MELO3C029963.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C029963.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionRetrotransposon protein
Locationchr03: 5402194 .. 5403084 (-)
RNA-Seq ExpressionMELO3C029963.jh1
SyntenyMELO3C029963.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDSstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATAGACAAACATTTCAATTCTAGGCCATTTACTTAGAACTATATCTGGGCTTTCGTCAACCGAGATTGTTGATGTTGAGGAAATGGTAGCAATGTTCTTACTCGTCCTTGCCCATGACATGAAGAACCACGTCATTCAACGGAAATTTGTACGATTCGGTGAGAGATAGTATCTCGACATTTTAACCTCGTATTATTGGTTGTGGTTCGACTATACGAGGAGTTGATAAAAAAACATGTTTCGATAACAAACAACTGCAATGATCAACGTTGGAAGTGTGTCGAGGTGGGCATGGTACAAGTTCACTGTATTTGACCTTTACGTATGTGGCATTTATTTCAGCATGTTTATGTAAACCTGCAGAATTGTCTTGGTGCGTTAGACGAGACATACATAAAGGTCAACATCCTCACAGCAGATCAACCTACATTCAGAACGAATAAGGGAGAAATTGCCACAAACGTATTGGGTGTATGCGACACGCAAGGGGATTTCGTTTACGTCCTCACTGGTTTGGAAGGATAAATGGTAGACTCGTGGATTCTACGGGATGCCCTTGCACGAGAAAATGGATTACAAGTGCCAAACGATATTTCTTATTTATAATAAAACTACACTGATTTCTACTTACATATTCAAAGCGCATAAACGAATGGTTTAAATAACAGGATATTATTATTTGTGCGATGTGGGTCATCCAAACGATGAGGGATTTCTCACCTGAGGCCAGTGGTACTACTTGTAAGAGTGGCATGGTGCCGAAAATGTGCCAACAAATACAAATGAGTACTTCAACATGAATCACTCTTCGGTAAGGAATGTGATTGAGCGCGCCTTCGATGTTTTTAAGGGTCGTTGGGCAATACTTCGTGGGAAGTCGTACTATC

mRNA sequence

ATGGATAGACAAACATTTCAATTCTAGGCCATTTACTTAGAACTATATCTGGGCTTTCGTCAACCGAGATTGTTGATGTTGAGGAAATGGTAGCAATGTTCTTACTCGTCCTTGCCCATGACATGAAGAACCACGTCATTCAACGGAAATTTGTACGATTCGGTGAGAGATAGTATCTCGACATTTTAACCTCGTATTATTGGTTGTGGTTCGACTATACGAGGAGTTGATAAAAAAACATGTTTCGATAACAAACAACTGCAATGATCAACGTTGGAAGTGTGTCGAGGTGGGCATGAATTGTCTTGGTGCGTTAGACGAGACATACATAAAGGTCAACATCCTCACAGCAGATCAACCTACATTCAGAACGAATAAGGGAGAAATTGCCACAAACGTATTGGGTGTATGCGACACGCAAGGGGATTTCGTTTACGTCCTCACTGGTTTGGAAGGATAAATGGTAGACTCGTGGATTCTACGGGATGCCCTTGCACGAGAAAATGGATTACAAGTGCCAAACGATATTTCTTATTTATAATAAAACTACACTGATTTCTACTTACATATTCAAAGCGCATAAACGAATGGTTTAAATAACAGGATATTATTATTTGTGCGATGTGGGTCATCCAAACGATGAGGGATTTCTCACCTGAGGCCAGTGGTACTACTTGTAAGAGTGGCATGGTGCCGAAAATGTGCCAACAAATACAAATGAGTACTTCAACATGAATCACTCTTCGGTAAGGAATGTGATTGAGCGCGCCTTCGATGTTTTTAAGGGTCGTTGGGCAATACTTCGTGGGAAGTCGTACTATC

Coding sequence (CDS)

