MELO3C030113 (gene) Melon (DHL92) v4

Overview
NameMELO3C030113
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionUnknown protein
Locationchr03: 9231263 .. 9231622 (+)
RNA-Seq ExpressionMELO3C030113
SyntenyMELO3C030113
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAAACAAATAATTTCCAGCAAAAAGATCTCCCAACTAAATCTCTTCAATACCTTCACAATTGATCCTCTCATCGTATTCACCGGTCGCCATTACTATCTTAAAAGCTCCCTCAAGCTTGGAATTCTCAGTTTCTTCAACATCCTTCCAATCGACAAAGAAGTAGAATCCTTTCTCATTCTCATTTTTAACCACCACTGTCGCCGCCTCCATCTCTTCCTAATTTCTTTTCCTCTCCATTCTCTTGATCTACCAAACACCTTCTCAAATTCCTCGCTATATCCCAGTCGTCGGTACTATAATTTCCTAGCCAATGCGGTTTCGAGGTTTGGCATGGCAGATTTTAGAAGGAATTAG

mRNA sequence

ATGAAGAAACAAATAATTTCCAGCAAAAAGATCTCCCAACTAAATCTCTTCAATACCTTCACAATTGATCCTCTCATCGTATTCACCGGTCGCCATTACTATCTTAAAAGCTCCCTCAAGCTTGGAATTCTCAGTTTCTTCAACATCCTTCCAATCGACAAAGAAGTAGAATCCTTTCTCATTCTCATTTTTAACCACCACTGTCGCCGCCTCCATCTCTTCCTAATTTCTTTTCCTCTCCATTCTCTTGATCTACCAAACACCTTCTCAAATTCCTCGCTATATCCCAGTCGTCGGTACTATAATTTCCTAGCCAATGCGGTTTCGAGGTTTGGCATGGCAGATTTTAGAAGGAATTAG

Coding sequence (CDS)

ATGAAGAAACAAATAATTTCCAGCAAAAAGATCTCCCAACTAAATCTCTTCAATACCTTCACAATTGATCCTCTCATCGTATTCACCGGTCGCCATTACTATCTTAAAAGCTCCCTCAAGCTTGGAATTCTCAGTTTCTTCAACATCCTTCCAATCGACAAAGAAGTAGAATCCTTTCTCATTCTCATTTTTAACCACCACTGTCGCCGCCTCCATCTCTTCCTAATTTCTTTTCCTCTCCATTCTCTTGATCTACCAAACACCTTCTCAAATTCCTCGCTATATCCCAGTCGTCGGTACTATAATTTCCTAGCCAATGCGGTTTCGAGGTTTGGCATGGCAGATTTTAGAAGGAATTAG

Protein sequence

MKKQIISSKKISQLNLFNTFTIDPLIVFTGRHYYLKSSLKLGILSFFNILPIDKEVESFLILIFNHHCRRLHLFLISFPLHSLDLPNTFSNSSLYPSRRYYNFLANAVSRFGMADFRRN
Homology
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BLAST of MELO3C030113 vs. NCBI nr
Match: KAG6602403.1 (E3 ubiquitin-protein ligase RGLG2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 63.2 bits (152), Expect = 1.8e-06
Identity = 46/91 (50.55%), Postives = 53/91 (58.24%), Query Frame = 0 

Query: 29  TGRHYYLKSSLKLGILSFFNILPIDKEVESFLILIFNHHC---RRLHLFLISFPLHSLDL 88
           T R + L S L+LG LSFFN+LPI+       +LI NH       L L L++ P   LDL
Sbjct: 4   TSRDFLLNSFLRLGTLSFFNLLPIE------ALLILNHRFDLPTNLLLLLLASP--RLDL 63

Query: 89  PNTFSNSSLYPSRRYYNFLANA-VSRFGMAD 116
           PN  SNSSLY S RY N    A VSR GMAD
Sbjct: 64  PNASSNSSLYLSLRYRNLPGGAVVSRSGMAD 86

The following BLAST results are available for this feature:
BLAST of MELO3C030113 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6602403.11.8e-0650.55E3 ubiquitin-protein ligase RGLG2, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of MELO3C030113 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C030113 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C030113 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C030113.1MELO3C030113.1mRNA