Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCGACAATGCGGGTGAGTCTAAGAATTTCCTTCATTTAGGATTATTTCATGTTTTTTTTCTCTGACATTATTTGTTATTATAATTTATTGAGCAGGGTCGTCTTCTCAACCACCTGTGACTCCAACTCCAAGGAAACGTGCGCAGTCTCGACTCTTAGAGTTGGAGCGCCATGTTGCAATCAATGGGTGCATTCTAATGACGATCGCCCCTGGAGTGGAGAAGTGTATTTTCCCACACGCCATTCGTTTCAGCCAGGTGATATGCGTACGAAAGACATTTTCCATCCGCTGCCTTAAGTGGGCGAACGTTGGCAGAAAATATGTTGAGGTCGTTAAGGGCGACCTTCAGGTAATTAAGTCCACTACATATTTATGATTTCATTTGAAATATATCTAAGTTAACCAATTTAATGTGTTATTTTTGTAATGTGTAGCGGTTCTTTGTGCTTAATTTCAATGCTCAAGCAAAGAATAGGTTTTTTGAGCATCAGATGCTCACCACCTTTAAAGATTTTCGAGCTGACTGTCACTAACACTTCAAAAAGTATAGCGAGCTCGAGAAGGCTCGTGCCAACCCACCAAACGTATTGGTTGGACGTCATGAGGATTGGCACTTCCTCTGCGACCACTACATGAGCAGTGTATTTCAGGTATTTTTCATTCTTAATTATGATTTCAACTTTTAATATGTATAAGAAATAAACAATATAATTATTTTTATGTAGGAGCAATCACGGACGAACAAGGCTGCTAGACAGAAGCAGCCTTACAATTATAGCAGCGAGTCAAAGTCGTTTCTACGATGATAGCATGACACGA
mRNA sequence
ATGGGCGACAATGCGGGGTCGTCTTCTCAACCACCTGTGACTCCAACTCCAAGGAAACGTGCGCAGTCTCGACTCTTAGAGTTGGAGCGCCATGTTGCAATCAATGGGTGCATTCTAATGACGATCGCCCCTGGAGTGGAGAAGTGTATTTTCCCACACGCCATTCGTTTCAGCCAGGTGATATGCGTACGAAAGACATTTTCCATCCGCTGCCTTAAGTGGGCGAACGTTGGCAGAAAATATGTTGAGGTCGTTAAGGGCGACCTTCAGCGGTTCTTTGTGCTTAATTTCAATGCTCAAGCAAAGAATAGCGAGCTCGAGAAGGCTCGTGCCAACCCACCAAACGTATTGGTTGGACGTCATGAGGATTGGCACTTCCTCTGCGACCACTACATGAGCAGTGTATTTCAGGAGCAATCACGGACGAACAAGGCTGCTAGACAGAAGCAGCCTTACAATTATAGCAGCGAGTCAAAGTCGTTTCTACGATGATAGCATGACACGA
Coding sequence (CDS)
ATGGGCGACAATGCGGGGTCGTCTTCTCAACCACCTGTGACTCCAACTCCAAGGAAACGTGCGCAGTCTCGACTCTTAGAGTTGGAGCGCCATGTTGCAATCAATGGGTGCATTCTAATGACGATCGCCCCTGGAGTGGAGAAGTGTATTTTCCCACACGCCATTCGTTTCAGCCAGGTGATATGCGTACGAAAGACATTTTCCATCCGCTGCCTTAAGTGGGCGAACGTTGGCAGAAAATATGTTGAGGTCGTTAAGGGCGACCTTCAGCGGTTCTTTGTGCTTAATTTCAATGCTCAAGCAAAGAATAGCGAGCTCGAGAAGGCTCGTGCCAACCCACCAAACGTATTGGTTGGACGTCATGAGGATTGGCACTTCCTCTGCGACCACTACATGAGCAGTGTATTTCAGGAGCAATCACGGACGAACAAGGCTGCTAGACAGAAGCAGCCTTACAATTATAGCAGCGAGTCAAAGTCGTTTCTACGATGA
Protein sequence
MGDNAGSSSQPPVTPTPRKRAQSRLLELERHVAINGCILMTIAPGVEKCIFPHAIRFSQVICVRKTFSIRCLKWANVGRKYVEVVKGDLQRFFVLNFNAQAKNSELEKARANPPNVLVGRHEDWHFLCDHYMSSVFQEQSRTNKAARQKQPYNYSSESKSFLR
Homology
BLAST of MELO3C030160 vs. NCBI nr
Match:
TYK05151.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 335.1 bits (858), Expect = 3.4e-88
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 0
