MELO3C030086 (gene) Melon (DHL92) v4

Overview
NameMELO3C030086
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionU11/U12 small nuclear ribonucleoprotein 59 kDa protein isoform X1
Locationchr03: 7671285 .. 7673308 (-)
RNA-Seq ExpressionMELO3C030086
SyntenyMELO3C030086
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGAAATCGACTGGCGGCTAGAGAGACGCGGGTCGGCTTCCGATCCGCGAAGAGTGGTGGCTGGAGAGACGCACGATGAAGCACAACGGCTCGGATGGGTGGCGATTGGCTCGGGCTACCGGCTCGGGTTGATCTACGACGAACGCCCGACAGCGACGATTGGCGGAGAAGGGAGGGGCGGCGGCGGCGGTTTAGGGCTAGGGTTTTCTCCTTCTTGGGTGAAGATGATGATGGGGCATTAATTGCACATCCCAATGCTCAATTTAAATAAAATAAGTCCTTTTATTTTATTTTATTTTGTTTTATTTTATCACTTTATTCTCTTTCCCCAAAATCTTCACACCTTCTCTCTTTATTTAAAATCACCAAATGTCCCTTATCTTTAAACCAATAACTCTACCAAATTCATTTTCCAGTTTAAATAATTATTATCCTCAACTTAATTAATTACACAATCAAAAAAATATCACTAGTGAATTTTCCTCAAGTAAATTCAAAATTCGATAACTACACTAAGATAAAATTTAAAATTCCAAAATTTTGGGGTGTTACAAGTAGTCCCTATGACGAAATTTTGCTATCAATCACTTGTCTGGTTGTGATTAAAAGAATCATAAACTAAGGAATTTGGATCTTAAAGCTTAGGAAAGAAGAGTTTGTGAATGCTGGGTTTGTTTACATTCCATATTTTTTTGCTTCTTTGTCATTTAAGTGATGTTGCTAATACAAAGTAGTCAATCAGAAGAAACAAAATGAAGGGCCTGTGTGTGCTATATGTGGTGTAAATGAAAGTTCATGATTTTGGCTGTTAATTCCTCCCTTTTCAGGGGACCCTTTCTTTCTCCTATGAGTCCCTACAGGCTATATAACTGCTTACTACTATGCTTGACGTGTTTGTTTGTAATAATGTGGTGGAGCCCTTGATGATGATATGGCAAATATCATTGTTGCTCAACTTCTATACCTTGATGCTATTGATCCCAATAAGGTTCTCTTTCTTTGCTCTCAATTCATTTTAAGGAAGTCTTTCGGGGTAGGAAGAGGGAGCATAGTGAGATTTGGTCTTTGGTTAGGTTTCTCGTGTCCCTTTAGGGTGTTTTGGTGGCATGTTTTCTTTTTGTATCAGTATTACTACTGCTACTACTAATAGTCAATATTTGATTTCTTCTCGTAGGAAACTTGGCAGGAGATATGGTGTTATTGAATGTGATCCACTTGTTCGTTGAGGCATGGTGAAAACTGTAAGTAGAAGCATATACCGTAGACTTGATGTAGACTTGGTTGCATTTTTGAAAATAGTTCTCAGACATGGTTATGATTGTCTGATTATGCAACCATATAGTTCCGCTAGACTCTCTCAAAATTACTCACTTTATGTCTTCGATTAGTGATTTTCTTCCGTTCTTTCTCAGGCTGGGCACATGGTCATTCCGTATATGCCTATGCTGGTGCCTCCTCTTAATTGGACTTGGTGGCATGTTTTCTTTTTGTATGTCTTTAGGGTGATTTTTATGGATTGTGTTCTTTAATTATTGGGTAAGTCAAGATTTTGAGGTTTAGTTTGGTCCCTGGAACTATTTTCTCTATTTTCTTTTCTGACTTCACTATGTGAATGACTTTTTAAAATAAAAATATGATTGATGTTGTAAGTTCTTATTATCTTCTCTATCATTAAATTGCCCTCTCTATGTATAAATGCATGTATTATTAAAAGTAGTATGTTGCTACCTTTATATGCAATAGTACTTTTCAGCAAAGAAACTTTGACGCTTGGATCTGGTTATATCCTAATAATAGTAGTAGTTGGTAATATATTTTTCCAGGTCAATTTCTACTTGAGGAGGATGATAAGTTTCTAGATAAGGTTTGAGCTACAGTTCATGAAGAGGAACGTCAAGCCCTTGCTGCAGCTGATACAAATGCTGCCAAGGATGCCATTGCTACTGTTGAGGTCTCTAGGAAGACTATTCCAACTTACCCTGAATCAAGGAATCCAATATTTAAGTCTTTATCAACTATG

mRNA sequence

ATGGAAGAAATCGACTGGCGGCTAGAGAGACGCGGGTCGGCTTCCGATCCGCGAAGAGTGGTGGCTGGAGAGACGCACGATGAAGCACAACGGCTCGGATGGGTGGCGATTGGCTCGGGCTACCGGCTCGGGTTGATCTACGACGAACGCCCGACAGCGACGATTGGCGGAGAAGGGAGGGGCGGCGGCGGCGTTCATGAAGAGGAACGTCAAGCCCTTGCTGCAGCTGATACAAATGCTGCCAAGGATGCCATTGCTACTGTTGAGGTCTCTAGGAAGACTATTCCAACTTACCCTGAATCAAGGAATCCAATATTTAAGTCTTTATCAACTATG

