MELO3C030039.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C030039.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionGag/pol protein
Locationchr03: 20365644 .. 20365894 (+)
RNA-Seq ExpressionMELO3C030039.jh1
SyntenyMELO3C030039.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTAAGGGGAAGGAAGTGGAAGCAAATGTTGCTACCACAGAGAAAAAGTTAGTGGGAGGGTCTTCCTTTAAGACTAGAGTTGGAACTTTAAATATGAAGAAAAAGAGAAAGGGGAAGAATCCCAAGAATAGTGAGGGAAAGAAAGTTGCTAAAGGTAAATGTTACCATTGCAACATTTGGTAAATGTTACCATTGTCTTGAGGTAAGTTATAGAGGACTTCAAAATGAAGATTTTAATATAAAAAACT

mRNA sequence

ATGGGTAAGGGGAAGGAAGTGGAAGCAAATGTTGCTACCACAGAGAAAAAGTTAGTGGGAGGGTCTTCCTTTAAGACTAGAGTTGGAACTTTAAATATGAAGAAAAAGAGAAAGGGGAAGAATCCCAAGAATAGTGAGGGAAAGAAAGTTGCTAAAGGTAAATGTTACCATTGCAACATTTGGTAAATGTTACCATTGTCTTGAGGTAAGTTATAGAGGACTTCAAAATGAAGATTTTAATATAAAAAACT

Coding sequence (CDS)

ATGGGTAAGGGGAAGGAAGTGGAAGCAAATGTTGCTACCACAGAGAAAAAGTTAGTGGGAGGGTCTTCCTTTAAGACTAGAGTTGGAACTTTAAATATGAAGAAAAAGAGAAAGGGGAAGAATCCCAAGAATAGTGAGGGAAAGAAAGTTGCTAAAGGTAAATGTTACCATTGCAACATTTGGTAA

Protein sequence

MGKGKEVEANVATTEKKLVGGSSFKTRVGTLNMKKKRKGKNPKNSEGKKVAKGKCYHCNIW
Homology
BLAST of MELO3C030039.jh1 vs. NCBI nr
Match: TYK16526.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 106 bits (264), Expect = 2.92e-28
Identity = 55/59 (93.22%), Postives = 56/59 (94.92%), Query Frame = 0

Query: 1  MGKGKEVEANVATTEKKLVGGSSFKTRVGTLNMKKKRKGKNPKNSEGKKVAKGKCYHCN 59
          MGKGKEVEANVATTEK+LVGGSSFKTR GTLNMKKKRK K PKNSEGKKVAKGKCYHCN
Sbjct: 1  MGKGKEVEANVATTEKELVGGSSFKTRDGTLNMKKKRKEKTPKNSEGKKVAKGKCYHCN 59

BLAST of MELO3C030039.jh1 vs. NCBI nr
Match: KAA0046834.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 114 bits (286), Expect = 7.26e-28
Identity = 59/60 (98.33%), Postives = 59/60 (98.33%), Query Frame = 0

Query: 1  MGKGKEVEANVATTEKKLVGGSSFKTRVGTLNMKKKRKGKNPKNSEGKKVAKGKCYHCNI 60
          MGKGKEVEANVATTEKKLVGGSS KTRVGTLNMKKKRKGKNPKNSEGKKVAKGKCYHCNI
Sbjct: 1  MGKGKEVEANVATTEKKLVGGSSSKTRVGTLNMKKKRKGKNPKNSEGKKVAKGKCYHCNI 60

BLAST of MELO3C030039.jh1 vs. NCBI nr
Match: KAA0025761.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK09693.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 104 bits (259), Expect = 4.21e-27
Identity = 54/59 (91.53%), Postives = 56/59 (94.92%), Query Frame = 0

Query: 1  MGKGKEVEANVATTEKKLVGGSSFKTRVGTLNMKKKRKGKNPKNSEGKKVAKGKCYHCN 59
          MGKGKE+EANVATTEKKLVGGSS KTRVGTLNMKKKRK K PKNSEGKKVAKGKCYHC+
Sbjct: 37 MGKGKEMEANVATTEKKLVGGSSSKTRVGTLNMKKKRKRKTPKNSEGKKVAKGKCYHCH 95

BLAST of MELO3C030039.jh1 vs. NCBI nr
Match: TYK04285.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 105 bits (263), Expect = 7.02e-27
Identity = 54/59 (91.53%), Postives = 55/59 (93.22%), Query Frame = 0

Query: 1   MGKGKEVEANVATTEKKLVGGSSFKTRVGTLNMKKKRKGKNPKNSEGKKVAKGKCYHCN 59
           MGKGKEVE NV TTEK+LVGGSS KTRVGTLNMKKKRKGK PKNSEGKKVAKGKCYHCN
Sbjct: 103 MGKGKEVETNVGTTEKELVGGSSSKTRVGTLNMKKKRKGKTPKNSEGKKVAKGKCYHCN 161

BLAST of MELO3C030039.jh1 vs. NCBI nr
Match: KAA0047525.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK26494.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 103 bits (256), Expect = 1.79e-26
Identity = 53/59 (89.83%), Postives = 56/59 (94.92%), Query Frame = 0