Query: 1 MGDNAGSSSQPPVTPTPRKRAQSRLLELERHVAINGCILMTIAPGVEKCIFPHAIRFSQV 60
MGDNAGSSSQPPVTPTPRKRAQSRLLELERHVAINGCILMTIAPGVEKCIFPHAIRFSQV
Sbjct: 19 MGDNAGSSSQPPVTPTPRKRAQSRLLELERHVAINGCILMTIAPGVEKCIFPHAIRFSQV 78
Query: 61 ICVRKTFSIRCLKWANVGRKYVEVVKGDLQRFFVLNFNAQAKNSELEKARANPPNVLVGR 120
ICVRKTFSIRCLKWANVGRKYVEVVKGDLQRFFVLNFNAQAKNSELEKARANPPNVLVGR
Sbjct: 79 ICVRKTFSIRCLKWANVGRKYVEVVKGDLQRFFVLNFNAQAKNSELEKARANPPNVLVGR 138
Query: 121 HEDWHFLCDHYMSSVFQEQSRTNKAARQKQPYNYSSESKSFLR 164
HEDWHFLCDHYMSSVFQEQSRTNKAARQKQPYNYSSESKSFLR
Sbjct: 139 HEDWHFLCDHYMSSVFQEQSRTNKAARQKQPYNYSSESKSFLR 181
BLAST of MELO3C030160 vs. NCBI nr
Match:
KAA0063985.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 330.5 bits (846), Expect = 8.3e-87
Identity = 163/164 (99.39%), Postives = 163/164 (99.39%), Query Frame = 0
Query: 1 MGDN-AGSSSQPPVTPTPRKRAQSRLLELERHVAINGCILMTIAPGVEKCIFPHAIRFSQ 60
MGDN AGSSSQPPVTPTPRKRAQSRLLELERHVAINGCILMTIAPGVEKCIFPHAIRFSQ
Sbjct: 19 MGDNAAGSSSQPPVTPTPRKRAQSRLLELERHVAINGCILMTIAPGVEKCIFPHAIRFSQ 78
Query: 61 VICVRKTFSIRCLKWANVGRKYVEVVKGDLQRFFVLNFNAQAKNSELEKARANPPNVLVG 120
VICVRKTFSIRCLKWANVGRKYVEVVKGDLQRFFVLNFNAQAKNSELEKARANPPNVLVG
Sbjct: 79 VICVRKTFSIRCLKWANVGRKYVEVVKGDLQRFFVLNFNAQAKNSELEKARANPPNVLVG 138
Query: 121 RHEDWHFLCDHYMSSVFQEQSRTNKAARQKQPYNYSSESKSFLR 164
RHEDWHFLCDHYMSSVFQEQSRTNKAARQKQPYNYSSESKSFLR
Sbjct: 139 RHEDWHFLCDHYMSSVFQEQSRTNKAARQKQPYNYSSESKSFLR 182
BLAST of MELO3C030160 vs. NCBI nr
Match:
KAA0045294.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 255.0 bits (650), Expect = 4.4e-64
Identity = 125/165 (75.76%), Postives = 140/165 (84.85%), Query Frame = 0
Query: 1 MGDNAGSSSQPPVTPTPRKRAQSRLLELERHVAINGCILMTIAPGVEKCIFPHAIRFSQV 60
+GDN SS +TPTPR+RAQSRLLELERHVAING I MTIAPG EK I PHA+RFSQ
Sbjct: 24 VGDNTAGSSSQQMTPTPRRRAQSRLLELERHVAINGRIPMTIAPGAEKPISPHAVRFSQT 83
Query: 61 I--CVRKTFSIRCLKWANVGRKYVEVVKGDLQRFFVLNFNAQAKNSELEKARANPPNVLV 120
I CVRKTF +RCLKWA+VGR+Y+EVVKGDLQR FVL+FN Q N++ E+ARANPPN LV
Sbjct: 84 IGVCVRKTFPVRCLKWADVGREYIEVVKGDLQRLFVLDFNDQTMNNDPEEARANPPNALV 143
Query: 121 GRHEDWHFLCDHYMSSVFQEQSRTNKAARQKQPYNYSSESKSFLR 164
GR EDWHFLCDHY+S FQEQSRTNKAARQKQPYN+SS SKSFL+
Sbjct: 144 GRDEDWHFLCDHYISRAFQEQSRTNKAARQKQPYNHSSGSKSFLQ 188
BLAST of MELO3C030160 vs. NCBI nr
Match:
