MELO3C029955 (gene) Melon (DHL92) v4

Overview
NameMELO3C029955
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionCharged multivesicular body protein 7 isoform X1
Locationchr03: 26436974 .. 26437330 (+)
RNA-Seq ExpressionMELO3C029955
SyntenyMELO3C029955
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCGCAGGCCCCCCACTCTCATCTTCTTCTTCGAAATCACACGGCTGCCGCCGCCCTTGCCTCTCTTTTCTCCATTGAGATCTCCGCGCGACAATCTCCCTCCGTCCGTCAAAGCCGCCATCGTCACCTTAGTTCTCCGTTCGTCATTAGCCCAAGTTGCCACATTCCGAGCTGCTCCCTTTTTCGTCAGCCATCTCCTCTGTGTCGCGACATCCGAATCTGAAGCGAGTGGATTGTGCCTGCTCCAATCGGTGTTTGTCCACAAAGCTCCTGCCGTTGTCACATCTCCACGAACCCAACCGCCGTCACGATCTCTCATTCGCACGAAGCTTGTTTCACCATCCATCCTTTTCCGTAG

mRNA sequence

CCGCAGGCCCCCCACTCTCATCTTCTTCTTCGAAATCACACGGCTGCCGCCGCCCTTGCCTCTCTTTTCTCCATTGAGATCTCCGCGCGACAATCTCCCTCCGTCCGTCAAAGCCGCCATCGTCACCTTAGTTCTCCGTTCGTCATTAGCCCAAGTTGCCACATTCCGAGCTGCTCCCTTTTTCGTCAGCCATCTCCTCTGTGTCGCGACATCCGAATCTGAAGCGAGTGGATTGTGCCTGCTCCAATCGGTGTTTGTCCACAAAGCTCCTGCCGTTGTCACATCTCCACGAACCCAACCGCCGTCACGATCTCTCATTCGCACGAAGCTTGTTTCACCATCCATCCTTTTCCGTAG

Coding sequence (CDS)

CGCAGGCCCCCCACTCTCATCTTCTTCTTCGAAATCACACGGCTGCCGCCGCCCTTGCCTCTCTTTTCTCCATTGAGATCTCCGCGCGACAATCTCCCTCCGTCCGTCAAAGCCGCCATCGTCACCTTAGTTCTCCGTTCGTCATTAGCCCAAGTTGCCACATTCCGAGCTGCTCCCTTTTTCGTCAGCCATCTCCTCTGTGTCGCGACATCCGAATCTGAAGCGAGTGGATTGTGCCTGCTCCAATCGGTGTTTGTCCACAAAGCTCCTGCCGTTGTCACATCTCCACGAACCCAACCGCCGTCACGATCTCTCATTCGCACGAAGCTTGTTTCACCATCCATCCTTTTCCGT

Protein sequence

RRPPTLIFFFEITRLPPPLPLFSPLRSPRDNLPPSVKAAIVTLVLRSSLAQVATFRAAPFFVSHLLCVATSESEASGLCLLQSVFVHKAPAVVTSPRTQPPSRSLIRTKLVSPSILFR
Homology
BLAST of MELO3C029955 vs. NCBI nr
Match: KAA0059932.1 (GPI mannosyltransferase 1-like isoform X1 [Cucumis melo var. makuwa] >TYK24878.1 GPI mannosyltransferase 1-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 82.8 bits (203), Expect = 2.2e-12
Identity = 51/72 (70.83%), Postives = 57/72 (79.17%), Query Frame = 0

Query: 47  SSLAQVATFRAAPFFVSHLLCVATSESEASGLCLLQSVFVHKA-PAVVTSPRTQ-PPSRS 106
           SSLAQ AT RAAP  VSHLL V T  S+ASGLCLLQ +FVH+A  AVV SPRTQ PPSRS
Sbjct: 221 SSLAQAATSRAAPLSVSHLLYVGTFGSKASGLCLLQPMFVHEASTAVVASPRTQLPPSRS 280

Query: 107 LIRTKLVSPSIL 117
            IR ++V+PSIL
Sbjct: 281 PIRMEIVAPSIL 292

BLAST of MELO3C029955 vs. NCBI nr
Match: TYK03645.1 (charged multivesicular body protein 7 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 81.3 bits (199), Expect = 6.3e-12
Identity = 46/72 (63.89%), Postives = 54/72 (75.00%), Query Frame = 0

Query: 49  LAQVATFRAAPFFVSHLLCVATSESEASGLCLLQSVFVHKAPAVV-TSPRTQP-PSRSLI 108
           L Q AT RA P FVSH LC+A    +ASGLCLLQ +FV++ P VV TSPRTQP PSRS I
Sbjct: 82  LPQAATLRAVPLFVSHFLCIAMFGFKASGLCLLQPMFVYEVPTVVLTSPRTQPMPSRSPI 141

Query: 109 RTKLVSPSILFR 119
           R +L++PSIL R
Sbjct: 142 RMELIAPSILLR 153

BLAST of MELO3C029955 vs. NCBI nr
Match: KAA0062299.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 78.6 bits (192), Expect = 4.1e-11
Identity = 47/68 (69.12%), Postives = 53/68 (77.94%), Query Frame = 0

Query: 53   ATFRAAPFFVSHLLCVATSESEASGLCLLQSVFVHKAP-AVVTSPRTQ-PPSRSLIRTKL 112
            AT R AP  VSHLL +ATSESE SGLCLLQ VF+H+A   VVTSPRT+ PPSRS I  +L
Sbjct: 950  ATPRVAPLSVSHLLYIATSESEVSGLCLLQPVFIHEASIVVVTSPRTKPPPSRSPICMEL 1009

