MELO3C030200.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C030200.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	CACTA en-spm transposon protein
Location	chr03: 16023836 .. 16025268 (+)
RNA-Seq Expression	MELO3C030200.jh1
Synteny	MELO3C030200.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTATTATTGTGTTAAAAATTCTGTAATATGTGTTAAGATTCGTTTTGGCTATCCTGCAGTTATGGTAGTCTTTAGTTCAATTCTAATAGTTTATTTCTTAGTAGTTTTGAATAAATTTGTTATTGATTTGGGTTTGAAGGGGTGGTAGTAGGATAGCTTGTAAGGTGGCGTTGTTGGAAGGGGTGAGTAGGATGCGAAGATCGAAGTTGTTTGTGGTTAATAATTAGGTTGTTTTGGCTATGCAGTTATGGTAGCCTCTGTAGTTTGAAGTTAGCTTTAGTGAAAATTTTGAGAGATTGTATATTCGGGGGAGTAAGTTTAGGATGTGAGAGGAGAAGAATATGTTTCTAATCAAACCTATTTATGTTTTAGGAATTTAAATGATGGACAAGGGTTGGATGTGAGTTGAAGTGCTACATTGCAGCCAATGGGCAGATTTCGATGACGATCGCCCCTGGTGCAGAGAGACCTATTTCTCCACACGTCGTTCACTTCAGCCAGGTGATACGCATATGTGGGCGAAAGATATTTTTCGTCCGCTGTCTTAAGTGAGCGGACGTAGGCAGAGAATACATCGAGGTCGTCAAGGGTGACCTTCAGGCAAGTCCACTACATACTTATGTTTTCATTTGAAACATATTTAAGTTAACCAAGCTAATGTGTTATTTTTGTAATGTGTAGCAATTTTTTGTGCTTGATTTCAATGATCAGGCAATGAATAGGTTTATTGAGCACCAAATGCTCAACACCTTTAAAGAGTTTCGGGGCGACTATCACAGGTATTTCAAAAAGTACAGCGACCTCAAGGAGGCTCGTGCCAACCCACCACACCTATTGGTAGGACGATGAGGATTGACACTACCTTTGTGACGACTATATGACCCGTGCATTCCCAGGTGAGCAACTGAACCTTTTGTCATGGTTAATTGTGATTTCAACTTTTAATATGTATAAGAAATAAACAATATAATTGTTTTCATGTAGGAGCAATCACTGAAGAACAAGGCTGCTAGACAAAAGCAGCCTTACAATCATAGCAAAGGGTCAAAGTCGTTTCTACAACGATAGCATGAGCTCGCTAAGCAAAGAGGGGAGTTGATCGACCGTGTGGATTTGTTTCGATAAACACACATTCGAGACGGGACATTCGTGTCCCTGGCTGTGGAGGATGCACATGTAAGTTATCCAAGCAACACTTCTACTCTTATTTGTCCGCTTGAATATATAATATATTTTTTACTTACTAAGATAGTTTCTAAATTTGTTGCAGCATCAAATGCTAAAACTTCAGTCCCAGCCTACCCCAAAGGGTAGTCAACCACTCTCTGGGGACGAGATATGCGAGATGGTGTTAGGTAGACGACCAGGCTACTCAAAAGGCCTTAGTTGGGGACTCAAGCCCAAGGCTCGCAAGACGACCAGCGAGTAG

mRNA sequence

ATGACTATTATTGTGTTAAAAATTCTGGGTGGTAGTAGGATAGCTTGTAAGGTGGCGTTGTTGGAAGGGGTGAGTAGGATGCGAAGATCGAAGTTGGTTGGATGTGAGTTGAAGTGCTACATTGCAGCCAATGGGCAGATTTCGATGACGATCGCCCCTGGTGCAGAGAGACCTATTTCTCCACACGTCGTTCACTTCAGCCAGCAATTTTTTGTGCTTGATTTCAATGATCAGGCAATGAATAGGTTTATTGAGCACCAAATGCTCAACACCTTTAAAGAGTTTCGGGGCGACTATCACAGGTATTTCAAAAAGTACAGCGACCTCAAGGAGGCTCGTGCCAACCCACCACACCTATTGGAGCAATCACTGAAGAACAAGGCTGCTAGACAAAAGCAGCCTTACAATCATAGCAAAGGAGGGGAGTTGATCGACCGTGTGGATTTGTTTCGATAAACACACATTCGAGACGGGACATTCGTGTCCCTGGCTGTGGAGGATGCACATCATCAAATGCTAAAACTTCAGTCCCAGCCTACCCCAAAGGGTAGTCAACCACTCTCTGGGGACGAGATATGCGAGATGGTGTTAGGTAGACGACCAGGCTACTCAAAAGGCCTTAGTTGGGGACTCAAGCCCAAGGCTCGCAAGACGACCAGCGAGTAG