Coding sequence (CDS)

ATGGAAGAAATCGACTGGCGGCTAGAGAGACGCGGGTCGGCTTCCGATCCGCGAAGAGTGGTGGCTGGAGAGACGCACGATGAAGCACAACGGCTCGGATGGGTGGCGATTGGCTCGGGCTACCGGCTCGGGTTGATCTACGACGAACGCCCGACAGCGACGATTGGCGGAGAAGGGAGGGGCGGCGGCGGCGTTCATGAAGAGGAACGTCAAGCCCTTGCTGCAGCTGATACAAATGCTGCCAAGGATGCCATTGCTACTGTTGAGGTCTCTAGGAAGACTATTCCAACTTACCCTGAATCAAGGAATCCAATATTTAAGTCTTTATCAACTATG

Protein sequence

MEEIDWRLERRGSASDPRRVVAGETHDEAQRLGWVAIGSGYRLGLIYDERPTATIGGEGRGGGGVHEEERQALAAADTNAAKDAIATVEVSRKTIPTYPESRNPIFKSLSTM
Homology
[Close]
BLAST of MELO3C030086 vs. NCBI nr
Match: KAA0037113.1 (hypothetical protein E6C27_scaffold379G00140 [Cucumis melo var. makuwa] >TYK13963.1 hypothetical protein E5676_scaffold832G001670 [Cucumis melo var. makuwa])

HSP 1 Score: 84.0 bits (206), Expect = 9.3e-13
Identity = 43/48 (89.58%), Postives = 45/48 (93.75%), Query Frame = 0 

Query: 65  VHEEERQALAAADTNAAKDAIATVEVSRKTIPTYPESRNPIFKSLSTM 113
           V EEERQALAAAD +A KDAIAT+EVSRKTIPTYPESRNPIFKSLSTM
Sbjct: 23  VQEEERQALAAADIDAVKDAIATIEVSRKTIPTYPESRNPIFKSLSTM 70

[Close]
BLAST of MELO3C030086 vs. NCBI nr
Match: KAA0062676.1 (hypothetical protein E6C27_scaffold1576G00020 [Cucumis melo var. makuwa] >TYK08458.1 hypothetical protein E5676_scaffold632G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 79.7 bits (195), Expect = 1.7e-11
Identity = 41/48 (85.42%), Postives = 43/48 (89.58%), Query Frame = 0 

Query: 65  VHEEERQALAAADTNAAKDAIATVEVSRKTIPTYPESRNPIFKSLSTM 113
           V EEE Q LAAADT+AAKD IAT EVSRKTIPTYPESRNPIFKS+STM
Sbjct: 23  VQEEECQVLAAADTDAAKDVIATAEVSRKTIPTYPESRNPIFKSISTM 70

[Close]
BLAST of MELO3C030086 vs. NCBI nr
Match: KAA0053480.1 (Programmed cell death protein 7 [Cucumis melo var. makuwa] >TYK27828.1 Programmed cell death protein 7 [Cucumis melo var. makuwa])

HSP 1 Score: 74.7 bits (182), Expect = 5.6e-10
Identity = 40/45 (88.89%), Postives = 41/45 (91.11%), Query Frame = 0 

Query: 65  VHEEERQALAAADTNAAKDAIATVEVSRKTIPTYPESRNPIFKSL 110
           V EEERQALAAADT+AAK AIAT EVSRKTIPTY ESRNPIFKSL
Sbjct: 24  VQEEERQALAAADTDAAKGAIATAEVSRKTIPTYLESRNPIFKSL 68

[Close]
BLAST of MELO3C030086 vs. NCBI nr
Match: XP_016899131.1 (PREDICTED: U11/U12 small nuclear ribonucleoprotein 59 kDa protein isoform X2 [Cucumis melo])

HSP 1 Score: 70.1 bits (170), Expect = 1.4e-08
Identity = 35/40 (87.50%), Postives = 38/40 (95.00%), Query Frame = 0 

Query: 65  VHEEERQALAAADTNAAKDAIATVEVSRKTIPTYPESRNP 105
           V EEERQALAAADT+AAKDAIAT EVSRKT+PTYPESR+P
Sbjct: 257 VEEEERQALAAADTDAAKDAIATAEVSRKTVPTYPESRDP 296

[Close]
BLAST of MELO3C030086 vs. NCBI nr
Match: KAA0048935.1 (U11/U12 small nuclear ribonucleoprotein 59 kDa protein isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 70.1 bits (170), Expect = 1.4e-08
Identity = 35/40 (87.50%), Postives = 38/40 (95.00%), Query Frame = 0 

