MELO3C029963 (gene) Melon (DHL92) v4

Overview
NameMELO3C029963
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionRetrotransposon protein
Locationchr03: 5115638 .. 5116530 (-)
RNA-Seq ExpressionMELO3C029963
SyntenyMELO3C029963
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATAGACAAACATTCGCAATTCTAGGCCATTTACTTAGAACTATATTTGGGCTTTCGTCAACCGAGATTGTTGATGTTGAGGAAATGGTAGCAATGTTCTTACTCGTTCTTGCCCATGACATGAAGAACCACGTCATTCAACGGAAATTTGTACGATTCGGTGAGAGATAGTATCTCGAAATTTTAACCTCGTATTATTGGTTGTGGTTCGACTATACGAGGAGTTGATAAAAAAACATGTTCCGATAACAAACAACTGCAATGATCAACGTTGGAAGTGTGTCGAGGTGGGCATGGTACAAGTTCACTGTATTTGACCTTTTACGTATGTGGCATTTATTTCAGCATGTTTATGTAAACCTGCAGAATTGTCTTGGTGCGTTAGACGAGACATACATAAAGGTCAACATCCTCACAGCAGATCAACCTACATTCAGAACGAATAAGGGAGAAATTTCCACAAACGTACTGGGCGTGTGCGACACGCAAGGGGATTTCGTTTACGTCCTCATTGGTTTGGAAGGATAAATGGCAGAATCGTGGATTCTACAGGATGCCCTTGCACGAGAAAATGGATTACAAGTGCCAAGCGATATTTCTTATTTATAATAAAACTACACCGATTTCTACTTACATATTCAAAGCGCATAAACGAATGGTTTAAATAACAGGATATTATTATTTGTGCGATGCGGGTCATCCAAACAATGAGGGATTTCTCACCTGAGGCCAGTGGTACTACTTGTAAGAGTGGCATGGTGCTGAAAATGTGCCAACAAATACAAATGAGTACTTCAACATGAATCACTCTTCGGCAAGGAATGTGATTGAGTGCGCCTTCGATGTTTTTAAGGGTCGTTGGGCAATGCTTCGTGGGAAGTCGTACTATC

mRNA sequence

ATGGATAGACAAACATTCGCAATTCTAGGCCATTTACTTAGAACTATATTTGGGCTTTCGTCAACCGAGATTGTTGATGTTGAGGAAATGGTAGCAATGTTCTTACTCGTTCTTGCCCATGACATGAAGAACCACGTCATTCAACGGAAATTTGTACGATTCGGTGAGAGATAGTATCTCGAAATTTTAACCTCGTATTATTGGTTGTGGTTCGACTATACGAGGAGTTGATAAAAAAACATGTTCCGATAACAAACAACTGCAATGATCAACGTTGGAAGTGTGTCGAGGTGGGCATGAATTGTCTTGGTGCGTTAGACGAGACATACATAAAGGTCAACATCCTCACAGCAGATCAACCTACATTCAGAACGAATAAGGGAGAAATTTCCACAAACGTACTGGGCGTGTGCGACACGCAAGGGGATTTCGTTTACGTCCTCATTGGTTTGGAAGGATAAATGGCAGAATCGTGGATTCTACAGGATGCCCTTGCACGAGAAAATGGATTACAAGTGCCAAGCGATATTTCTTATTTATAATAAAACTACACCGATTTCTACTTACATATTCAAAGCGCATAAACGAATGGTTTAAATAACAGGATATTATTATTTGTGCGATGCGGGTCATCCAAACAATGAGGGATTTCTCACCTGAGGCCAGTGGTACTACTTGTAAGAGTGGCATGGTGCTGAAAATGTGCCAACAAATACAAATGAGTACTTCAACATGAATCACTCTTCGGCAAGGAATGTGATTGAGTGCGCCTTCGATGTTTTTAAGGGTCGTTGGGCAATGCTTCGTGGGAAGTCGTACTATC

Coding sequence (CDS)