Coding sequence (CDS)

ATGACTATTATTGTGTTAAAAATTCTGGGTGGTAGTAGGATAGCTTGTAAGGTGGCGTTGTTGGAAGGGGTGAGTAGGATGCGAAGATCGAAGTTGGTTGGATGTGAGTTGAAGTGCTACATTGCAGCCAATGGGCAGATTTCGATGACGATCGCCCCTGGTGCAGAGAGACCTATTTCTCCACACGTCGTTCACTTCAGCCAGCAATTTTTTGTGCTTGATTTCAATGATCAGGCAATGAATAGGTTTATTGAGCACCAAATGCTCAACACCTTTAAAGAGTTTCGGGGCGACTATCACAGGTATTTCAAAAAGTACAGCGACCTCAAGGAGGCTCGTGCCAACCCACCACACCTATTGGAGCAATCACTGAAGAACAAGGCTGCTAGACAAAAGCAGCCTTACAATCATAGCAAAGGAGGGGAGTTGATCGACCGTGTGGATTTGTTTCGATAA

Protein sequence

MTIIVLKILGGSRIACKVALLEGVSRMRRSKLVGCELKCYIAANGQISMTIAPGAERPISPHVVHFSQQFFVLDFNDQAMNRFIEHQMLNTFKEFRGDYHRYFKKYSDLKEARANPPHLLEQSLKNKAARQKQPYNHSKGGELIDRVDLFR

Homology

[Close]

BLAST of MELO3C030200.jh1 vs. NCBI nr
Match: KAA0047186.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK29742.1 CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 182 bits (461), Expect = 1.96e-55
Identity = 96/125 (76.80%), Postives = 101/125 (80.80%), Query Frame = 0


Query: 27  MRRSKLVGCELKCYIAANGQISMTIAPGAERPISPHVVHFSQQFFVLDFNDQAMNRFIEH 86
           MRRSKL       YIAANGQISMTIAPGA+RPISPHVVHFSQQFFVLDFNDQAMNRFIEH
Sbjct: 1   MRRSKL----FVRYIAANGQISMTIAPGAKRPISPHVVHFSQQFFVLDFNDQAMNRFIEH 60

Query: 87  QMLNTFKEFRGDYHRYFKKYSDLKEARANPPHLLEQSLKNKAARQKQPYNHSKGGELIDR 146
           QMLNTFKEFRGDYHRYFKKYSDL+EARANPPHLL +  K +             GELIDR
Sbjct: 61  QMLNTFKEFRGDYHRYFKKYSDLEEARANPPHLLHELAKQR-------------GELIDR 108

Query: 147 VDLFR 151
           V+LFR
Sbjct: 121 VNLFR 108

[Close]

BLAST of MELO3C030200.jh1 vs. NCBI nr
Match: KAA0042203.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 165 bits (417), Expect = 6.13e-47
Identity = 91/154 (59.09%), Postives = 107/154 (69.48%), Query Frame = 0


Query: 26  RMRRSKLVGCELKCYIAANGQISMTIAPGAERPISPHVVHFSQ-------------QFFV 85
           R  +S+L+  EL+ ++A NG+I MTIAPGAE+PISPH V FSQ             + FV
Sbjct: 42  RRAQSRLL--ELERHVAINGRIPMTIAPGAEKPISPHAVRFSQAIEYIEVVKGDLQRLFV 101

Query: 86  LDFNDQAMNRFIEHQMLNTFKEFRGDYHRYFKKYSDLKEARANPPHLLEQSLKNKAARQK 145
           LDFNDQAMNRF+EHQML TFKEF+ D HR+FKKYSD +EARANPP+ LEQS  NKAARQK
Sbjct: 102 LDFNDQAMNRFVEHQMLTTFKEFQADCHRHFKKYSDPEEARANPPNALEQSRTNKAARQK 161