KAA0066435.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 249.2 bits (635), Expect = 2.4e-62
Identity = 124/165 (75.15%), Postives = 137/165 (83.03%), Query Frame = 0
Query: 1 MGDNAGSSSQPPVTPTPRKRAQSRLLELERHVAINGCILMTIAPGVEKCIFPHAIRFSQV 60
+GDN SS TPTPR+RAQSRLLELERHVAING I MTIAPG EK I PHA+RFSQ
Sbjct: 24 VGDNTAGSSSQQTTPTPRRRAQSRLLELERHVAINGRIPMTIAPGAEKPISPHAVRFSQT 83
Query: 61 I--CVRKTFSIRCLKWANVGRKYVEVVKGDLQRFFVLNFNAQAKNSELEKARANPPNVLV 120
I CVRKTF +R LKWA+VGR+Y+EVVKGDLQR FVL+FN QA S+ E+ARANPPN LV
Sbjct: 84 IGVCVRKTFPVRYLKWADVGREYIEVVKGDLQRLFVLDFNDQAMKSDPEEARANPPNALV 143
Query: 121 GRHEDWHFLCDHYMSSVFQEQSRTNKAARQKQPYNYSSESKSFLR 164
GR EDWHFLCDHY+S FQEQSRTNKA RQKQPYN+SS SKSFL+
Sbjct: 144 GRDEDWHFLCDHYISRAFQEQSRTNKAVRQKQPYNHSSGSKSFLQ 188
BLAST of MELO3C030160 vs. NCBI nr
Match:
TYK17077.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 246.1 bits (627), Expect = 2.1e-61
Identity = 130/190 (68.42%), Postives = 143/190 (75.26%), Query Frame = 0
Query: 1 MGDNAGSSSQPPVTPTPRKRAQSRLLELERHVAINGCILMTIAPGVEKCIFPHAIRFSQV 60
+GDN GSSSQ TPTPR+RAQSRLLELERHVAING I MTIAPG EK I PHA+RFSQ
Sbjct: 25 VGDNTGSSSQ-QTTPTPRRRAQSRLLELERHVAINGRIPMTIAPGAEKPISPHAVRFSQA 84
Query: 61 I--CVRKTFSIRCLKWANVGRKYVEVVKGDLQRFFVLNFNAQAKN--------------- 120
I CVRKTF +RCLKW +VGR+Y+EVVKGDLQRFFVL+FN QA N
Sbjct: 85 IGVCVRKTFPVRCLKWTDVGREYIEVVKGDLQRFFVLDFNDQAMNRFVEHQMLTTFKEFR 144
Query: 121 ----------SELEKARANPPNVLVGRHEDWHFLCDHYMSSVFQEQSRTNKAARQKQPYN 164
S+ E+ARANPPN LVGR EDWHFLCDHY+S FQEQSRTNKAARQKQPYN
Sbjct: 145 ADCHKHFKKYSDPEEARANPPNALVGRDEDWHFLCDHYISRAFQEQSRTNKAARQKQPYN 204
BLAST of MELO3C030160 vs. ExPASy TrEMBL
Match:
A0A5D3BZQ1 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1415G00030 PE=4 SV=1)
HSP 1 Score: 335.1 bits (858), Expect = 1.6e-88
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 0
Query: 1 MGDNAGSSSQPPVTPTPRKRAQSRLLELERHVAINGCILMTIAPGVEKCIFPHAIRFSQV 60
MGDNAGSSSQPPVTPTPRKRAQSRLLELERHVAINGCILMTIAPGVEKCIFPHAIRFSQV
Sbjct: 19 MGDNAGSSSQPPVTPTPRKRAQSRLLELERHVAINGCILMTIAPGVEKCIFPHAIRFSQV 78
Query: 61 ICVRKTFSIRCLKWANVGRKYVEVVKGDLQRFFVLNFNAQAKNSELEKARANPPNVLVGR 120
ICVRKTFSIRCLKWANVGRKYVEVVKGDLQRFFVLNFNAQAKNSELEKARANPPNVLVGR
Sbjct: 79 ICVRKTFSIRCLKWANVGRKYVEVVKGDLQRFFVLNFNAQAKNSELEKARANPPNVLVGR 138
Query: 121 HEDWHFLCDHYMSSVFQEQSRTNKAARQKQPYNYSSESKSFLR 164
HEDWHFLCDHYMSSVFQEQSRTNKAARQKQPYNYSSESKSFLR
