Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDSstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCACACAACGTTCGCAATGTACACTTTTTTAACAATTTTTCTATCAATACTCATAAGTGATCCTTTTTTTCCCCGCAGTCGTATCCTGCAGCGAAGGGACACCTGAACAAACCATTTCTGTATTACGACGAACTTACATATGTGTTCGGTCGCAATAGGGCGACGGGTCGGTTCGTTGAGACATTCGTCGACGTGGGGTCTAACGAGCTTGGCGGGTATGACGGATTTGATATATGGGATGGAAACGAGGAGTTCCCGCCTGTGTACAGCTAGGGGATTGACTTGTCACAGAACGATGTACGCGCATCACGACCTTCTCGCGCTTCAGAGGGTAGGATTGGATCGAGTGGATCCAAGAGGAAGAGGGGAAGTCAGCGAGAGGTGGATGTTGAAGACATACATCTGGCACTCGACCAAACAAACGAGCAACTAAGGATGATTGCGGAGTGGCATGCATGCGCCCTTGGCAATGACAACCATGTGCGCACGGAATTCTTCCGCATATTGCGTAAGATGCCAAAACTAACGAGTTTGGATAGGGGGCTATTGCAAAGGCATCTTCTATCTCGTATGGACGACCTTCAGGGTTTCATACTCATGCCTTAGGATGAGAGGGAGGGATTTTGTAGAATCCTCCTACGAGACATCACGAGATAG
mRNA sequence
ATGTCACACAACGTTCGCAATTCGTATCCTGCAGCGAAGGGACACCTGAACAAACCATTTCTGTATTACGACGAACTTACATATGTGTTCGGTCGCAATAGGGCGACGGGTCGGTTCGTTGAGACATTCGTCGACGTGGGGTCTAACGAGCTTGGCGGGTATGACGGATTTGATATATGGGATGGAAACGAGGAGTTCCCGCCTGTGATTGGATCGAGTGGATCCAAGAGGAAGAGGGGAAGTCAGCGAGAGGTGGATGTTGAAGACATACATCTGGCACTCGACCAAACAAACGAGCAACTAAGGATGATTGCGGAGTGGCATGCATGCGCCCTTGGCAATGACAACCATGTGCGCACGGAATTCTTCCGCATATTGCGTAAGATGCCAAAACTAACGAGTTTGGATAGGGGGCTATTGCAAAGGCATCTTCTATCTCGTATGGACGACCTTCAGGGTTTCATACTCATGCCTTAGGATGAGAGGGAGGGATTTTGTAGAATCCTCCTACGAGACATCACGAGATAG
Coding sequence (CDS)
ATGTCACACAACGTTCGCAATTCGTATCCTGCAGCGAAGGGACACCTGAACAAACCATTTCTGTATTACGACGAACTTACATATGTGTTCGGTCGCAATAGGGCGACGGGTCGGTTCGTTGAGACATTCGTCGACGTGGGGTCTAACGAGCTTGGCGGGTATGACGGATTTGATATATGGGATGGAAACGAGGAGTTCCCGCCTGTGATTGGATCGAGTGGATCCAAGAGGAAGAGGGGAAGTCAGCGAGAGGTGGATGTTGAAGACATACATCTGGCACTCGACCAAACAAACGAGCAACTAAGGATGATTGCGGAGTGGCATGCATGCGCCCTTGGCAATGACAACCATGTGCGCACGGAATTCTTCCGCATATTGCGTAAGATGCCAAAACTAACGAGTTTGGATAGGGGGCTATTGCAAAGGCATCTTCTATCTCGTATGGACGACCTTCAGGGTTTCATACTCATGCCTTAG
Protein sequence
MSHNVRNSYPAAKGHLNKPFLYYDELTYVFGRNRATGRFVETFVDVGSNELGGYDGFDIWDGNEEFPPVIGSSGSKRKRGSQREVDVEDIHLALDQTNEQLRMIAEWHACALGNDNHVRTEFFRILRKMPKLTSLDRGLLQRHLLSRMDDLQGFILMP
Homology
BLAST of MELO3C030177.jh1 vs. NCBI nr
Match:
KAA0049592.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK15951.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 264 bits (674), Expect = 7.86e-88
