO3C030202 (gene) Melon (DHL92) v4

Overview
NameMELO3C030202
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionDNA/RNA polymerases superfamily protein
Locationchr03: 15778061 .. 15781830 (+)
RNA-Seq ExpressionMELO3C030202
SyntenyMELO3C030202
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCAGCAAAAGAAAAAAAAGGGGGGGGGGGGCGAGAATGATGATTCTCCTAATTCCCATAGAAGCTTAGCCCTGGGCGAGAATGATGCTTCTTCTGATTCCCATAGAAGCAAGGGGTCTGCTGAAGAGAATAATGTCACTTCATGTAATCATGATTCATTAAAAAACTATTCAACATGTTTAAGAAAGAAAACAAGTCCTGTTTTGCCTTCCCTGAGCAGACATGCACTAAAGACTTGTATCCTGAGGAATTTCGAGTAACACATCTGATTATTCACCCTGAAGAAGCTCTGAATTTTGTCAATCTCGTGGTTCCTTCTACCTCTTTGCCATTTTTGAAAAAAAAAAAACAATGTTCAGCATCTTGGGCTAGTTTTGATGAAGCCTCGATAAACCATTTGTTGTTCCTTTTGTTACTTGTAGAATATTTTGAAAGTCCAAAATTTCAATGTTGAAACCCTCTTTTCAAACCAGATGCACTAGTAAGACTTGGCAATTTTACAAATTTTCGCTTCCATATTGCCATCGAAGAAGAGGAATGATGTAGGAAGTTATAACAAATTGATTAGTTTTCAAGCAGTCAGTTTTACTTCTGCTTAAGTCTTTAATTTTCAAACAACCTTTCGTTAGTTGTTAGGTTGTTTAGTTTTACTTTTTGTTGGTTAGTTGTAAACAATTTTACTTTATGTTGGTTAGTTATAACCAACTAACCTCTTGTATAAATAGGTATTTTAAGATCTTCATTACAGAATAATAAAAGATAAAGAAAATTTTAATATTCTTGATTAAAAGATTCAAGTCAATTAATATCAGAGCAACGATCCAATGCGCATTCTTTTTCGGATCAATGTTTTTCATGGTTGCGGAGGCTTCCTCTTCACGACAACTCAGATGTTGAGCCTGAGGCTAGAGATTACCGTGTGCACACTGGTTAGATTTCGTTGTTGACGTTGAGTGTACTCCGTAACAACGGTGTTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGCTAAGCGGGCTCCACTACATCGTAGAGCTTGTAAACGTTGTTGTACTGGGTGTACCCTACACAACGTAGATTTGTCATGTTAGTTAAAATGCTTCGATATACTTTATATGCCTTGCTAGATTTCAATAACGAACATGCTGAGTATTTGAGGAAGCTATTCTTACTACTACACGTTTACATTTACGACTTGTATAAACAGATTTATATGTGTAAAGTTTTCACGTGCTCTTATCTTTAAATTCATAGTTCTAAACTGAGTCACTCACTGAGCTTCATAGCTCACCCTTTCCAAAATGTTTTACCCATTTTTCAGGTAGAGATCGAATTCCCGGTGCTTGATAGACTGCCTTAGTTTGCTGAAGCTCCGTTATCGATTGCCAGTACGTGTTTTGAGTTGGGCATAGAGTCTGTTGTGTTATGATGTATATACACCCTTGTATGTTATAGATACTCCATAATTTGTATAAGCTTTAGGAGCTGCAGTTGTGTAAATTTTTGTTGGTTATATTTTGATTAAGGTGTCTTTAGGTTTACTCGTGAAATCAGTAAATTTCGAGGTATACTTCATGTATGTGTTTGACTAGCCTAGGATCCGCTGTGTTTTGTTGCATGTATAATAGTTTATATACTAGGTTGGCAAGTTCATCACATGAAAGTTTTAAGTAGAGTCGACAGATACAGGTACAGAAAAGCATTGTTCGTCGGCTTCATGCCATATTTCGGTCTAAGGTAGCAGGTAGTCCAGGAGGGGGTGTGACAAGTTTTCTTCTAAATGAAGGCATAAACTTTTCAAGAAACCTAGGAAAAAACCAAGATCACCAAAAATTCTTATCTAGAATTCCAAATGAAAAAGATCACAATCCAAGAAACTTATGTCAAGCAAGATTCAGACCTTAAGATCACCACCAGGGAGGGGTTTTGAGAGCCTTAGTGACATTGTTGATATTGCTTGTAGAGTAGTTGTTGGTAGTTGATCGGTAGAAATCATTTTTTCATGAGCCTTAGCATCTTTGGTCAGCTTCTAATAGGTTGTTTACCAAATAGTCACCTATTTTTTGTCGTTGATCCCACCAAGCATTAGCGCCACCTTGGGGAGCTGAAACGTCACCATCCAGACTTTCTTGTGTTCTGGGGTATTAACATAGTAAAAGAAAAAAAATTCTATATTCTTGATCCAATCAATAAAGTTTTTCACGTCCATTCCACCTTTGAAAGTAGGAAGATCCACCTTCATTCTTATTTCTTGATCTTCTTAAATATATGGTCGAGAATCGAGTCCTCTTGTGGATCTTGATGAACATTCAACAAATCAACGAAAGAGTCGGAATCATCCATCAAGTAGCATGGTAAGTTGTTCCTATAGAATTGATTGTTGTGGACTGATAACTTATAGAAATACAAGTTATTATAACCTTTGATGTAAAGTAATGAAATCTAATTGCATAAGAATAGAAGAAACCAAGGGAAAAAGTAGGTCATTTGATTAACCTATGAATAACATTGTACAAAAGAACCTTATACCACTTTTATTGCGTTTTAGTGCTTTTATCACATAATTTTAGGCAAAAGAAGTGAAGCTCGGTAATATAACGTTTACTCTGCGGCATAACACCTTCTCCTATATTCCATTTTATATTTTTCTTGTATTGTTTTGTAATATATACATAATAGTCGAGAGGCCTAAAGTTAATTTTATGAAAGAAATGCATTTCTTCTTTCATTCTCTCATATCTCTTTTACTTTCTACGTTTAATCTGTTTGGTTAACTTGTGAGCAACGAAATGTGTTTTTAATAACTAGAGAATCATAATATTTGCGCTATGAGTTTTGTTGTGTTAACGCAAACATCAAAGAATTATACACTTGAGAAGAACAATGATGTTTATTGTAATCATCTAACAAGTGAGAACACACATTTATCTAAGTGAGTGGCGAGAAGATTGTAGCGATACAATTTTATCGCCAAATTTATCTTTCGTATACGTTATCGAGAGGCCAATGTGTGTGGCGATAGCACCAAGAGGTTGTCCGCTTTAATTAAGGACAAATTAGTAATAATGTATTCAAGTTGATTAAATATAAATCATAGCTTAATTTTGTGTATTTGGATCCCGAGAGGCGAGCAAGTATGGCAAATGCGTTAAAAGTTCGCTCGCCCTAATTCTAAGTTAATGTATGCTTTTTATCGCCTTGAAGTATTAAATCATAAATCAATGCGATTAGATAAATAAGTTGTTCCTTCATCGCCATGCCTAGAAATGAGTTCATTTACGATCATCCTTTCTTCATCATGCTCATCTTGCACCGCTAAGTACCTTAGCATAGATAGTTAGGATAAAAGTATGTTGTGCATAACATTATTGTATAGTTTATACTGCATGATTTAGTTGCACAATAAGAGAATTTGGAGCTTAAATTCCCTGTGTTTGACCCTGGACTTACCAGGAAACTTTTCTTTGTTTATACTTGGGCGATAGAGAGAAAAACTTGCACGATATGCATATCTTTAGAAAGTTTGCTACACATGGATATGAATGTACCTTTTAACTTATGATCCTATTCAATCATCTAAAATAGTCACTCACTTAGAGCTTAGTATGACAAATCAACGATAGAAACTTATGCATAAATTATTTCAAGCATGGATGCAAACAACTTGGTTTCATGGACGTTCTTGATTTGTTGTAGCTTGGTTTCTTGGAGGTTAAATTGCTTCTTCTAAGGGTTGCACATGAATTCGAGTGA