ATGAATTGTCTTGGTGCGTTAGACGAGACATACATAAAGGTCAACATCCTCACAGCAGATCAACCTACATTCAGAACGAATAAGGGAGAAATTGCCACAAACGTATTGGGTGTATGCGACACGCAAGGGGATTTCGTTTACGTCCTCACTGGTTTGGAAGGATAA

Protein sequence

MNCLGALDETYIKVNILTADQPTFRTNKGEIATNVLGVCDTQGDFVYVLTGLEG
Homology
[Close]
BLAST of MELO3C029963.jh1 vs. NCBI nr
Match: KAA0050401.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 99.4 bits (246), Expect = 3.63e-23
Identity = 45/53 (84.91%), Postives = 48/53 (90.57%), Query Frame = 0 

Query: 2   NCLGALDETYIKVNILTADQPTFRTNKGEIATNVLGVCDTQGDFVYVLTGLEG 54
           NCLGALDETYIKVN+L  D+PTFRT KGEIATNVLGVCDT+GDFVYVL G EG
Sbjct: 135 NCLGALDETYIKVNVLAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEG 187

[Close]
BLAST of MELO3C029963.jh1 vs. NCBI nr
Match: KAA0067368.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 94.0 bits (232), Expect = 7.89e-23
Identity = 43/53 (81.13%), Postives = 46/53 (86.79%), Query Frame = 0 

Query: 2   NCLGALDETYIKVNILTADQPTFRTNKGEIATNVLGVCDTQGDFVYVLTGLEG 54
           NCLGALD TYIKVN+   D+PTFRT KGEIATNVLGVCDT+GDFVYVL G EG
Sbjct: 68  NCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEG 120

[Close]
BLAST of MELO3C029963.jh1 vs. NCBI nr
Match: TYK26508.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 93.6 bits (231), Expect = 1.12e-22
Identity = 42/53 (79.25%), Postives = 46/53 (86.79%), Query Frame = 0 

Query: 2   NCLGALDETYIKVNILTADQPTFRTNKGEIATNVLGVCDTQGDFVYVLTGLEG 54
           NCLGALD TYIKVN+   D+PTFRT KGEIATNVLGVCDT+GDF+YVL G EG
Sbjct: 68  NCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFIYVLAGWEG 120

[Close]
BLAST of MELO3C029963.jh1 vs. NCBI nr
Match: KAA0047131.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 92.4 bits (228), Expect = 1.50e-22
Identity = 42/53 (79.25%), Postives = 45/53 (84.91%), Query Frame = 0 

Query: 2  NCLGALDETYIKVNILTADQPTFRTNKGEIATNVLGVCDTQGDFVYVLTGLEG 54
          NCLG LD TYIKVN+   D+PTFRT KGEIATNVLGVCDT+GDFVYVL G EG
Sbjct: 34 NCLGTLDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEG 86

[Close]
BLAST of MELO3C029963.jh1 vs. NCBI nr
Match: KAA0058872.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK23749.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 94.0 bits (232), Expect = 3.48e-22
Identity = 43/53 (81.13%), Postives = 46/53 (86.79%), Query Frame = 0 

Query: 2   NCLGALDETYIKVNILTADQPTFRTNKGEIATNVLGVCDTQGDFVYVLTGLEG 54
           NCLGALD TYIKVN+   D+PTFRT KGEIATNVLGVCDT+GDFVYVL G EG
Sbjct: 136 NCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEG 188

[Close]
BLAST of MELO3C029963.jh1 vs. ExPASy TrEMBL
Match: A0A5A7UA39 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1166G00150 PE=3 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 1.76e-23
Identity = 45/53 (84.91%), Postives = 48/53 (90.57%), Query Frame = 0 

Query: 2   NCLGALDETYIKVNILTADQPTFRTNKGEIATNVLGVCDTQGDFVYVLTGLEG 54
           NCLGALDETYIKVN+L  D+PTFRT KGEIATNVLGVCDT+GDFVYVL G EG
Sbjct: 135 NCLGALDETYIKVNVLAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEG 187