Identity = 135/151 (89.40%), Postives = 138/151 (91.39%), Query Frame = 0
Query: 8 SYPAAKGHLNKPFLYYDELTYVFGRNRATGRFVETFVDVGSNELGGYDGFDIWDGNEEFP 67
SYPA KGHLNKPFLYYDELTYVFGRNRATGRF ETFVDV SNELGGYDGFDI +G E
Sbjct: 11 SYPATKGHLNKPFLYYDELTYVFGRNRATGRFAETFVDVESNELGGYDGFDI-EGRIE-- 70
Query: 68 PVIGSSGSKRKRGSQREVDVEDIHLALDQTNEQLRMIAEWHACALGNDNHVRTEFFRILR 127
SSGSKRKRGSQREVDVE+IHLALDQTNEQLRMIAEWHACALGNDNHVRTEFFR LR
Sbjct: 71 ----SSGSKRKRGSQREVDVENIHLALDQTNEQLRMIAEWHACALGNDNHVRTEFFRTLR 130
Query: 128 KMPKLTSLDRGLLQRHLLSRMDDLQGFILMP 158
KMP+LTSLDRGLLQRHLLSRMDDLQGFILMP
Sbjct: 131 KMPELTSLDRGLLQRHLLSRMDDLQGFILMP 154
BLAST of MELO3C030177.jh1 vs. NCBI nr
Match:
KAA0060132.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 248 bits (633), Expect = 9.32e-81
Identity = 124/151 (82.12%), Postives = 133/151 (88.08%), Query Frame = 0
Query: 8 SYPAAKGHLNKPFLYYDELTYVFGRNRATGRFVETFVDVGSNELGGYDGFDIWDGNEEFP 67
S+PAAKG LN+PF YYDELTYVFGR+RAT RF ETF DV SNE GGYD FD+ DGNEEFP
Sbjct: 61 SHPAAKGLLNRPFPYYDELTYVFGRDRATDRFAETFADVESNEPGGYDKFDMGDGNEEFP 120
Query: 68 PVIGSSGSKRKRGSQREVDVEDIHLALDQTNEQLRMIAEWHACALGNDNHVRTEFFRILR 127
PV GSSGSKRKR SQR++DVE IHLALDQTNEQLRMIAEW A L NDNHVRTEFFRILR
Sbjct: 121 PVTGSSGSKRKRDSQRDLDVEAIHLALDQTNEQLRMIAEWPARTLANDNHVRTEFFRILR 180
Query: 128 KMPKLTSLDRGLLQRHLLSRMDDLQGFILMP 158
+MP+LTSLDR LLQRHLLSRMDDL GF+LMP
Sbjct: 181 EMPELTSLDRALLQRHLLSRMDDLWGFVLMP 211
BLAST of MELO3C030177.jh1 vs. NCBI nr
Match:
KAA0065929.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 246 bits (628), Expect = 3.09e-79
Identity = 125/156 (80.13%), Postives = 134/156 (85.90%), Query Frame = 0
Query: 4 NVRNSYPAAKGHLNKPFLYYDELTYVFGRNRATGRFVETFVDVGSNELGG-YDGFDIWDG 63
N S+PAAKG LNKPF YYDELTYVFGR+RATGRF ETF DVGSNELGG YD FDI DG
Sbjct: 110 NWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNELGGGYDRFDIGDG 169
Query: 64 NEEFPPVIGSSGSKRKRGSQREVDVEDIHLALDQTNEQLRMIAEWHACALGNDNHVRTEF 123
NE+FPP+ GSSGSKRKRGSQR+ DVE IHLALDQTNEQLR IAEW + L NDNHVRTEF
Sbjct: 170 NEDFPPMTGSSGSKRKRGSQRDFDVEAIHLALDQTNEQLRQIAEWPSRNLANDNHVRTEF 229
Query: 124 FRILRKMPKLTSLDRGLLQRHLLSRMDDLQGFILMP 158
FRILR+MP+LTSLDR LLQ HLLS MDDL GF+LMP
Sbjct: 230 FRILREMPELTSLDRALLQMHLLSHMDDLWGFVLMP 265
BLAST of MELO3C030177.jh1 vs. NCBI nr