mRNA sequence

ATGCCAGCAAAAGAAAAAAAAGGGGGGGGGGGGCGAGAATGATGATTCTCCTAATTCCCATAGAAGCTTAGCCCTGGGCGAGAATGATGCTTCTTCTGATTCCCATAGAAGCAAGGGGTCTGCTGAAGAGAATAATAAAGAAAACAAGTCCTGTTTTGCCTTCCCTGAGCAGACATGCACTAAAGACTTGTATCCTGAGGAATTTCGAGTAACACATCTGATTATTCACCCTGAAGAAGCTCTGAATTTTGTCAATCTCGTGAATATTTTGAAAGTCCAAAATTTCAATGTTGAAACCCTCTTTTCAAACCAGATGCACTATTATAACCAACTAACCTCTTGTATAAATAGTCAATTAATATCAGAGCAACGATCCAATGCGCATTCTTTTTCGGATCAATGTTTTTCATGGTTGCGGAGGCTTCCTCTTCACGACAACTCAGATGTTGAGCCTGAGGCTAGAGATTACCGTGTGCACACTGGTAGAGATCGAATTCCCGGTGTCTTTAGGTTTACTCGTGAAATCAGTAAATTTCGAGGTTGGCAAGTTCATCACATGAAAGTTTTAAGTAGAGTCGACAGATACAGGTACAGAAAAGCATTGTTCGTCGGCTTCATGCCATATTTCGGTCTAAGATCACAATCCAAGAAACTTATGTCAAGCAAGATTCAGACCTTAAGATCACCACCAGGGAGGGGTTTTGAGAGCCTTAGTGACATTGTTGATATTGCTTGTAGAGTAGTTGTTGAATCGAGTCCTCTTGTGGATCTTGATGAACATTCAACAAATCAACGAAAGAGTCGGAATCATCCATCAAGTAGCATGGCAAAAGAAGTGAAGCTCGGTAATATAACGTTTACTCTGCGGCATAACACCTTCTCCTATATTCCATTTTATATTTTTCTTGTATTGTTTTGTAATATATACATAATAGTCGAGAGGCCTAAACTTGGTTTCTTGGAGGTTAAATTGCTTCTTCTAAGGGTTGCACATGAATTCGAGTGA

Coding sequence (CDS)

TGCCAGCAAAAGAAAAAAAAGGGGGGGGGGGGCGAGAATGATGATTCTCCTAATTCCCATAGAAGCTTAGCCCTGGGCGAGAATGATGCTTCTTCTGATTCCCATAGAAGCAAGGGGTCTGCTGAAGAGAATAATAAAGAAAACAAGTCCTGTTTTGCCTTCCCTGAGCAGACATGCACTAAAGACTTGTATCCTGAGGAATTTCGAGTAACACATCTGATTATTCACCCTGAAGAAGCTCTGAATTTTGTCAATCTCGTGAATATTTTGAAAGTCCAAAATTTCAATGTTGAAACCCTCTTTTCAAACCAGATGCACTATTATAACCAACTAACCTCTTGTATAAATAGTCAATTAATATCAGAGCAACGATCCAATGCGCATTCTTTTTCGGATCAATGTTTTTCATGGTTGCGGAGGCTTCCTCTTCACGACAACTCAGATGTTGAGCCTGAGGCTAGAGATTACCGTGTGCACACTGGTAGAGATCGAATTCCCGGTGTCTTTAGGTTTACTCGTGAAATCAGTAAATTTCGAGGTTGGCAAGTTCATCACATGAAAGTTTTAAGTAGAGTCGACAGATACAGGTACAGAAAAGCATTGTTCGTCGGCTTCATGCCATATTTCGGTCTAAGATCACAATCCAAGAAACTTATGTCAAGCAAGATTCAGACCTTAAGATCACCACCAGGGAGGGGTTTTGAGAGCCTTAGTGACATTGTTGATATTGCTTGTAGAGTAGTTGTTGAATCGAGTCCTCTTGTGGATCTTGATGAACATTCAACAAATCAACGAAAGAGTCGGAATCATCCATCAAGTAGCATGGCAAAAGAAGTGAAGCTCGGTAATATAACGTTTACTCTGCGGCATAACACCTTCTCCTATATTCCATTTTATATTTTTCTTGTATTGTTTTGTAATATATACATAATAGTCGAGAGGCCTAAACTTGGTTTCTTGGAGGTTAAATTGCTTCTTCTAAGGGTTGCACATGAATTCGAGTGA

