MELO3C030057 (gene) Melon (DHL92) v4

Overview
NameMELO3C030057
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionCACTA en-spm transposon protein
Locationchr09: 10230024 .. 10230899 (+)
RNA-Seq ExpressionMELO3C030057
SyntenyMELO3C030057
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTGGAATGGCTATCCTGCGGTTATGGTAGCCTTGTTTGTTTTGACTTTGTTTCTGTTTGGGATGGTTTCAAGGGGTGGTAGTAGGATAGCTTATAAGGTAGCGTTCTTGGAAGGGGTAGATAGGATGCGAAGATTTTGAAGTATTTTGTTGTAAATAATTAGGTTGTGTTGGTTATCCTGCAGTTATGGGAGCCTCTATAGTTTGAAGTTAGTTTTAGTGAAAATTTTGAGAGATTGTATATTACAAAAAAAATAGTGAAAATTCAAGGGAGTAAGTCATGGATGTGAGAGAGGGATAGAGATATATTTCTAACCTATTTATGTTTTAGGGACTTAAACAATGGACAAGGGTTGGATGAAAATTAGAAATAAGTTATTCCTTGAGTATAGACAGGGAGTAACCCAATTTTTAGAATTTGCCAAGTTTCACGTTGATGCCTACGGATGATTAAGGCGTCCATGCAATAGATGTTTGAATTTAAATTGGAGCTCATTAAAGGGTGTGGAATGACATCTATTGACTATTGGAATATCCCCCTACTACACATAATTGGTGTATCATGGAGAGTCATTAAGCTTTAGAGGTACAGAAAACTTTGAGGAAGGAACTAGTAGTAATCCTTTTGATGAAGGAACTCGTAGTAGGCAATTTAATGAAGAAGATGATATGTTTGGTATGCTAAATGATTTACAAGCCCCTATTGAATAGGAAGAGGAAACAGAGGAACTCGTTTGGAAGATGAAATACCGATGAATATTGGGTAGATATAGATGAAGATAGAACAAACATATTTCAGGACTAATTGAATGAAGCACGTAATAAGTTGTACCTCGGTTGTTCTGAATTTTTGTCGTTGAATTTTTTGGTTAAGTTGA

mRNA sequence

TTGGAATGGCTATCCTGCGGTTATGGGACTTAAACAATGGACAAGGGTTGGATGAAAATTAGAAATAAGTTATTCCTTGAGTATAGACAGGGAGTAACCCAATTTTTAGAATTTGCCAAGTTTCACGTTGATGCCTACGGATGATTAAGGCGTCCATGCAATAGATGTTTGAATTTAAATTGGAGCTCATTAAAGGGTGTGGAATGACATCTATTGACTATTGGAATATCCCCCTACTACACATAATTGGTGTATCATGGAGAGTCATTAAGCTTTAGAGGTACAGAAAACTTTGAGGAAGGAACTAGTAGTAATCCTTTTGATGAAGGAACTCGTAGTAGGCAATTTAATGAAGAAGATGATATGTTTGGTATGCTAAATGATTTACAAGCCCCTATTGAATAGGAAGAGGAAACAGAGGAACTCGTTTGGAAGATGAAATACCGATGAATATTGGGTAGATATAGATGAAGATAGAACAAACATATTTCAGGACTAATTGAATGAAGCACGTAATAAGTTGTACCTCGGTTGTTCTGAATTTTTGTCGTTGAATTTTTTGGTTAAGTTGA

Coding sequence (CDS)

ATGTTTGAATTTAAATTGGAGCTCATTAAAGGGTGTGGAATGACATCTATTGACTATTGGAATATCCCCCTACTACACATAATTGGTGTATCATGGAGAGTCATTAAGCTTTAG

Protein sequence

MFEFKLELIKGCGMTSIDYWNIPLLHIIGVSWRVIKL
Homology
[Close]
BLAST of MELO3C030057 vs. NCBI nr
Match: KAA0051834.1 (uncharacterized protein E6C27_scaffold60G002600 [Cucumis melo var. makuwa] >TYK21412.1 uncharacterized protein E5676_scaffold609G00610 [Cucumis melo var. makuwa])

HSP 1 Score: 67.0 bits (162), Expect = 3.9e-08
Identity = 30/37 (81.08%), Postives = 32/37 (86.49%), Query Frame = 0 

Query: 1  MFEFKLELIKGCGMTSIDYWNIPLLHIIGVSWRVIKL 38
          MFEFKLELI+GCG TS DYWNI LLH + VSWRVIKL
Sbjct: 4  MFEFKLELIRGCGTTSTDYWNILLLHRMSVSWRVIKL 40

[Close]
BLAST of MELO3C030057 vs. NCBI nr
Match: KAA0051873.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK21365.1 CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 62.0 bits (149), Expect = 1.2e-06
Identity = 27/34 (79.41%), Postives = 29/34 (85.29%), Query Frame = 0 

Query: 2  FEFKLELIKGCGMTSIDYWNIPLLHIIGVSWRVI 36
          FEFKLELI+GCG TS D WN PLLH +GVSWRVI
Sbjct: 5  FEFKLELIRGCGTTSADCWNTPLLHRMGVSWRVI 38

[Close]
BLAST of MELO3C030057 vs. ExPASy TrEMBL
Match: A0A5D3DCW3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold609G00610 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.9e-08
Identity = 30/37 (81.08%), Postives = 32/37 (86.49%), Query Frame = 0 

Query: 1  MFEFKLELIKGCGMTSIDYWNIPLLHIIGVSWRVIKL 38
          MFEFKLELI+GCG TS DYWNI LLH + VSWRVIKL
Sbjct: 4  MFEFKLELIRGCGTTSTDYWNILLLHRMSVSWRVIKL 40

[Close]
BLAST of MELO3C030057 vs. ExPASy TrEMBL
Match: A0A5D3DCW2 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold609G00030 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 6.0e-07
Identity = 27/34 (79.41%), Postives = 29/34 (85.29%), Query Frame = 0 

Query: 2  FEFKLELIKGCGMTSIDYWNIPLLHIIGVSWRVI 36
          FEFKLELI+GCG TS D WN PLLH +GVSWRVI
Sbjct: 5  FEFKLELIRGCGTTSADCWNTPLLHRMGVSWRVI 38

The following BLAST results are available for this feature:
BLAST of MELO3C030057 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0051834.13.9e-0881.08uncharacterized protein E6C27_scaffold60G002600 [Cucumis melo var. makuwa] >TYK2... [more]
KAA0051873.11.2e-0679.41CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK21365.1 CACTA en-... [more]
BLAST of MELO3C030057 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C030057 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DCW31.9e-0881.08Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3DCW26.0e-0779.41CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
BLAST of MELO3C030057 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C030057.1MELO3C030057.1mRNA