ATGGATAGACAAACATTCGCAATTCTAGGCCATTTACTTAGAACTATATTTGGGCTTTCGTCAACCGAGATTGTTGATGTTGAGGAAATGGTAGCAATGTTCTTACTCGTTCTTGCCCATGACATGAAGAACCACGTCATTCAACGGAAATTTGTACGATTCGGTGAGAGATAG

Protein sequence

MDRQTFAILGHLLRTIFGLSSTEIVDVEEMVAMFLLVLAHDMKNHVIQRKFVRFGER
Homology
[Close]
BLAST of MELO3C029963 vs. NCBI nr
Match: KAA0066981.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ96790.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 94.7 bits (234), Expect = 2.7e-16
Identity = 48/56 (85.71%), Postives = 52/56 (92.86%), Query Frame = 0 

Query: 1   MDRQTFAILGHLLRTIFGLSSTEIVDVEEMVAMFLLVLAHDMKNHVIQRKFVRFGE 57
           MDRQ FAIL HLLRT+ GLSSTEIVDVEE+VAMFL VLAHD+KNHVIQR+FVRFGE
Sbjct: 67  MDRQKFAILCHLLRTVSGLSSTEIVDVEEIVAMFLPVLAHDVKNHVIQREFVRFGE 122

[Close]
BLAST of MELO3C029963 vs. NCBI nr
Match: TYK30376.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 94.4 bits (233), Expect = 3.5e-16
Identity = 48/56 (85.71%), Postives = 52/56 (92.86%), Query Frame = 0 

Query: 1  MDRQTFAILGHLLRTIFGLSSTEIVDVEEMVAMFLLVLAHDMKNHVIQRKFVRFGE 57
          MDR+TFAIL HLLRT+ GLSSTEIVDVEEMVAMFL VL+HD+KN VIQRKFVRFGE
Sbjct: 40 MDRRTFAILCHLLRTVSGLSSTEIVDVEEMVAMFLHVLSHDVKNRVIQRKFVRFGE 95

[Close]
BLAST of MELO3C029963 vs. NCBI nr
Match: KAA0032818.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 94.4 bits (233), Expect = 3.5e-16
Identity = 48/56 (85.71%), Postives = 52/56 (92.86%), Query Frame = 0 

Query: 1  MDRQTFAILGHLLRTIFGLSSTEIVDVEEMVAMFLLVLAHDMKNHVIQRKFVRFGE 57
          MDR+TFAIL HLLRT+ GLSSTEIVDVEEMVAMFL VL+HD+KN VIQRKFVRFGE
Sbjct: 40 MDRRTFAILCHLLRTVSGLSSTEIVDVEEMVAMFLHVLSHDVKNRVIQRKFVRFGE 95

[Close]
BLAST of MELO3C029963 vs. NCBI nr
Match: TYK14238.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 93.6 bits (231), Expect = 5.9e-16
Identity = 47/56 (83.93%), Postives = 52/56 (92.86%), Query Frame = 0 

Query: 1  MDRQTFAILGHLLRTIFGLSSTEIVDVEEMVAMFLLVLAHDMKNHVIQRKFVRFGE 57
          MDR+TFAIL HLLRT+ GLSSTEIVD+EEMVAMFL VLAHD+KN VIQR+FVRFGE
Sbjct: 1  MDRRTFAILCHLLRTVSGLSSTEIVDIEEMVAMFLHVLAHDVKNRVIQREFVRFGE 56

[Close]
BLAST of MELO3C029963 vs. NCBI nr
Match: TYK28297.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 92.8 bits (229), Expect = 1.0e-15
Identity = 47/56 (83.93%), Postives = 51/56 (91.07%), Query Frame = 0 

Query: 1  MDRQTFAILGHLLRTIFGLSSTEIVDVEEMVAMFLLVLAHDMKNHVIQRKFVRFGE 57
          MDR+TFAIL HLLR + GLSSTEIVDVEEMVAMFL V+AHDMKNHVIQR+FVR GE
Sbjct: 40 MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVIAHDMKNHVIQREFVRSGE 95

[Close]
BLAST of MELO3C029963 vs. ExPASy TrEMBL
Match: A0A5D3BAB2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold233G00040 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.3e-16
Identity = 48/56 (85.71%), Postives = 52/56 (92.86%), Query Frame = 0 