Match:
KAA0046819.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 243 bits (620), Expect = 2.94e-78
Identity = 120/147 (81.63%), Postives = 130/147 (88.44%), Query Frame = 0
Query: 12 AKGHLNKPFLYYDELTYVFGRNRATGRFVETFVDVGSNELGGYDGFDIWDGNEEFPPVIG 71
+G NKPFLYY ELTYVF R+R TGRF ETFVDVGSNE GGYDGFD+ DGNE+FPP+ G
Sbjct: 82 GEGTPNKPFLYYVELTYVFDRDRVTGRFAETFVDVGSNEPGGYDGFDMGDGNEKFPPMTG 141
Query: 72 SSGSKRKRGSQREVDVEDIHLALDQTNEQLRMIAEWHACALGNDNHVRTEFFRILRKMPK 131
SSGSKRKRG+QR+VDVE IHLALDQTNEQLRMIAEW ALGNDNHVRTEFFRILR+MP+
Sbjct: 142 SSGSKRKRGNQRKVDVEGIHLALDQTNEQLRMIAEWPVHALGNDNHVRTEFFRILREMPE 201
Query: 132 LTSLDRGLLQRHLLSRMDDLQGFILMP 158
LTSLD LLQRHLLS MDDL+GFILMP
Sbjct: 202 LTSLDNALLQRHLLSHMDDLRGFILMP 228
BLAST of MELO3C030177.jh1 vs. NCBI nr
Match:
KAA0052286.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK01852.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 242 bits (617), Expect = 5.34e-78
Identity = 124/156 (79.49%), Postives = 132/156 (84.62%), Query Frame = 0
Query: 4 NVRNSYPAAKGHLNKPFLYYDELTYVFGRNRATGRFVETFVDVGSNELGG-YDGFDIWDG 63
N S+P AKG LNKPFLYYDELTYVFGR+RATGRF ETF DV SNE GG YD FD+ D
Sbjct: 79 NWVRSHPTAKGLLNKPFLYYDELTYVFGRDRATGRFAETFADVESNEPGGGYDRFDMGDE 138
Query: 64 NEEFPPVIGSSGSKRKRGSQREVDVEDIHLALDQTNEQLRMIAEWHACALGNDNHVRTEF 123
NEEF PV GSSGSKRKRGSQR+ D+E IHLALDQTNEQLR IAEW A L NDNHVRTEF
Sbjct: 139 NEEFLPVTGSSGSKRKRGSQRDFDIEAIHLALDQTNEQLRQIAEWPARNLANDNHVRTEF 198
Query: 124 FRILRKMPKLTSLDRGLLQRHLLSRMDDLQGFILMP 158
FRILR+MP+LTSLDR L QRHLLSRMDDLQGF+LMP
Sbjct: 199 FRILREMPELTSLDRALFQRHLLSRMDDLQGFVLMP 234
BLAST of MELO3C030177.jh1 vs. ExPASy TrEMBL
Match:
A0A5A7U1E8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00660 PE=4 SV=1)
HSP 1 Score: 264 bits (674), Expect = 3.81e-88
Identity = 135/151 (89.40%), Postives = 138/151 (91.39%), Query Frame = 0
Query: 8 SYPAAKGHLNKPFLYYDELTYVFGRNRATGRFVETFVDVGSNELGGYDGFDIWDGNEEFP 67
SYPA KGHLNKPFLYYDELTYVFGRNRATGRF ETFVDV SNELGGYDGFDI +G E
Sbjct: 11 SYPATKGHLNKPFLYYDELTYVFGRNRATGRFAETFVDVESNELGGYDGFDI-EGRIE-- 70
Query: 68 PVIGSSGSKRKRGSQREVDVEDIHLALDQTNEQLRMIAEWHACALGNDNHVRTEFFRILR 127
SSGSKRKRGSQREVDVE+IHLALDQTNEQLRMIAEWHACALGNDNHVRTEFFR LR
Sbjct: 71 ----SSGSKRKRGSQREVDVENIHLALDQTNEQLRMIAEWHACALGNDNHVRTEFFRTLR 130