Sbjct: 139 HEDWHFLCDHYMSSVFQEQSRTNKAARQKQPYNYSSESKSFLR 181
BLAST of MELO3C030160 vs. ExPASy TrEMBL
Match:
A0A5A7VDM9 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold616G001510 PE=4 SV=1)
HSP 1 Score: 330.5 bits (846), Expect = 4.0e-87
Identity = 163/164 (99.39%), Postives = 163/164 (99.39%), Query Frame = 0
Query: 1 MGDN-AGSSSQPPVTPTPRKRAQSRLLELERHVAINGCILMTIAPGVEKCIFPHAIRFSQ 60
MGDN AGSSSQPPVTPTPRKRAQSRLLELERHVAINGCILMTIAPGVEKCIFPHAIRFSQ
Sbjct: 19 MGDNAAGSSSQPPVTPTPRKRAQSRLLELERHVAINGCILMTIAPGVEKCIFPHAIRFSQ 78
Query: 61 VICVRKTFSIRCLKWANVGRKYVEVVKGDLQRFFVLNFNAQAKNSELEKARANPPNVLVG 120
VICVRKTFSIRCLKWANVGRKYVEVVKGDLQRFFVLNFNAQAKNSELEKARANPPNVLVG
Sbjct: 79 VICVRKTFSIRCLKWANVGRKYVEVVKGDLQRFFVLNFNAQAKNSELEKARANPPNVLVG 138
Query: 121 RHEDWHFLCDHYMSSVFQEQSRTNKAARQKQPYNYSSESKSFLR 164
RHEDWHFLCDHYMSSVFQEQSRTNKAARQKQPYNYSSESKSFLR
Sbjct: 139 RHEDWHFLCDHYMSSVFQEQSRTNKAARQKQPYNYSSESKSFLR 182
BLAST of MELO3C030160 vs. ExPASy TrEMBL
Match:
A0A5A7TQ98 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold316G00520 PE=4 SV=1)
HSP 1 Score: 255.0 bits (650), Expect = 2.1e-64
Identity = 125/165 (75.76%), Postives = 140/165 (84.85%), Query Frame = 0
Query: 1 MGDNAGSSSQPPVTPTPRKRAQSRLLELERHVAINGCILMTIAPGVEKCIFPHAIRFSQV 60
+GDN SS +TPTPR+RAQSRLLELERHVAING I MTIAPG EK I PHA+RFSQ
Sbjct: 24 VGDNTAGSSSQQMTPTPRRRAQSRLLELERHVAINGRIPMTIAPGAEKPISPHAVRFSQT 83
Query: 61 I--CVRKTFSIRCLKWANVGRKYVEVVKGDLQRFFVLNFNAQAKNSELEKARANPPNVLV 120
I CVRKTF +RCLKWA+VGR+Y+EVVKGDLQR FVL+FN Q N++ E+ARANPPN LV
Sbjct: 84 IGVCVRKTFPVRCLKWADVGREYIEVVKGDLQRLFVLDFNDQTMNNDPEEARANPPNALV 143
Query: 121 GRHEDWHFLCDHYMSSVFQEQSRTNKAARQKQPYNYSSESKSFLR 164
GR EDWHFLCDHY+S FQEQSRTNKAARQKQPYN+SS SKSFL+
Sbjct: 144 GRDEDWHFLCDHYISRAFQEQSRTNKAARQKQPYNHSSGSKSFLQ 188
BLAST of MELO3C030160 vs. ExPASy TrEMBL
Match:
A0A5A7VL07 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G005270 PE=4 SV=1)
HSP 1 Score: 249.2 bits (635), Expect = 1.2e-62
Identity = 124/165 (75.15%), Postives = 137/165 (83.03%), Query Frame = 0
Query: 1 MGDNAGSSSQPPVTPTPRKRAQSRLLELERHVAINGCILMTIAPGVEKCIFPHAIRFSQV 60
+GDN SS TPTPR+RAQSRLLELERHVAING I MTIAPG EK I PHA+RFSQ
Sbjct: 24 VGDNTAGSSSQQTTPTPRRRAQSRLLELERHVAINGRIPMTIAPGAEKPISPHAVRFSQT 83
Query: 61 I--CVRKTFSIRCLKWANVGRKYVEVVKGDLQRFFVLNFNAQAKNSELEKARANPPNVLV 120
I CVRKTF +R LKWA+VGR+Y+EVVKGDLQR FVL+FN QA S+ E+ARANPPN LV
Sbjct: 84 IGVCVRKTFPVRYLKWADVGREYIEVVKGDLQRLFVLDFNDQAMKSDPEEARANPPNALV 143
Query: 121 GRHEDWHFLCDHYMSSVFQEQSRTNKAARQKQPYNYSSESKSFLR 164
GR EDWHFLCDHY+S FQEQSRTNKA RQKQPYN+SS SKSFL+
Sbjct: 144 GRDEDWHFLCDHYISRAFQEQSRTNKAVRQKQPYNHSSGSKSFLQ 188
BLAST of MELO3C030160 vs. ExPASy TrEMBL
Match:
A0A5D3CZD0 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1327G00260 PE=4 SV=1)
HSP 1 Score: 246.1 bits (627), Expect = 9.9e-62
Identity = 130/190 (68.42%), Postives = 143/190 (75.26%), Query Frame = 0
Query: 1 MGDNAGSSSQPPVTPTPRKRAQSRLLELERHVAINGCILMTIAPGVEKCIFPHAIRFSQV 60
+GDN GSSSQ TPTPR+RAQSRLLELERHVAING I MTIAPG EK I PHA+RFSQ
Sbjct: 25 VGDNTGSSSQ-QTTPTPRRRAQSRLLELERHVAINGRIPMTIAPGAEKPISPHAVRFSQA 84
Query: 61 I--CVRKTFSIRCLKWANVGRKYVEVVKGDLQRFFVLNFNAQAKN--------------- 120
I CVRKTF +RCLKW +VGR+Y+EVVKGDLQRFFVL+FN QA N
Sbjct: 85 IGVCVRKTFPVRCLKWTDVGREYIEVVKGDLQRFFVLDFNDQAMNRFVEHQMLTTFKEFR 144
Query: 121 ----------SELEKARANPPNVLVGRHEDWHFLCDHYMSSVFQEQSRTNKAARQKQPYN 164
S+ E+ARANPPN LVGR EDWHFLCDHY+S FQEQSRTNKAARQKQPYN
Sbjct: 145 ADCHKHFKKYSDPEEARANPPNALVGRDEDWHFLCDHYISRAFQEQSRTNKAARQKQPYN 204
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
TYK05151.1 | 3.4e-88 | 100.00 | CACTA en-spm transposon protein [Cucumis melo var. makuwa] | [more] |
KAA0063985.1 | 8.3e-87 | 99.39 | CACTA en-spm transposon protein [Cucumis melo var. makuwa] | [more] |
KAA0045294.1 | 4.4e-64 | 75.76 | CACTA en-spm transposon protein [Cucumis melo var. makuwa] | [more] |
KAA0066435.1 | 2.4e-62 | 75.15 | CACTA en-spm transposon protein [Cucumis melo var. makuwa] | [more] |
TYK17077.1 | 2.1e-61 | 68.42 | CACTA en-spm transposon protein [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3BZQ1 | 1.6e-88 | 100.00 | CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... | [more] |
A0A5A7VDM9 | 4.0e-87 | 99.39 | CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... | [more] |
A0A5A7TQ98 | 2.1e-64 | 75.76 | CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... | [more] |
A0A5A7VL07 | 1.2e-62 | 75.15 | CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... | [more] |
A0A5D3CZD0 | 9.9e-62 | 68.42 | CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... | [more] |
Match Name | E-value | Identity | Description | |