Query: 1   MDRQTFAILGHLLRTIFGLSSTEIVDVEEMVAMFLLVLAHDMKNHVIQRKFVRFGE 57
           MDRQ FAIL HLLRT+ GLSSTEIVDVEE+VAMFL VLAHD+KNHVIQR+FVRFGE
Sbjct: 67  MDRQKFAILCHLLRTVSGLSSTEIVDVEEIVAMFLPVLAHDVKNHVIQREFVRFGE 122

[Close]
BLAST of MELO3C029963 vs. ExPASy TrEMBL
Match: A0A5D3E3B1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold575G00430 PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.7e-16
Identity = 48/56 (85.71%), Postives = 52/56 (92.86%), Query Frame = 0 

Query: 1  MDRQTFAILGHLLRTIFGLSSTEIVDVEEMVAMFLLVLAHDMKNHVIQRKFVRFGE 57
          MDR+TFAIL HLLRT+ GLSSTEIVDVEEMVAMFL VL+HD+KN VIQRKFVRFGE
Sbjct: 40 MDRRTFAILCHLLRTVSGLSSTEIVDVEEMVAMFLHVLSHDVKNRVIQRKFVRFGE 95

[Close]
BLAST of MELO3C029963 vs. ExPASy TrEMBL
Match: A0A5A7SQJ7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold708G00720 PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.7e-16
Identity = 48/56 (85.71%), Postives = 52/56 (92.86%), Query Frame = 0 

Query: 1  MDRQTFAILGHLLRTIFGLSSTEIVDVEEMVAMFLLVLAHDMKNHVIQRKFVRFGE 57
          MDR+TFAIL HLLRT+ GLSSTEIVDVEEMVAMFL VL+HD+KN VIQRKFVRFGE
Sbjct: 40 MDRRTFAILCHLLRTVSGLSSTEIVDVEEMVAMFLHVLSHDVKNRVIQRKFVRFGE 95

[Close]
BLAST of MELO3C029963 vs. ExPASy TrEMBL
Match: A0A5D3CSR0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1121G00200 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 2.9e-16
Identity = 47/56 (83.93%), Postives = 52/56 (92.86%), Query Frame = 0 

Query: 1  MDRQTFAILGHLLRTIFGLSSTEIVDVEEMVAMFLLVLAHDMKNHVIQRKFVRFGE 57
          MDR+TFAIL HLLRT+ GLSSTEIVD+EEMVAMFL VLAHD+KN VIQR+FVRFGE
Sbjct: 1  MDRRTFAILCHLLRTVSGLSSTEIVDIEEMVAMFLHVLAHDVKNRVIQREFVRFGE 56

[Close]
BLAST of MELO3C029963 vs. ExPASy TrEMBL
Match: A0A5A7U2Q6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold61G001210 PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 4.9e-16
Identity = 47/56 (83.93%), Postives = 51/56 (91.07%), Query Frame = 0 

Query: 1  MDRQTFAILGHLLRTIFGLSSTEIVDVEEMVAMFLLVLAHDMKNHVIQRKFVRFGE 57
          MDR+TFAIL HLLR + GLSSTEIVDVEEMVAMFL V+AHDMKNHVIQR+FVR GE
Sbjct: 40 MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVIAHDMKNHVIQREFVRSGE 95

The following BLAST results are available for this feature:
BLAST of MELO3C029963 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0066981.12.7e-1685.71retrotransposon protein [Cucumis melo var. makuwa] >TYJ96790.1 retrotransposon p... [more]
TYK30376.13.5e-1685.71retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0032818.13.5e-1685.71retrotransposon protein [Cucumis melo var. makuwa][more]
TYK14238.15.9e-1683.93retrotransposon protein [Cucumis melo var. makuwa][more]
TYK28297.11.0e-1583.93retrotransposon protein [Cucumis melo var. makuwa][more]
BLAST of MELO3C029963 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C029963 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BAB21.3e-1685.71Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3E3B11.7e-1685.71Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7SQJ71.7e-1685.71Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3CSR02.9e-1683.93Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7U2Q64.9e-1683.93Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of MELO3C029963 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C029963.1MELO3C029963.1mRNA