MELO3C029996 (gene) Melon (DHL92) v4

Overview
NameMELO3C029996
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionDNA-directed RNA polymerase
Locationchr07: 5173406 .. 5173719 (+)
RNA-Seq ExpressionMELO3C029996
SyntenyMELO3C029996
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CGGACTCCCTTTACTTGTAGGAGTACATCTTGGATCTGCCGATTATGTTATGGACGAAGTCCTACTCACGGGGACCTGGTAGAATTGGGAGAAGCCGTAGGTATTATTGCGGGTCAATCTATTGGAGAACCGGGTACTCAACTAACATTAAGAACTTTTCATACCGGCGGAGTATTCACAGGGGGGACTGCAGAACATATACGAGCTTCTTCTAATGGCAAAATCAAATTCAATGAGAATTTGGTTCATCCCACACGTACACGCCATGGGCATCCTGCTTTTTTATGTTATATAGACTTGTATGTAACTATTGA

mRNA sequence

CGGACTCCCTTTACTTGTAGGAGTACATCTTGGATCTGCCGATTATGTTATGGACGAAGTCCTACTCACGGGGACCTGGTAGAATTGGGAGAAGCCGTAGGTATTATTGCGGGTCAATCTATTGGAGAACCGGGTACTCAACTAACATTAAGAACTTTTCATACCGGCGGAGTATTCACAGGGGGGACTGCAGAACATATACGAGCTTCTTCTAATGGCAAAATCAAATTCAATGAGAATTTGGTTCATCCCACACGTACACGCCATGGGCATCCTGCTTTTTTATGTTATATAGACTTGTATGTAACTATTGA

Coding sequence (CDS)

ATGTTATGGACGAAGTCCTACTCACGGGGACCTGGTAGAATTGGGAGAAGCCGTAGGTATTATTGCGGGTCAATCTATTGGAGAACCGGGTACTCAACTAACATTAAGAACTTTTCATACCGGCGGAGTATTCACAGGGGGGACTGCAGAACATATACGAGCTTCTTCTAA

Protein sequence

MLWTKSYSRGPGRIGRSRRYYCGSIYWRTGYSTNIKNFSYRRSIHRGDCRTYTSFF
Homology
BLAST of MELO3C029996 vs. NCBI nr
Match: QCP70921.1 (RNA polymerase beta subunit [Plantago ovata])

HSP 1 Score: 79.7 bits (195), Expect = 8.7e-12
Identity = 38/51 (74.51%), Postives = 39/51 (76.47%), Query Frame = 0

Query: 1   MLWTKSYSRGPGRIGRSRRYYCGSIYWRTGYSTNIKNFSYRRSIHRGDCRT 52
           MLW +SYSR P RIGR  RYYC  I WRT YS NIKNFSYRRSIH G CRT
Sbjct: 294 MLWPESYSRRPCRIGRGCRYYCRPIDWRTRYSINIKNFSYRRSIHGGYCRT 344

BLAST of MELO3C029996 vs. NCBI nr
Match: CAB4320153.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 73.6 bits (179), Expect = 6.3e-10
Identity = 34/44 (77.27%), Postives = 38/44 (86.36%), Query Frame = 0

Query: 4   TKSYSRGPGRIGRSRRYYCGSIYWRTGYSTNIKNFSYRRSIHRG 48
           ++ +S  PGRIGRS  YYCGSIYWRTG+STNIKNFSYR SIHRG
Sbjct: 544 SEPHSWRPGRIGRSCGYYCGSIYWRTGHSTNIKNFSYRWSIHRG 587

BLAST of MELO3C029996 vs. NCBI nr
Match: CAB4305937.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 73.6 bits (179), Expect = 6.3e-10
Identity = 34/44 (77.27%), Postives = 38/44 (86.36%), Query Frame = 0

Query: 4   TKSYSRGPGRIGRSRRYYCGSIYWRTGYSTNIKNFSYRRSIHRG 48
           ++ +S  PGRIGRS  YYCGSIYWRTG+STNIKNFSYR SIHRG
Sbjct: 447 SEPHSWRPGRIGRSCGYYCGSIYWRTGHSTNIKNFSYRWSIHRG 490

BLAST of MELO3C029996 vs. NCBI nr
Match: CAB4299884.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 73.6 bits (179), Expect = 6.3e-10
Identity = 34/44 (77.27%), Postives = 38/44 (86.36%), Query Frame = 0

Query: 4   TKSYSRGPGRIGRSRRYYCGSIYWRTGYSTNIKNFSYRRSIHRG 48
           ++ +S  PGRIGRS  YYCGSIYWRTG+STNIKNFSYR SIHRG
Sbjct: 470 SEPHSWRPGRIGRSCGYYCGSIYWRTGHSTNIKNFSYRWSIHRG 513

BLAST of MELO3C029996 vs. NCBI nr
Match: KAF1862797.1 (hypothetical protein Lal_00040065 [Lupinus albus])