Query: 1   MGKGKEVEANVATTEKKLVGGSSFKTRVGTLNMKKKRKGKNPKNSEGKKVAKGKCYHCN 59
           +GKGKEVEANVATTEK+LVGGSS KTRVGTLNMKKKRKGK PKNS+GKKVAK KCYHCN
Sbjct: 47  IGKGKEVEANVATTEKELVGGSSSKTRVGTLNMKKKRKGKTPKNSKGKKVAKDKCYHCN 105

BLAST of MELO3C030039.jh1 vs. ExPASy TrEMBL
Match: A0A5D3D1G4 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G003400 PE=4 SV=1)

HSP 1 Score: 106 bits (264), Expect = 1.41e-28
Identity = 55/59 (93.22%), Postives = 56/59 (94.92%), Query Frame = 0

Query: 1  MGKGKEVEANVATTEKKLVGGSSFKTRVGTLNMKKKRKGKNPKNSEGKKVAKGKCYHCN 59
          MGKGKEVEANVATTEK+LVGGSSFKTR GTLNMKKKRK K PKNSEGKKVAKGKCYHCN
Sbjct: 1  MGKGKEVEANVATTEKELVGGSSFKTRDGTLNMKKKRKEKTPKNSEGKKVAKGKCYHCN 59

BLAST of MELO3C030039.jh1 vs. ExPASy TrEMBL
Match: A0A5A7TUT1 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold216G001310 PE=4 SV=1)

HSP 1 Score: 114 bits (286), Expect = 3.52e-28
Identity = 59/60 (98.33%), Postives = 59/60 (98.33%), Query Frame = 0

Query: 1  MGKGKEVEANVATTEKKLVGGSSFKTRVGTLNMKKKRKGKNPKNSEGKKVAKGKCYHCNI 60
          MGKGKEVEANVATTEKKLVGGSS KTRVGTLNMKKKRKGKNPKNSEGKKVAKGKCYHCNI
Sbjct: 1  MGKGKEVEANVATTEKKLVGGSSSKTRVGTLNMKKKRKGKNPKNSEGKKVAKGKCYHCNI 60

BLAST of MELO3C030039.jh1 vs. ExPASy TrEMBL
Match: A0A5A7SND1 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold447G001050 PE=4 SV=1)

HSP 1 Score: 104 bits (259), Expect = 2.04e-27
Identity = 54/59 (91.53%), Postives = 56/59 (94.92%), Query Frame = 0

Query: 1  MGKGKEVEANVATTEKKLVGGSSFKTRVGTLNMKKKRKGKNPKNSEGKKVAKGKCYHCN 59
          MGKGKE+EANVATTEKKLVGGSS KTRVGTLNMKKKRK K PKNSEGKKVAKGKCYHC+
Sbjct: 37 MGKGKEMEANVATTEKKLVGGSSSKTRVGTLNMKKKRKRKTPKNSEGKKVAKGKCYHCH 95

BLAST of MELO3C030039.jh1 vs. ExPASy TrEMBL
Match: A0A5D3BYQ2 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold527G00100 PE=4 SV=1)

HSP 1 Score: 105 bits (263), Expect = 3.40e-27
Identity = 54/59 (91.53%), Postives = 55/59 (93.22%), Query Frame = 0

Query: 1   MGKGKEVEANVATTEKKLVGGSSFKTRVGTLNMKKKRKGKNPKNSEGKKVAKGKCYHCN 59
           MGKGKEVE NV TTEK+LVGGSS KTRVGTLNMKKKRKGK PKNSEGKKVAKGKCYHCN
Sbjct: 103 MGKGKEVETNVGTTEKELVGGSSSKTRVGTLNMKKKRKGKTPKNSEGKKVAKGKCYHCN 161

BLAST of MELO3C030039.jh1 vs. ExPASy TrEMBL
Match: A0A5A7U1L7 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G00660 PE=4 SV=1)

HSP 1 Score: 103 bits (256), Expect = 8.66e-27
Identity = 53/59 (89.83%), Postives = 56/59 (94.92%), Query Frame = 0

Query: 1   MGKGKEVEANVATTEKKLVGGSSFKTRVGTLNMKKKRKGKNPKNSEGKKVAKGKCYHCN 59
           +GKGKEVEANVATTEK+LVGGSS KTRVGTLNMKKKRKGK PKNS+GKKVAK KCYHCN
Sbjct: 47  IGKGKEVEANVATTEKELVGGSSSKTRVGTLNMKKKRKGKTPKNSKGKKVAKDKCYHCN 105

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK16526.12.92e-2893.22gag/pol protein [Cucumis melo var. makuwa][more]
KAA0046834.17.26e-2898.33CACTA en-spm transposon protein [Cucumis melo var. makuwa][more]
KAA0025761.14.21e-2791.53gag/pol protein [Cucumis melo var. makuwa] >TYK09693.1 gag/pol protein [Cucumis ... [more]
TYK04285.17.02e-2791.53gag/pol protein [Cucumis melo var. makuwa][more]
KAA0047525.11.79e-2689.83gag/pol protein [Cucumis melo var. makuwa] >TYK26494.1 gag/pol protein [Cucumis ... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3D1G41.41e-2893.22Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G00340... [more]
A0A5A7TUT13.52e-2898.33CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
A0A5A7SND12.04e-2791.53Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold447G0010... [more]
A0A5D3BYQ23.40e-2791.53Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold527G0010... [more]
A0A5A7U1L78.66e-2789.83Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G0066... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 23..49

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C030039.jh1.t1MELO3C030039.jh1.t1mRNA