Query: 128 KMPKLTSLDRGLLQRHLLSRMDDLQGFILMP 158
KMP+LTSLDRGLLQRHLLSRMDDLQGFILMP
Sbjct: 131 KMPELTSLDRGLLQRHLLSRMDDLQGFILMP 154
BLAST of MELO3C030177.jh1 vs. ExPASy TrEMBL
Match:
A0A5A7UWC3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold39G00520 PE=4 SV=1)
HSP 1 Score: 248 bits (633), Expect = 4.51e-81
Identity = 124/151 (82.12%), Postives = 133/151 (88.08%), Query Frame = 0
Query: 8 SYPAAKGHLNKPFLYYDELTYVFGRNRATGRFVETFVDVGSNELGGYDGFDIWDGNEEFP 67
S+PAAKG LN+PF YYDELTYVFGR+RAT RF ETF DV SNE GGYD FD+ DGNEEFP
Sbjct: 61 SHPAAKGLLNRPFPYYDELTYVFGRDRATDRFAETFADVESNEPGGYDKFDMGDGNEEFP 120
Query: 68 PVIGSSGSKRKRGSQREVDVEDIHLALDQTNEQLRMIAEWHACALGNDNHVRTEFFRILR 127
PV GSSGSKRKR SQR++DVE IHLALDQTNEQLRMIAEW A L NDNHVRTEFFRILR
Sbjct: 121 PVTGSSGSKRKRDSQRDLDVEAIHLALDQTNEQLRMIAEWPARTLANDNHVRTEFFRILR 180
Query: 128 KMPKLTSLDRGLLQRHLLSRMDDLQGFILMP 158
+MP+LTSLDR LLQRHLLSRMDDL GF+LMP
Sbjct: 181 EMPELTSLDRALLQRHLLSRMDDLWGFVLMP 211
BLAST of MELO3C030177.jh1 vs. ExPASy TrEMBL
Match:
A0A5A7VKT2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold538G001150 PE=4 SV=1)
HSP 1 Score: 246 bits (628), Expect = 1.49e-79
Identity = 125/156 (80.13%), Postives = 134/156 (85.90%), Query Frame = 0
Query: 4 NVRNSYPAAKGHLNKPFLYYDELTYVFGRNRATGRFVETFVDVGSNELGG-YDGFDIWDG 63
N S+PAAKG LNKPF YYDELTYVFGR+RATGRF ETF DVGSNELGG YD FDI DG
Sbjct: 110 NWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNELGGGYDRFDIGDG 169
Query: 64 NEEFPPVIGSSGSKRKRGSQREVDVEDIHLALDQTNEQLRMIAEWHACALGNDNHVRTEF 123
NE+FPP+ GSSGSKRKRGSQR+ DVE IHLALDQTNEQLR IAEW + L NDNHVRTEF
Sbjct: 170 NEDFPPMTGSSGSKRKRGSQRDFDVEAIHLALDQTNEQLRQIAEWPSRNLANDNHVRTEF 229
Query: 124 FRILRKMPKLTSLDRGLLQRHLLSRMDDLQGFILMP 158
FRILR+MP+LTSLDR LLQ HLLS MDDL GF+LMP
Sbjct: 230 FRILREMPELTSLDRALLQMHLLSHMDDLWGFVLMP 265
BLAST of MELO3C030177.jh1 vs. ExPASy TrEMBL
Match:
A0A5A7U005 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold216G001120 PE=4 SV=1)
HSP 1 Score: 243 bits (620), Expect = 1.42e-78
Identity = 120/147 (81.63%), Postives = 130/147 (88.44%), Query Frame = 0
Query: 12 AKGHLNKPFLYYDELTYVFGRNRATGRFVETFVDVGSNELGGYDGFDIWDGNEEFPPVIG 71
+G NKPFLYY ELTYVF R+R TGRF ETFVDVGSNE GGYDGFD+ DGNE+FPP+ G
Sbjct: 82 GEGTPNKPFLYYVELTYVFDRDRVTGRFAETFVDVGSNEPGGYDGFDMGDGNEKFPPMTG 141