Query: 146 QPYNHSKG---------------GELIDRVDLFR 151
           QPYNHS G               GE +DRV+LFR
Sbjct: 162 QPYNHSSGSKSFLQRQYELAERKGEPVDRVELFR 193

[Close]

BLAST of MELO3C030200.jh1 vs. NCBI nr
Match: KAA0033296.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 162 bits (411), Expect = 7.90e-46
Identity = 92/174 (52.87%), Postives = 108/174 (62.07%), Query Frame = 0


Query: 26  RMRRSKLVGCELKCYIAANGQISMTIAPGAERPISPHVVHFSQ----------------- 85
           R  +S+L+  EL+C++A NG+ISMTIAPGAE+PISPH V FSQ                 
Sbjct: 42  RRAQSRLL--ELECHVAINGRISMTIAPGAEKPISPHAVRFSQAIGVCVRKTFSVRCLKW 101

Query: 86  ----------------QFFVLDFNDQAMNRFIEHQMLNTFKEFRGDYHRYFKKYSDLKEA 145
                           + FVLDFNDQAMNRF+EHQML TFKEFR D HR+FKKYSD +EA
Sbjct: 102 ADVGREYIEVVKGDLQRLFVLDFNDQAMNRFVEHQMLTTFKEFRADCHRHFKKYSDPEEA 161

Query: 146 RANPPHLLEQSLKNKAARQKQPYNHSKG---------------GELIDRVDLFR 151
           RANPP+ LEQS  NK ARQKQPYNHS G               G+ +DRV+LFR
Sbjct: 162 RANPPNALEQSRTNKVARQKQPYNHSSGSKSFLQRQYELAERRGQPVDRVELFR 213

[Close]

BLAST of MELO3C030200.jh1 vs. NCBI nr
Match: KAA0056417.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK29103.1 CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 159 bits (402), Expect = 4.69e-45
Identity = 90/165 (54.55%), Postives = 104/165 (63.03%), Query Frame = 0


Query: 28  RRSKLVGCELKCYIAANGQISMTIAPGAERPISPHVVHFSQ------------------- 87
           RR++    EL+ ++A NG I MTIA GAE+PISPH V FSQ                   
Sbjct: 42  RRAQSRFLELERHVAINGHIPMTIAHGAEKPISPHAVRFSQTIGVCVRKTFLVRCLKWAD 101

Query: 88  -------QFFVLDFNDQAMNRFIEHQMLNTFKEFRGDYHRYFKKYSDLKEARANPPHLLE 147
                  +FFVLDFNDQAMNRF+EHQM+ TFKEFR D HR+FKKYSD +EARANPP+ LE
Sbjct: 102 VGREYIERFFVLDFNDQAMNRFVEHQMVTTFKEFRADCHRHFKKYSDPEEARANPPNALE 161

Query: 148 QSLKNKAARQKQPYNHSKGG---------------ELIDRVDLFR 151
           QS  NKAARQKQPYNHS G                EL+DRV+LFR
Sbjct: 162 QSRTNKAARQKQPYNHSSGSKSFLQRQYELAKRKKELVDRVELFR 206

[Close]

BLAST of MELO3C030200.jh1 vs. NCBI nr
Match: KAA0025427.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK04756.1 CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 158 bits (400), Expect = 9.87e-45
Identity = 90/174 (51.72%), Postives = 107/174 (61.49%), Query Frame = 0


Query: 25  SRMRRSKLVGCELKCYIAANGQISMTIAPGAERPISPHVVHFSQ---------------- 84
           +R  +S+L+  EL+C++A NG+I MTIAPGAE+P SPH V FSQ                
Sbjct: 28  TRRAQSRLL--ELECHVAINGRIPMTIAPGAEKPSSPHAVRFSQAIGVCVRKTFPIHCLK 87

Query: 85  -----------------QFFVLDFNDQAMNRFIEHQMLNTFKEFRGDYHRYFKKYSDLKE 144
                            + FVLDFNDQAMNRF+EHQML TFKEFR D HR+FKKYSD +E
Sbjct: 88  WADVGREYIEVVKGDLQRLFVLDFNDQAMNRFVEHQMLTTFKEFRADCHRHFKKYSDPEE 147