Protein sequence

CQQKKKKGGGGENDDSPNSHRSLALGENDASSDSHRSKGSAEENNKENKSCFAFPEQTCTKDLYPEEFRVTHLIIHPEEALNFVNLVNILKVQNFNVETLFSNQMHYYNQLTSCINSQLISEQRSNAHSFSDQCFSWLRRLPLHDNSDVEPEARDYRVHTGRDRIPGVFRFTREISKFRGWQVHHMKVLSRVDRYRYRKALFVGFMPYFGLRSQSKKLMSSKIQTLRSPPGRGFESLSDIVDIACRVVVESSPLVDLDEHSTNQRKSRNHPSSSMAKEVKLGNITFTLRHNTFSYIPFYIFLVLFCNIYIIVERPKLGFLEVKLLLLRVAHEFE
Homology
[Close]
BLAST of MELO3C030202 vs. NCBI nr
Match: KAA0048700.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 59.7 bits (143), Expect = 5.6e-05
Identity = 32/49 (65.31%), Postives = 36/49 (73.47%), Query Frame = 0 

Query: 186 MKVLSRVDRYRYRKALFVGFMPYFGLRSQSKKLMSSKIQTLRSPPGRGF 235
           MKVLSRVDRYRYRKALFVGFMP FGLRS +    ++ +QT     GR F
Sbjct: 1   MKVLSRVDRYRYRKALFVGFMPSFGLRSHA----TTYLQTTPVESGRDF 45

[Close]
BLAST of MELO3C030202 vs. NCBI nr
Match: KAA0035138.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 57.8 bits (138), Expect = 2.1e-04
Identity = 30/44 (68.18%), Postives = 34/44 (77.27%), Query Frame = 0 

Query: 186 MKVLSRVDRYRYRKALFVGFMPYFGLRSQSKKLMSSKIQTLRSP 230
           MKVLSRVDRYRYRKALFVGF P FGLR+ S K    K++ + SP
Sbjct: 1   MKVLSRVDRYRYRKALFVGFTPSFGLRAVSSK---KKLERVMSP 41

[Close]
BLAST of MELO3C030202 vs. NCBI nr
Match: KAA0063169.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 57.0 bits (136), Expect = 3.6e-04
Identity = 27/30 (90.00%), Postives = 28/30 (93.33%), Query Frame = 0 

Query: 186 MKVLSRVDRYRYRKALFVGFMPYFGLRSQS 216
           MKVLSRVDRYRYRKALFVGFMP FGLRS +
Sbjct: 1   MKVLSRVDRYRYRKALFVGFMPSFGLRSHA 30

[Close]
BLAST of MELO3C030202 vs. NCBI nr
Match: KAA0054081.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 56.6 bits (135), Expect = 4.7e-04
Identity = 28/43 (65.12%), Postives = 32/43 (74.42%), Query Frame = 0 

Query: 186 MKVLSRVDRYRYRKALFVGFMPYFGLRSQSKKLMSSKIQTLRS 229
           MKVLSRVDRYRYRKALFVGF P FGLR+ S K    ++   R+
Sbjct: 1   MKVLSRVDRYRYRKALFVGFTPSFGLRAVSSKKKLERVMPPRT 43

[Close]
BLAST of MELO3C030202 vs. NCBI nr
Match: KAA0046777.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 56.6 bits (135), Expect = 4.7e-04
Identity = 28/43 (65.12%), Postives = 32/43 (74.42%), Query Frame = 0 