HSP 1 Score: 69.3 bits (168), Expect = 1.2e-08
Identity = 32/37 (86.49%), Postives = 33/37 (89.19%), Query Frame = 0

Query: 11  PGRIGRSRRYYCGSIYWRTGYSTNIKNFSYRRSIHRG 48
           PG IGRS RYYCGSIYWRT YSTNIKNFSYR SI+RG
Sbjct: 214 PGGIGRSCRYYCGSIYWRTRYSTNIKNFSYRWSIYRG 250

BLAST of MELO3C029996 vs. ExPASy TrEMBL
Match: A0A4P8JGS9 (DNA-directed RNA polymerase OS=Plantago ovata OX=185002 GN=rpoC2 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 4.2e-12
Identity = 38/51 (74.51%), Postives = 39/51 (76.47%), Query Frame = 0

Query: 1   MLWTKSYSRGPGRIGRSRRYYCGSIYWRTGYSTNIKNFSYRRSIHRGDCRT 52
           MLW +SYSR P RIGR  RYYC  I WRT YS NIKNFSYRRSIH G CRT
Sbjct: 294 MLWPESYSRRPCRIGRGCRYYCRPIDWRTRYSINIKNFSYRRSIHGGYCRT 344

BLAST of MELO3C029996 vs. ExPASy TrEMBL
Match: A0A6J5WKL9 (DNA-directed RNA polymerase OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS14636 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 3.0e-10
Identity = 34/44 (77.27%), Postives = 38/44 (86.36%), Query Frame = 0

Query: 4   TKSYSRGPGRIGRSRRYYCGSIYWRTGYSTNIKNFSYRRSIHRG 48
           ++ +S  PGRIGRS  YYCGSIYWRTG+STNIKNFSYR SIHRG
Sbjct: 470 SEPHSWRPGRIGRSCGYYCGSIYWRTGHSTNIKNFSYRWSIHRG 513

BLAST of MELO3C029996 vs. ExPASy TrEMBL
Match: A0A6J5X0Y3 (DNA-directed RNA polymerase OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS24045 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 3.0e-10
Identity = 34/44 (77.27%), Postives = 38/44 (86.36%), Query Frame = 0

Query: 4   TKSYSRGPGRIGRSRRYYCGSIYWRTGYSTNIKNFSYRRSIHRG 48
           ++ +S  PGRIGRS  YYCGSIYWRTG+STNIKNFSYR SIHRG
Sbjct: 447 SEPHSWRPGRIGRSCGYYCGSIYWRTGHSTNIKNFSYRWSIHRG 490

BLAST of MELO3C029996 vs. ExPASy TrEMBL
Match: A0A6J5Y6V4 (DNA-directed RNA polymerase subunit OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS48723 PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 3.0e-10
Identity = 34/44 (77.27%), Postives = 38/44 (86.36%), Query Frame = 0

Query: 4   TKSYSRGPGRIGRSRRYYCGSIYWRTGYSTNIKNFSYRRSIHRG 48
           ++ +S  PGRIGRS  YYCGSIYWRTG+STNIKNFSYR SIHRG
Sbjct: 544 SEPHSWRPGRIGRSCGYYCGSIYWRTGHSTNIKNFSYRWSIHRG 587

BLAST of MELO3C029996 vs. ExPASy TrEMBL
Match: A0A6A5LNT7 (DNA-directed RNA polymerase OS=Lupinus albus OX=3870 GN=Lal_00040065 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 5.7e-09
Identity = 32/37 (86.49%), Postives = 33/37 (89.19%), Query Frame = 0

Query: 11  PGRIGRSRRYYCGSIYWRTGYSTNIKNFSYRRSIHRG 48
           PG IGRS RYYCGSIYWRT YSTNIKNFSYR SI+RG
Sbjct: 214 PGGIGRSCRYYCGSIYWRTRYSTNIKNFSYRWSIYRG 250

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
QCP70921.18.7e-1274.51RNA polymerase beta subunit [Plantago ovata][more]
CAB4320153.16.3e-1077.27unnamed protein product [Prunus armeniaca][more]
CAB4305937.16.3e-1077.27unnamed protein product [Prunus armeniaca][more]
CAB4299884.16.3e-1077.27unnamed protein product [Prunus armeniaca][more]
KAF1862797.11.2e-0886.49hypothetical protein Lal_00040065 [Lupinus albus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A4P8JGS94.2e-1274.51DNA-directed RNA polymerase OS=Plantago ovata OX=185002 GN=rpoC2 PE=4 SV=1[more]
A0A6J5WKL93.0e-1077.27DNA-directed RNA polymerase OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS14636... [more]
A0A6J5X0Y33.0e-1077.27DNA-directed RNA polymerase OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS24045... [more]
A0A6J5Y6V43.0e-1077.27DNA-directed RNA polymerase subunit OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LO... [more]
A0A6A5LNT75.7e-0986.49DNA-directed RNA polymerase OS=Lupinus albus OX=3870 GN=Lal_00040065 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C029996.1MELO3C029996.1mRNA