Query: 145 ARANPPHLLEQSLKNKAARQKQPYNHSKG---------------GELIDRVDLF 150
           ARANPP+ LEQS  NKAARQKQPYNHS G               G+ +DRV+LF
Sbjct: 148 ARANPPNALEQSRTNKAARQKQPYNHSSGSKSFLQRQYELAERRGQPVDRVELF 199

[Close]

BLAST of MELO3C030200.jh1 vs. ExPASy TrEMBL
Match: A0A5A7TYY7 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1280G00140 PE=4 SV=1)

HSP 1 Score: 182 bits (461), Expect = 9.51e-56
Identity = 96/125 (76.80%), Postives = 101/125 (80.80%), Query Frame = 0


Query: 27  MRRSKLVGCELKCYIAANGQISMTIAPGAERPISPHVVHFSQQFFVLDFNDQAMNRFIEH 86
           MRRSKL       YIAANGQISMTIAPGA+RPISPHVVHFSQQFFVLDFNDQAMNRFIEH
Sbjct: 1   MRRSKL----FVRYIAANGQISMTIAPGAKRPISPHVVHFSQQFFVLDFNDQAMNRFIEH 60

Query: 87  QMLNTFKEFRGDYHRYFKKYSDLKEARANPPHLLEQSLKNKAARQKQPYNHSKGGELIDR 146
           QMLNTFKEFRGDYHRYFKKYSDL+EARANPPHLL +  K +             GELIDR
Sbjct: 61  QMLNTFKEFRGDYHRYFKKYSDLEEARANPPHLLHELAKQR-------------GELIDR 108

Query: 147 VDLFR 151
           V+LFR
Sbjct: 121 VNLFR 108

[Close]

BLAST of MELO3C030200.jh1 vs. ExPASy TrEMBL
Match: A0A5A7TG53 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G007110 PE=4 SV=1)

HSP 1 Score: 165 bits (417), Expect = 2.97e-47
Identity = 91/154 (59.09%), Postives = 107/154 (69.48%), Query Frame = 0


Query: 26  RMRRSKLVGCELKCYIAANGQISMTIAPGAERPISPHVVHFSQ-------------QFFV 85
           R  +S+L+  EL+ ++A NG+I MTIAPGAE+PISPH V FSQ             + FV
Sbjct: 42  RRAQSRLL--ELERHVAINGRIPMTIAPGAEKPISPHAVRFSQAIEYIEVVKGDLQRLFV 101

Query: 86  LDFNDQAMNRFIEHQMLNTFKEFRGDYHRYFKKYSDLKEARANPPHLLEQSLKNKAARQK 145
           LDFNDQAMNRF+EHQML TFKEF+ D HR+FKKYSD +EARANPP+ LEQS  NKAARQK
Sbjct: 102 LDFNDQAMNRFVEHQMLTTFKEFQADCHRHFKKYSDPEEARANPPNALEQSRTNKAARQK 161

Query: 146 QPYNHSKG---------------GELIDRVDLFR 151
           QPYNHS G               GE +DRV+LFR
Sbjct: 162 QPYNHSSGSKSFLQRQYELAERKGEPVDRVELFR 193

[Close]

BLAST of MELO3C030200.jh1 vs. ExPASy TrEMBL
Match: A0A5A7STH7 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold845G001060 PE=4 SV=1)

HSP 1 Score: 162 bits (411), Expect = 3.83e-46
Identity = 92/174 (52.87%), Postives = 108/174 (62.07%), Query Frame = 0


Query: 26  RMRRSKLVGCELKCYIAANGQISMTIAPGAERPISPHVVHFSQ----------------- 85
           R  +S+L+  EL+C++A NG+ISMTIAPGAE+PISPH V FSQ                 
Sbjct: 42  RRAQSRLL--ELECHVAINGRISMTIAPGAEKPISPHAVRFSQAIGVCVRKTFSVRCLKW 101

Query: 86  ----------------QFFVLDFNDQAMNRFIEHQMLNTFKEFRGDYHRYFKKYSDLKEA 145
                           + FVLDFNDQAMNRF+EHQML TFKEFR D HR+FKKYSD +EA
Sbjct: 102 ADVGREYIEVVKGDLQRLFVLDFNDQAMNRFVEHQMLTTFKEFRADCHRHFKKYSDPEEA 161

