MELO3C030177 (gene) Melon (DHL92) v4

Overview
NameMELO3C030177
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionRetrotransposon protein
Locationchr01: 7237797 .. 7238454 (+)
RNA-Seq ExpressionMELO3C030177
SyntenyMELO3C030177
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACGTCACATAACGTTCGCAATGTACATTTACTTCACAATTTTTCTATTAGTACTCATAAGTGATTTTTTTTTCCCCGCAGTCACATCCTGCAGCGAAAGGACTCCTGAACAAACCGTTTTCGTATTACGACGAACTTACATATATGTTAGATCGCGGTAGGACGACGGGTCAGTTCGCTGAGACATTCACTGACGTGAGGTCTAACGAGTCTGGCGGGTATGAAGGATTTGATATGGCGGATGGAAACGAGGAGTTCCCGCCCGTGTACAGCCAGGGGATTGACCTGTCGCAGGACAATGTACGCGCATCACGACCTTCTCGCGCTTCAGAGAATAGGACCGGATCGAGTGGATCCAAGAGAAAGAGGGGAAGTCAGCGAGAGGTGGATGTTGAAGGCATACATTTGGCGCTCAACCAAACAAACGAGCAACTCAGGATGATTGCGGAGTGGCCTGCACGCGCCCTTGCCAATGACAACCATGTACCCACGAAATTCTTCTGCATATTGAGTGAGATGCCAGAACTAACGAGTTTGGATAGGGCGCTATTGCAAAGGCATCTTCTGTCTCGTATGGACGACCTTCAAGGTTTCGTACTCATGCCTGAGGATGAGAGGGAGGGATTTTGTAGAGTCCTCCTACGGACATGACGAGATAG

mRNA sequence

ACGTCACATAACGTTCGCAATTCACATCCTGCAGCGAAAGGACTCCTGAACAAACCGTTTTCGTATTACGACGAACTTACATATATGTTAGATCGCGGTAGGACGACGGGTCAGTTCGCTGAGACATTCACTGACGTGAGGTCTAACGAGTCTGGCGGGTATGAAGGATTTGATATGGCGGATGGAAACGAGGAGTTCCCGCCCGTGACCGGATCGAGTGGATCCAAGAGAAAGAGGGGAAGTCAGCGAGAGGTGGATGTTGAAGGCATACATTTGGCGCTCAACCAAACAAACGAGCAACTCAGGATGATTGCGGAGTGGCCTGCACGCGCCCTTGCCAATGACAACCATGTACCCACGAAATTCTTCTGCATATTGAGTGAGATGCCAGAACTAACGAGTTTGGATAGGGCGCTATTGCAAAGGCATCTTCTGTCTCGTATGGACGACCTTCAAGGTTTCGTACTCATGCCTGAGGATGAGAGGGAGGGATTTTGTAGAGTCCTCCTACGGACATGACGAGATAG

Coding sequence (CDS)

ATGTTAGATCGCGGTAGGACGACGGGTCAGTTCGCTGAGACATTCACTGACGTGAGGTCTAACGAGTCTGGCGGGTATGAAGGATTTGATATGGCGGATGGAAACGAGGAGTTCCCGCCCGTGACCGGATCGAGTGGATCCAAGAGAAAGAGGGGAAGTCAGCGAGAGGTGGATGTTGAAGGCATACATTTGGCGCTCAACCAAACAAACGAGCAACTCAGGATGATTGCGGAGTGGCCTGCACGCGCCCTTGCCAATGACAACCATGTACCCACGAAATTCTTCTGCATATTGAGTGAGATGCCAGAACTAACGAGTTTGGATAGGGCGCTATTGCAAAGGCATCTTCTGTCTCGTATGGACGACCTTCAAGGTTTCGTACTCATGCCTGAGGATGAGAGGGAGGGATTTTGTAGAGTCCTCCTACGGACATGA

Protein sequence

MLDRGRTTGQFAETFTDVRSNESGGYEGFDMADGNEEFPPVTGSSGSKRKRGSQREVDVEGIHLALNQTNEQLRMIAEWPARALANDNHVPTKFFCILSEMPELTSLDRALLQRHLLSRMDDLQGFVLMPEDEREGFCRVLLRT
Homology
[Close]
BLAST of MELO3C030177 vs. NCBI nr
Match: KAA0046819.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 238.8 bits (608), Expect = 2.9e-59
Identity = 115/141 (81.56%), Postives = 126/141 (89.36%), Query Frame = 0 