Query: 65  VHEEERQALAAADTNAAKDAIATVEVSRKTIPTYPESRNP 105
           V EEERQALAAADT+AAKDAIAT EVSRKT+PTYPESR+P
Sbjct: 286 VEEEERQALAAADTDAAKDAIATAEVSRKTVPTYPESRDP 325

[Close]
BLAST of MELO3C030086 vs. ExPASy TrEMBL
Match: A0A5D3CQ23 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold832G001670 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 4.5e-13
Identity = 43/48 (89.58%), Postives = 45/48 (93.75%), Query Frame = 0 

Query: 65  VHEEERQALAAADTNAAKDAIATVEVSRKTIPTYPESRNPIFKSLSTM 113
           V EEERQALAAAD +A KDAIAT+EVSRKTIPTYPESRNPIFKSLSTM
Sbjct: 23  VQEEERQALAAADIDAVKDAIATIEVSRKTIPTYPESRNPIFKSLSTM 70

[Close]
BLAST of MELO3C030086 vs. ExPASy TrEMBL
Match: A0A5D3CB94 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold632G00020 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 8.5e-12
Identity = 41/48 (85.42%), Postives = 43/48 (89.58%), Query Frame = 0 

Query: 65  VHEEERQALAAADTNAAKDAIATVEVSRKTIPTYPESRNPIFKSLSTM 113
           V EEE Q LAAADT+AAKD IAT EVSRKTIPTYPESRNPIFKS+STM
Sbjct: 23  VQEEECQVLAAADTDAAKDVIATAEVSRKTIPTYPESRNPIFKSISTM 70

[Close]
BLAST of MELO3C030086 vs. ExPASy TrEMBL
Match: A0A5D3DWL4 (Programmed cell death protein 7 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold5921G00010 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 2.7e-10
Identity = 40/45 (88.89%), Postives = 41/45 (91.11%), Query Frame = 0 

Query: 65  VHEEERQALAAADTNAAKDAIATVEVSRKTIPTYPESRNPIFKSL 110
           V EEERQALAAADT+AAK AIAT EVSRKTIPTY ESRNPIFKSL
Sbjct: 24  VQEEERQALAAADTDAAKGAIATAEVSRKTIPTYLESRNPIFKSL 68

[Close]
BLAST of MELO3C030086 vs. ExPASy TrEMBL
Match: A0A5D3D0C0 (U11/U12 small nuclear ribonucleoprotein 59 kDa protein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G005040 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 6.7e-09
Identity = 35/40 (87.50%), Postives = 38/40 (95.00%), Query Frame = 0 

Query: 65  VHEEERQALAAADTNAAKDAIATVEVSRKTIPTYPESRNP 105
           V EEERQALAAADT+AAKDAIAT EVSRKT+PTYPESR+P
Sbjct: 257 VEEEERQALAAADTDAAKDAIATAEVSRKTVPTYPESRDP 296

[Close]
BLAST of MELO3C030086 vs. ExPASy TrEMBL
Match: A0A5A7U5M4 (U11/U12 small nuclear ribonucleoprotein 59 kDa protein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold171G001550 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 6.7e-09
Identity = 35/40 (87.50%), Postives = 38/40 (95.00%), Query Frame = 0 

Query: 65  VHEEERQALAAADTNAAKDAIATVEVSRKTIPTYPESRNP 105
           V EEERQALAAADT+AAKDAIAT EVSRKT+PTYPESR+P
Sbjct: 286 VEEEERQALAAADTDAAKDAIATAEVSRKTVPTYPESRDP 325

The following BLAST results are available for this feature:
BLAST of MELO3C030086 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0037113.19.3e-1389.58hypothetical protein E6C27_scaffold379G00140 [Cucumis melo var. makuwa] >TYK1396... [more]
KAA0062676.11.7e-1185.42hypothetical protein E6C27_scaffold1576G00020 [Cucumis melo var. makuwa] >TYK084... [more]
KAA0053480.15.6e-1088.89Programmed cell death protein 7 [Cucumis melo var. makuwa] >TYK27828.1 Programme... [more]
XP_016899131.11.4e-0887.50PREDICTED: U11/U12 small nuclear ribonucleoprotein 59 kDa protein isoform X2 [Cu... [more]
KAA0048935.11.4e-0887.50U11/U12 small nuclear ribonucleoprotein 59 kDa protein isoform X1 [Cucumis melo ... [more]
BLAST of MELO3C030086 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C030086 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CQ234.5e-1389.58Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3CB948.5e-1285.42Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3DWL42.7e-1088.89Programmed cell death protein 7 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A5D3D0C06.7e-0987.50U11/U12 small nuclear ribonucleoprotein 59 kDa protein isoform X1 OS=Cucumis mel... [more]
A0A5A7U5M46.7e-0987.50U11/U12 small nuclear ribonucleoprotein 59 kDa protein isoform X1 OS=Cucumis mel... [more]
BLAST of MELO3C030086 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..22

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C030086.1MELO3C030086.1mRNA