Query: 72 SSGSKRKRGSQREVDVEDIHLALDQTNEQLRMIAEWHACALGNDNHVRTEFFRILRKMPK 131
SSGSKRKRG+QR+VDVE IHLALDQTNEQLRMIAEW ALGNDNHVRTEFFRILR+MP+
Sbjct: 142 SSGSKRKRGNQRKVDVEGIHLALDQTNEQLRMIAEWPVHALGNDNHVRTEFFRILREMPE 201
Query: 132 LTSLDRGLLQRHLLSRMDDLQGFILMP 158
LTSLD LLQRHLLS MDDL+GFILMP
Sbjct: 202 LTSLDNALLQRHLLSHMDDLRGFILMP 228
BLAST of MELO3C030177.jh1 vs. ExPASy TrEMBL
Match:
A0A5A7UDL5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G001010 PE=4 SV=1)
HSP 1 Score: 242 bits (617), Expect = 2.59e-78
Identity = 124/156 (79.49%), Postives = 132/156 (84.62%), Query Frame = 0
Query: 4 NVRNSYPAAKGHLNKPFLYYDELTYVFGRNRATGRFVETFVDVGSNELGG-YDGFDIWDG 63
N S+P AKG LNKPFLYYDELTYVFGR+RATGRF ETF DV SNE GG YD FD+ D
Sbjct: 79 NWVRSHPTAKGLLNKPFLYYDELTYVFGRDRATGRFAETFADVESNEPGGGYDRFDMGDE 138
Query: 64 NEEFPPVIGSSGSKRKRGSQREVDVEDIHLALDQTNEQLRMIAEWHACALGNDNHVRTEF 123
NEEF PV GSSGSKRKRGSQR+ D+E IHLALDQTNEQLR IAEW A L NDNHVRTEF
Sbjct: 139 NEEFLPVTGSSGSKRKRGSQRDFDIEAIHLALDQTNEQLRQIAEWPARNLANDNHVRTEF 198
Query: 124 FRILRKMPKLTSLDRGLLQRHLLSRMDDLQGFILMP 158
FRILR+MP+LTSLDR L QRHLLSRMDDLQGF+LMP
Sbjct: 199 FRILREMPELTSLDRALFQRHLLSRMDDLQGFVLMP 234
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAA0049592.1 | 7.86e-88 | 89.40 | retrotransposon protein [Cucumis melo var. makuwa] >TYK15951.1 retrotransposon p... | [more] |
| KAA0060132.1 | 9.32e-81 | 82.12 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
| KAA0065929.1 | 3.09e-79 | 80.13 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
| KAA0046819.1 | 2.94e-78 | 81.63 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
| KAA0052286.1 | 5.34e-78 | 79.49 | retrotransposon protein [Cucumis melo var. makuwa] >TYK01852.1 retrotransposon p... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7U1E8 | 3.81e-88 | 89.40 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A5A7UWC3 | 4.51e-81 | 82.12 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| A0A5A7VKT2 | 1.49e-79 | 80.13 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| A0A5A7U005 | 1.42e-78 | 81.63 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| A0A5A7UDL5 | 2.59e-78 | 79.49 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