Query: 146 RANPPHLLEQSLKNKAARQKQPYNHSKG---------------GELIDRVDLFR 151
           RANPP+ LEQS  NK ARQKQPYNHS G               G+ +DRV+LFR
Sbjct: 162 RANPPNALEQSRTNKVARQKQPYNHSSGSKSFLQRQYELAERRGQPVDRVELFR 213

[Close]

BLAST of MELO3C030200.jh1 vs. ExPASy TrEMBL
Match: A0A5A7UP83 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G002380 PE=4 SV=1)

HSP 1 Score: 159 bits (402), Expect = 2.27e-45
Identity = 90/165 (54.55%), Postives = 104/165 (63.03%), Query Frame = 0


Query: 28  RRSKLVGCELKCYIAANGQISMTIAPGAERPISPHVVHFSQ------------------- 87
           RR++    EL+ ++A NG I MTIA GAE+PISPH V FSQ                   
Sbjct: 42  RRAQSRFLELERHVAINGHIPMTIAHGAEKPISPHAVRFSQTIGVCVRKTFLVRCLKWAD 101

Query: 88  -------QFFVLDFNDQAMNRFIEHQMLNTFKEFRGDYHRYFKKYSDLKEARANPPHLLE 147
                  +FFVLDFNDQAMNRF+EHQM+ TFKEFR D HR+FKKYSD +EARANPP+ LE
Sbjct: 102 VGREYIERFFVLDFNDQAMNRFVEHQMVTTFKEFRADCHRHFKKYSDPEEARANPPNALE 161

Query: 148 QSLKNKAARQKQPYNHSKGG---------------ELIDRVDLFR 151
           QS  NKAARQKQPYNHS G                EL+DRV+LFR
Sbjct: 162 QSRTNKAARQKQPYNHSSGSKSFLQRQYELAKRKKELVDRVELFR 206

[Close]

BLAST of MELO3C030200.jh1 vs. ExPASy TrEMBL
Match: A0A5D3C2U8 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold68G00580 PE=4 SV=1)

HSP 1 Score: 158 bits (400), Expect = 4.78e-45
Identity = 90/174 (51.72%), Postives = 107/174 (61.49%), Query Frame = 0


Query: 25  SRMRRSKLVGCELKCYIAANGQISMTIAPGAERPISPHVVHFSQ---------------- 84
           +R  +S+L+  EL+C++A NG+I MTIAPGAE+P SPH V FSQ                
Sbjct: 28  TRRAQSRLL--ELECHVAINGRIPMTIAPGAEKPSSPHAVRFSQAIGVCVRKTFPIHCLK 87

Query: 85  -----------------QFFVLDFNDQAMNRFIEHQMLNTFKEFRGDYHRYFKKYSDLKE 144
                            + FVLDFNDQAMNRF+EHQML TFKEFR D HR+FKKYSD +E
Sbjct: 88  WADVGREYIEVVKGDLQRLFVLDFNDQAMNRFVEHQMLTTFKEFRADCHRHFKKYSDPEE 147

Query: 145 ARANPPHLLEQSLKNKAARQKQPYNHSKG---------------GELIDRVDLF 150
           ARANPP+ LEQS  NKAARQKQPYNHS G               G+ +DRV+LF
Sbjct: 148 ARANPPNALEQSRTNKAARQKQPYNHSSGSKSFLQRQYELAERRGQPVDRVELF 199

The following BLAST results are available for this feature:

BLAST of MELO3C030200.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0047186.1	1.96e-55	76.80	CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK29742.1 CACTA en-...	[more]
KAA0042203.1	6.13e-47	59.09	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]
KAA0033296.1	7.90e-46	52.87	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]
KAA0056417.1	4.69e-45	54.55	CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK29103.1 CACTA en-...	[more]
KAA0025427.1	9.87e-45	51.72	CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK04756.1 CACTA en-...	[more]

BLAST of MELO3C030200.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C030200.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TYY7	9.51e-56	76.80	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5A7TG53	2.97e-47	59.09	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5A7STH7	3.83e-46	52.87	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5A7UP83	2.27e-45	54.55	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5D3C2U8	4.78e-45	51.72	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]

BLAST of MELO3C030200.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C030200.jh1.t1	MELO3C030200.jh1.t1	mRNA