Query: 1   MLDRGRTTGQFAETFTDVRSNESGGYEGFDMADGNEEFPPVTGSSGSKRKRGSQREVDVE 60
           + DR R TG+FAETF DV SNE GGY+GFDM DGNE+FPP+TGSSGSKRKRG+QR+VDVE
Sbjct: 99  VFDRDRVTGRFAETFVDVGSNEPGGYDGFDMGDGNEKFPPMTGSSGSKRKRGNQRKVDVE 158

Query: 61  GIHLALNQTNEQLRMIAEWPARALANDNHVPTKFFCILSEMPELTSLDRALLQRHLLSRM 120
           GIHLAL+QTNEQLRMIAEWP  AL NDNHV T+FF IL EMPELTSLD ALLQRHLLS M
Sbjct: 159 GIHLALDQTNEQLRMIAEWPVHALGNDNHVRTEFFRILREMPELTSLDNALLQRHLLSHM 218

Query: 121 DDLQGFVLMPEDEREGFCRVL 142
           DDL+GF+LMPEDEREGFCRVL
Sbjct: 219 DDLRGFILMPEDEREGFCRVL 239

[Close]
BLAST of MELO3C030177 vs. NCBI nr
Match: KAA0060132.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 238.8 bits (608), Expect = 2.9e-59
Identity = 119/140 (85.00%), Postives = 125/140 (89.29%), Query Frame = 0 

Query: 4   RGRTTGQFAETFTDVRSNESGGYEGFDMADGNEEFPPVTGSSGSKRKRGSQREVDVEGIH 63
           R R T +FAETF DV SNE GGY+ FDM DGNEEFPPVTGSSGSKRKR SQR++DVE IH
Sbjct: 85  RDRATDRFAETFADVESNEPGGYDKFDMGDGNEEFPPVTGSSGSKRKRDSQRDLDVEAIH 144

Query: 64  LALNQTNEQLRMIAEWPARALANDNHVPTKFFCILSEMPELTSLDRALLQRHLLSRMDDL 123
           LAL+QTNEQLRMIAEWPAR LANDNHV T+FF IL EMPELTSLDRALLQRHLLSRMDDL
Sbjct: 145 LALDQTNEQLRMIAEWPARTLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDL 204

Query: 124 QGFVLMPEDEREGFCRVLLR 144
            GFVLMPEDEREGFCRVLLR
Sbjct: 205 WGFVLMPEDEREGFCRVLLR 224

[Close]
BLAST of MELO3C030177 vs. NCBI nr
Match: TYK14238.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 236.9 bits (603), Expect = 1.1e-58
Identity = 116/134 (86.57%), Postives = 122/134 (91.04%), Query Frame = 0 

Query: 10  QFAETFTDVRSNESGGYEGFDMADGNEEFPPVTGSSGSKRKRGSQREVDVEGIHLALNQT 69
           +FAETF DV SNE  GY+GFDM DGNEEFPP TGSSGSKRKRGSQREVDVEGIH+ALNQT
Sbjct: 99  RFAETFADVGSNEPDGYDGFDMGDGNEEFPPETGSSGSKRKRGSQREVDVEGIHMALNQT 158

Query: 70  NEQLRMIAEWPARALANDNHVPTKFFCILSEMPELTSLDRALLQRHLLSRMDDLQGFVLM 129
           NEQLRMIAEWP RALANDNHV T+FFCIL EMPEL SLDRALLQRHLLSRMDDLQGF L+
Sbjct: 159 NEQLRMIAEWPTRALANDNHVRTEFFCILREMPELMSLDRALLQRHLLSRMDDLQGFALV 218

Query: 130 PEDEREGFCRVLLR 144
           PEDEREGF +VLLR
Sbjct: 219 PEDEREGFFKVLLR 232

[Close]
BLAST of MELO3C030177 vs. NCBI nr
Match: KAA0059933.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK24879.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 233.0 bits (593), Expect = 1.6e-57
Identity = 123/162 (75.93%), Postives = 127/162 (78.40%), Query Frame = 0 

Query: 6   RTTGQFAETFTDVRSNESGGYEGFDMADGNEEFPPV------------------------ 65
           R TGQFAETFTDV SNE GGYEGFDMADGNEEFP V                        
Sbjct: 92  RATGQFAETFTDVGSNEPGGYEGFDMADGNEEFPSVYSQGIDMSLDDVRASRPSCASEGR 151

Query: 66  TGSSGSKRKRGSQREVDVEGIHLALNQTNEQLRMIAEWPARALANDNHVPTKFFCILSEM 125
           TGSSGSKRKRGSQREVDVEGIHLAL+QTNEQLRMI EWPAR L NDNHV T+FF IL EM
Sbjct: 152 TGSSGSKRKRGSQREVDVEGIHLALDQTNEQLRMIEEWPARVLVNDNHVRTEFFRILCEM 211