Query: 186 MKVLSRVDRYRYRKALFVGFMPYFGLRSQSKKLMSSKIQTLRS 229
           MKVLSRVDRYRYRKALFVGF P FGLR+ S K    ++   R+
Sbjct: 1   MKVLSRVDRYRYRKALFVGFTPSFGLRAVSSKKKLERVMPPRT 43

[Close]
BLAST of MELO3C030202 vs. ExPASy TrEMBL
Match: A0A5A7TZX2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold4358G00210 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.7e-05
Identity = 32/49 (65.31%), Postives = 36/49 (73.47%), Query Frame = 0 

Query: 186 MKVLSRVDRYRYRKALFVGFMPYFGLRSQSKKLMSSKIQTLRSPPGRGF 235
           MKVLSRVDRYRYRKALFVGFMP FGLRS +    ++ +QT     GR F
Sbjct: 1   MKVLSRVDRYRYRKALFVGFMPSFGLRSHA----TTYLQTTPVESGRDF 45

[Close]
BLAST of MELO3C030202 vs. ExPASy TrEMBL
Match: A0A5A7SX06 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold57G002230 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.0e-04
Identity = 30/44 (68.18%), Postives = 34/44 (77.27%), Query Frame = 0 

Query: 186 MKVLSRVDRYRYRKALFVGFMPYFGLRSQSKKLMSSKIQTLRSP 230
           MKVLSRVDRYRYRKALFVGF P FGLR+ S K    K++ + SP
Sbjct: 1   MKVLSRVDRYRYRKALFVGFTPSFGLRAVSSK---KKLERVMSP 41

[Close]
BLAST of MELO3C030202 vs. ExPASy TrEMBL
Match: A0A5A7VC40 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold381G00550 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.8e-04
Identity = 27/30 (90.00%), Postives = 28/30 (93.33%), Query Frame = 0 

Query: 186 MKVLSRVDRYRYRKALFVGFMPYFGLRSQS 216
           MKVLSRVDRYRYRKALFVGFMP FGLRS +
Sbjct: 1   MKVLSRVDRYRYRKALFVGFMPSFGLRSHA 30

[Close]
BLAST of MELO3C030202 vs. ExPASy TrEMBL
Match: A0A5D3BQ19 (A-kinase anchor protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00110 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.3e-04
Identity = 28/43 (65.12%), Postives = 32/43 (74.42%), Query Frame = 0 

Query: 186 MKVLSRVDRYRYRKALFVGFMPYFGLRSQSKKLMSSKIQTLRS 229
           MKVLSRVDRYRYRKALFVGF P FGLR+ S K    ++   R+
Sbjct: 1   MKVLSRVDRYRYRKALFVGFTPSFGLRAVSSKKKLERVMPPRT 43

[Close]
BLAST of MELO3C030202 vs. ExPASy TrEMBL
Match: A0A5D3BS67 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold509G00050 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.3e-04
Identity = 28/43 (65.12%), Postives = 32/43 (74.42%), Query Frame = 0 

Query: 186 MKVLSRVDRYRYRKALFVGFMPYFGLRSQSKKLMSSKIQTLRS 229
           MKVLSRVDRYRYRKALFVGF P FGLR+ S K    ++   R+
Sbjct: 1   MKVLSRVDRYRYRKALFVGFTPSFGLRAVSSKKKLERVMPPRT 43

The following BLAST results are available for this feature:
BLAST of MELO3C030202 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0048700.15.6e-0565.31retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0035138.12.1e-0468.18DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
KAA0063169.13.6e-0490.00DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
KAA0054081.14.7e-0465.12DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
KAA0046777.14.7e-0465.12DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
BLAST of MELO3C030202 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C030202 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TZX22.7e-0565.31Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7SX061.0e-0468.18DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5A7VC401.8e-0490.00DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5D3BQ192.3e-0465.12A-kinase anchor protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff... [more]
A0A5D3BS672.3e-0465.12Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold50... [more]
BLAST of MELO3C030202 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 31..45
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 15..30
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..48

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C030202.1MELO3C030202.1mRNA