[Close]
BLAST of MELO3C029963.jh1 vs. ExPASy TrEMBL
Match: A0A5A7VI07 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold40G00100 PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 3.82e-23
Identity = 43/53 (81.13%), Postives = 46/53 (86.79%), Query Frame = 0 

Query: 2   NCLGALDETYIKVNILTADQPTFRTNKGEIATNVLGVCDTQGDFVYVLTGLEG 54
           NCLGALD TYIKVN+   D+PTFRT KGEIATNVLGVCDT+GDFVYVL G EG
Sbjct: 68  NCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEG 120

[Close]
BLAST of MELO3C029963.jh1 vs. ExPASy TrEMBL
Match: A0A5D3DSM7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G00850 PE=3 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 5.42e-23
Identity = 42/53 (79.25%), Postives = 46/53 (86.79%), Query Frame = 0 

Query: 2   NCLGALDETYIKVNILTADQPTFRTNKGEIATNVLGVCDTQGDFVYVLTGLEG 54
           NCLGALD TYIKVN+   D+PTFRT KGEIATNVLGVCDT+GDF+YVL G EG
Sbjct: 68  NCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFIYVLAGWEG 120

[Close]
BLAST of MELO3C029963.jh1 vs. ExPASy TrEMBL
Match: A0A5A7U0K8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold32291G00010 PE=3 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 7.24e-23
Identity = 42/53 (79.25%), Postives = 45/53 (84.91%), Query Frame = 0 

Query: 2  NCLGALDETYIKVNILTADQPTFRTNKGEIATNVLGVCDTQGDFVYVLTGLEG 54
          NCLG LD TYIKVN+   D+PTFRT KGEIATNVLGVCDT+GDFVYVL G EG
Sbjct: 34 NCLGTLDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEG 86

[Close]
BLAST of MELO3C029963.jh1 vs. ExPASy TrEMBL
Match: A0A5A7USL9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1607G00680 PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.68e-22
Identity = 43/53 (81.13%), Postives = 46/53 (86.79%), Query Frame = 0 

Query: 2   NCLGALDETYIKVNILTADQPTFRTNKGEIATNVLGVCDTQGDFVYVLTGLEG 54
           NCLGALD TYIKVN+   D+PTFRT KGEIATNVLGVCDT+GDFVYVL G EG
Sbjct: 136 NCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEG 188

[Close]
BLAST of MELO3C029963.jh1 vs. TAIR 10
Match: AT5G28950.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 448 Blast hits to 446 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 31; Fungi - 21; Plants - 396; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 55.5 bits (132), Expect = 1.6e-08
Identity = 22/53 (41.51%), Postives = 36/53 (67.92%), Query Frame = 0 

Query: 2  NCLGALDETYIKVNILTADQPTFRTNKGEIATNVLGVCDTQGDFVYVLTGLEG 55
          +C+GA+D+T+I   +     P+FR  KG+I+ N+L  C+   +F+YVL+G EG
Sbjct: 24 DCVGAIDDTHIFAMVSQKKMPSFRNRKGDISQNMLAACNFDVEFMYVLSGWEG 76

The following BLAST results are available for this feature:
BLAST of MELO3C029963.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0050401.13.63e-2384.91retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0067368.17.89e-2381.13retrotransposon protein [Cucumis melo var. makuwa][more]
TYK26508.11.12e-2279.25retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0047131.11.50e-2279.25retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0058872.13.48e-2281.13retrotransposon protein [Cucumis melo var. makuwa] >TYK23749.1 retrotransposon p... [more]
BLAST of MELO3C029963.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C029963.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UA391.76e-2384.91Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7VI073.82e-2381.13Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3DSM75.42e-2379.25Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7U0K87.24e-2379.25Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7USL91.68e-2281.13Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of MELO3C029963.jh1 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G28950.11.6e-0841.51unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C029963.jh1.t1MELO3C029963.jh1.t1mRNA