Query: 126 PELTSLDRALLQRHLLSRMDDLQGFVLMPEDEREGFCRVLLR 144
           PELTSLDRALLQRHLLSRMDDL+GF+LMPEDEREGF RVLLR
Sbjct: 212 PELTSLDRALLQRHLLSRMDDLRGFILMPEDEREGFSRVLLR 253

[Close]
BLAST of MELO3C030177 vs. NCBI nr
Match: TYK30732.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 229.6 bits (584), Expect = 1.8e-56
Identity = 114/143 (79.72%), Postives = 125/143 (87.41%), Query Frame = 0 

Query: 1   MLDRGRTTGQFAETFTDVRSNESGGYEGFDMADGNEEFPPVTGSSGSKRKRGSQREVDVE 60
           + DR R  G+FAETFTDV SNE  GY+GFDM DG +EFP +T SSGSKRKR SQRE+DVE
Sbjct: 93  VFDRDRAIGRFAETFTDVGSNEPDGYDGFDMEDGKKEFPSMTRSSGSKRKRESQREMDVE 152

Query: 61  GIHLALNQTNEQLRMIAEWPARALANDNHVPTKFFCILSEMPELTSLDRALLQRHLLSRM 120
           GIHLAL+Q+NEQLRMIAEWPA AL NDNHV TKFF IL EMPELTSLDR LLQRHLLSRM
Sbjct: 153 GIHLALDQSNEQLRMIAEWPACALVNDNHVCTKFFLILREMPELTSLDRVLLQRHLLSRM 212

Query: 121 DDLQGFVLMPEDEREGFCRVLLR 144
           DDL+GFVLMP+DEREGFCRVLL+
Sbjct: 213 DDLRGFVLMPDDEREGFCRVLLQ 235

[Close]
BLAST of MELO3C030177 vs. ExPASy TrEMBL
Match: A0A5A7U005 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold216G001120 PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 1.4e-59
Identity = 115/141 (81.56%), Postives = 126/141 (89.36%), Query Frame = 0 

Query: 1   MLDRGRTTGQFAETFTDVRSNESGGYEGFDMADGNEEFPPVTGSSGSKRKRGSQREVDVE 60
           + DR R TG+FAETF DV SNE GGY+GFDM DGNE+FPP+TGSSGSKRKRG+QR+VDVE
Sbjct: 99  VFDRDRVTGRFAETFVDVGSNEPGGYDGFDMGDGNEKFPPMTGSSGSKRKRGNQRKVDVE 158

Query: 61  GIHLALNQTNEQLRMIAEWPARALANDNHVPTKFFCILSEMPELTSLDRALLQRHLLSRM 120
           GIHLAL+QTNEQLRMIAEWP  AL NDNHV T+FF IL EMPELTSLD ALLQRHLLS M
Sbjct: 159 GIHLALDQTNEQLRMIAEWPVHALGNDNHVRTEFFRILREMPELTSLDNALLQRHLLSHM 218

Query: 121 DDLQGFVLMPEDEREGFCRVL 142
           DDL+GF+LMPEDEREGFCRVL
Sbjct: 219 DDLRGFILMPEDEREGFCRVL 239

[Close]
BLAST of MELO3C030177 vs. ExPASy TrEMBL
Match: A0A5A7UWC3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold39G00520 PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 1.4e-59
Identity = 119/140 (85.00%), Postives = 125/140 (89.29%), Query Frame = 0 

Query: 4   RGRTTGQFAETFTDVRSNESGGYEGFDMADGNEEFPPVTGSSGSKRKRGSQREVDVEGIH 63
           R R T +FAETF DV SNE GGY+ FDM DGNEEFPPVTGSSGSKRKR SQR++DVE IH
Sbjct: 85  RDRATDRFAETFADVESNEPGGYDKFDMGDGNEEFPPVTGSSGSKRKRDSQRDLDVEAIH 144

Query: 64  LALNQTNEQLRMIAEWPARALANDNHVPTKFFCILSEMPELTSLDRALLQRHLLSRMDDL 123
           LAL+QTNEQLRMIAEWPAR LANDNHV T+FF IL EMPELTSLDRALLQRHLLSRMDDL
Sbjct: 145 LALDQTNEQLRMIAEWPARTLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDL 204

Query: 124 QGFVLMPEDEREGFCRVLLR 144
            GFVLMPEDEREGFCRVLLR
Sbjct: 205 WGFVLMPEDEREGFCRVLLR 224

[Close]
BLAST of MELO3C030177 vs. ExPASy TrEMBL
Match: A0A5D3CSR0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1121G00200 PE=4 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 5.3e-59
Identity = 116/134 (86.57%), Postives = 122/134 (91.04%), Query Frame = 0 