Query: 113  VSPSILFR 119
            V+PSIL R
Sbjct: 1010 VAPSILLR 1017

BLAST of MELO3C029955 vs. NCBI nr
Match: KAA0050041.1 (charged multivesicular body protein 7 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 78.6 bits (192), Expect = 4.1e-11
Identity = 46/74 (62.16%), Postives = 55/74 (74.32%), Query Frame = 0

Query: 47  SSLAQVATFRAAPFFVSHLLCVATSESEASGLCLLQSVFVHKAPAVV-TSPRTQP-PSRS 106
           S LAQ AT RA P  VSHLLC+A    +ASGLCLLQ +FV+++P VV T PRTQP  SRS
Sbjct: 80  SWLAQAATLRAVPLSVSHLLCIAMFRFKASGLCLLQPMFVYESPTVVLTPPRTQPMSSRS 139

Query: 107 LIRTKLVSPSILFR 119
            IR +L++PSIL R
Sbjct: 140 PIRMELIAPSILLR 153

BLAST of MELO3C029955 vs. ExPASy TrEMBL
Match: A0A5D3DMR1 (GPI mannosyltransferase 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold184G001490 PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 1.1e-12
Identity = 51/72 (70.83%), Postives = 57/72 (79.17%), Query Frame = 0

Query: 47  SSLAQVATFRAAPFFVSHLLCVATSESEASGLCLLQSVFVHKA-PAVVTSPRTQ-PPSRS 106
           SSLAQ AT RAAP  VSHLL V T  S+ASGLCLLQ +FVH+A  AVV SPRTQ PPSRS
Sbjct: 221 SSLAQAATSRAAPLSVSHLLYVGTFGSKASGLCLLQPMFVHEASTAVVASPRTQLPPSRS 280

Query: 107 LIRTKLVSPSIL 117
            IR ++V+PSIL
Sbjct: 281 PIRMEIVAPSIL 292

BLAST of MELO3C029955 vs. ExPASy TrEMBL
Match: A0A5D3BX22 (Charged multivesicular body protein 7 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1369G00750 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 3.1e-12
Identity = 46/72 (63.89%), Postives = 54/72 (75.00%), Query Frame = 0

Query: 49  LAQVATFRAAPFFVSHLLCVATSESEASGLCLLQSVFVHKAPAVV-TSPRTQP-PSRSLI 108
           L Q AT RA P FVSH LC+A    +ASGLCLLQ +FV++ P VV TSPRTQP PSRS I
Sbjct: 82  LPQAATLRAVPLFVSHFLCIAMFGFKASGLCLLQPMFVYEVPTVVLTSPRTQPMPSRSPI 141

Query: 109 RTKLVSPSILFR 119
           R +L++PSIL R
Sbjct: 142 RMELIAPSILLR 153

BLAST of MELO3C029955 vs. ExPASy TrEMBL
Match: A0A5A7V9C3 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G00450 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 2.0e-11
Identity = 47/68 (69.12%), Postives = 53/68 (77.94%), Query Frame = 0

Query: 53   ATFRAAPFFVSHLLCVATSESEASGLCLLQSVFVHKAP-AVVTSPRTQ-PPSRSLIRTKL 112
            AT R AP  VSHLL +ATSESE SGLCLLQ VF+H+A   VVTSPRT+ PPSRS I  +L
Sbjct: 950  ATPRVAPLSVSHLLYIATSESEVSGLCLLQPVFIHEASIVVVTSPRTKPPPSRSPICMEL 1009

Query: 113  VSPSILFR 119
            V+PSIL R
Sbjct: 1010 VAPSILLR 1017

BLAST of MELO3C029955 vs. ExPASy TrEMBL
Match: A0A5A7U8W2 (Charged multivesicular body protein 7 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00170 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 2.0e-11
Identity = 46/74 (62.16%), Postives = 55/74 (74.32%), Query Frame = 0

Query: 47  SSLAQVATFRAAPFFVSHLLCVATSESEASGLCLLQSVFVHKAPAVV-TSPRTQP-PSRS 106
           S LAQ AT RA P  VSHLLC+A    +ASGLCLLQ +FV+++P VV T PRTQP  SRS
Sbjct: 80  SWLAQAATLRAVPLSVSHLLCIAMFRFKASGLCLLQPMFVYESPTVVLTPPRTQPMSSRS 139

Query: 107 LIRTKLVSPSILFR 119
            IR +L++PSIL R
Sbjct: 140 PIRMELIAPSILLR 153

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0059932.12.2e-1270.83GPI mannosyltransferase 1-like isoform X1 [Cucumis melo var. makuwa] >TYK24878.1... [more]
TYK03645.16.3e-1263.89charged multivesicular body protein 7 isoform X1 [Cucumis melo var. makuwa][more]
KAA0062299.14.1e-1169.12pol protein [Cucumis melo var. makuwa][more]
KAA0050041.14.1e-1162.16charged multivesicular body protein 7 isoform X1 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3DMR11.1e-1270.83GPI mannosyltransferase 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A5D3BX223.1e-1263.89Charged multivesicular body protein 7 isoform X1 OS=Cucumis melo var. makuwa OX=... [more]
A0A5A7V9C32.0e-1169.12Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G00450 PE... [more]
A0A5A7U8W22.0e-1162.16Charged multivesicular body protein 7 isoform X1 OS=Cucumis melo var. makuwa OX=... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C029955.1MELO3C029955.1mRNA