Query: 10  QFAETFTDVRSNESGGYEGFDMADGNEEFPPVTGSSGSKRKRGSQREVDVEGIHLALNQT 69
           +FAETF DV SNE  GY+GFDM DGNEEFPP TGSSGSKRKRGSQREVDVEGIH+ALNQT
Sbjct: 99  RFAETFADVGSNEPDGYDGFDMGDGNEEFPPETGSSGSKRKRGSQREVDVEGIHMALNQT 158

Query: 70  NEQLRMIAEWPARALANDNHVPTKFFCILSEMPELTSLDRALLQRHLLSRMDDLQGFVLM 129
           NEQLRMIAEWP RALANDNHV T+FFCIL EMPEL SLDRALLQRHLLSRMDDLQGF L+
Sbjct: 159 NEQLRMIAEWPTRALANDNHVRTEFFCILREMPELMSLDRALLQRHLLSRMDDLQGFALV 218

Query: 130 PEDEREGFCRVLLR 144
           PEDEREGF +VLLR
Sbjct: 219 PEDEREGFFKVLLR 232

[Close]
BLAST of MELO3C030177 vs. ExPASy TrEMBL
Match: A0A5A7UVE5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold184G001500 PE=4 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 7.7e-58
Identity = 123/162 (75.93%), Postives = 127/162 (78.40%), Query Frame = 0 

Query: 6   RTTGQFAETFTDVRSNESGGYEGFDMADGNEEFPPV------------------------ 65
           R TGQFAETFTDV SNE GGYEGFDMADGNEEFP V                        
Sbjct: 92  RATGQFAETFTDVGSNEPGGYEGFDMADGNEEFPSVYSQGIDMSLDDVRASRPSCASEGR 151

Query: 66  TGSSGSKRKRGSQREVDVEGIHLALNQTNEQLRMIAEWPARALANDNHVPTKFFCILSEM 125
           TGSSGSKRKRGSQREVDVEGIHLAL+QTNEQLRMI EWPAR L NDNHV T+FF IL EM
Sbjct: 152 TGSSGSKRKRGSQREVDVEGIHLALDQTNEQLRMIEEWPARVLVNDNHVRTEFFRILCEM 211

Query: 126 PELTSLDRALLQRHLLSRMDDLQGFVLMPEDEREGFCRVLLR 144
           PELTSLDRALLQRHLLSRMDDL+GF+LMPEDEREGF RVLLR
Sbjct: 212 PELTSLDRALLQRHLLSRMDDLRGFILMPEDEREGFSRVLLR 253

[Close]
BLAST of MELO3C030177 vs. ExPASy TrEMBL
Match: A0A5D3E4A2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold343G00650 PE=4 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 8.5e-57
Identity = 114/143 (79.72%), Postives = 125/143 (87.41%), Query Frame = 0 

Query: 1   MLDRGRTTGQFAETFTDVRSNESGGYEGFDMADGNEEFPPVTGSSGSKRKRGSQREVDVE 60
           + DR R  G+FAETFTDV SNE  GY+GFDM DG +EFP +T SSGSKRKR SQRE+DVE
Sbjct: 93  VFDRDRAIGRFAETFTDVGSNEPDGYDGFDMEDGKKEFPSMTRSSGSKRKRESQREMDVE 152

Query: 61  GIHLALNQTNEQLRMIAEWPARALANDNHVPTKFFCILSEMPELTSLDRALLQRHLLSRM 120
           GIHLAL+Q+NEQLRMIAEWPA AL NDNHV TKFF IL EMPELTSLDR LLQRHLLSRM
Sbjct: 153 GIHLALDQSNEQLRMIAEWPACALVNDNHVCTKFFLILREMPELTSLDRVLLQRHLLSRM 212

Query: 121 DDLQGFVLMPEDEREGFCRVLLR 144
           DDL+GFVLMP+DEREGFCRVLL+
Sbjct: 213 DDLRGFVLMPDDEREGFCRVLLQ 235

The following BLAST results are available for this feature:
BLAST of MELO3C030177 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0046819.12.9e-5981.56retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0060132.12.9e-5985.00retrotransposon protein [Cucumis melo var. makuwa][more]
TYK14238.11.1e-5886.57retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0059933.11.6e-5775.93retrotransposon protein [Cucumis melo var. makuwa] >TYK24879.1 retrotransposon p... [more]
TYK30732.11.8e-5679.72retrotransposon protein [Cucumis melo var. makuwa][more]
BLAST of MELO3C030177 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C030177 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7U0051.4e-5981.56Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7UWC31.4e-5985.00Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3CSR05.3e-5986.57Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7UVE57.7e-5875.93Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3E4A28.5e-5779.72Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of MELO3C030177 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 20..56

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C030177.1MELO3C030177.1mRNA