MELO3C029915 (gene) Melon (DHL92) v4

Overview
NameMELO3C029915
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationchr03: 3689941 .. 3697170 (+)
RNA-Seq ExpressionMELO3C029915
SyntenyMELO3C029915
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTTCTGTTTCACACATTGCCTCCGAAACTTTTCGCCTTTCGCTCTCTGATTCATTGCATGGCTTTGCTATAAGTGTTGCCGCTTTGATGTCTACTTTGCCGGTTTTCATTTGGACCGAAAATGGCCTTCAATGGACAGAACCTACATCGATAGGGGCATCAGTGGAGCATGATAAGGGTGACTGGTACTTTCTTCAGTTTGTATAAGTTCTATAAAAGTCGATGATGAGGTCCCATTTATGATTACTTTTTTATAATCTATTATATGTTGCTATTTGGTTTTGTTCCTTCTACCCTATGCGATTCTTGTTTGGTGTTCTGTTCTTAGATCAATTTATAAATTTTTATTACAAAATTCTACATTCTTGTTCGGTGAACTTTATACATGTTCTATTGTTATGTGAATCGTTTTTTCTATCAATTTTTTGTGTGAAAATTTGTGCTATTTATAGGTCAATTTACATGGGTACATTCTGTTGTTTTTGTTATGTTCTTATATACGTCTCTACTAGTTTTTTTCTACAACTTGGTAGTCATGCATTTATCATTCAGCCTCTTTGTGCTCTTTGTCATTTTCATGCTCTCTATAAATTTCATTGAACTTCAATGAAGTCAATTTTATGCCTCTGTTGAGTCCCTCTCGCGGCAAATTCCACGTTGTACTGTAATTGTTCGTTTTACCACTTTTTTTTTTAATATCAAATTATAGTCTTATCTCTTTTGACCCCTACTAGTTTGTTCTATGCATACATAGGCTTCACTGCTTGGATGTATCACCTTTGACTGTTCTTTCCCTCTTCATATGTGTTGTCAACTTTGATTTCCACTCTATTTTTTTCTGAGATTTATTGGTTCTTTAATGCTCAAATCTTGTTGTGCATCATTAATTGCTATATTTCCTGTATTATAAATTGTCGCTGCTCTCCCACTGAATTGCATCTTCAATTGTTCTTATTTTCATTTAGGTTCAGTTGTTTGGAACGGCCACCATTATTCTTTTTCACCATTCTTCCTTTGATTGATGTCCTCTGTTGCTCTGTATACATCCATTTTTACAAATAAATTAATCACCTTTTTTTTCTCCAATTTTTTCTTGATTATGTGATGTGTTGAGTTTTGTTGAACTATCTTCTGCAAGAGGGCTTCAACTTTATTTCTACAGCTGTTAAAGAAAAGAATCAAATCAGTTACAAACTAATTTGGTTACAACAGAAAGTTATCTTAAAAAAATTAACAAACTAAATTCTTGTAATCTTGAGAAGAAAAACTACAGAATAAATACAAGGAGTTGTAGTATGAAAATATTCAATTTTTGTCTTGAATCTACTTGTAAGAAAGAATATTGAATAAAAGGATTCTTACCTTTGAAGAGTGAATGTAGGCCAAGAGCTGAACCACTATAAAACACCATCTTGTTCAGTTTTCTCATCCCTTCATCTTCAATCAAGAAACCCCTTTTGAAACCCTATTTTTTCTTTCCCCTTTCTCTCTCAATGAACATGCACAAAAGAAGGAAAGCAATGAATAAAGGAAAATTTAACAGCTTGCAAGGAGTATAAAGGAGAGAGAAAACTAAAGGGTAAAAAGGTAACTTTCTTATCCTTTCACAAGTCTCAAGATAACTTTTACATCAAAGAGAAATTTTCTTTTCCAAGAACTGGTATCAGAGCATAAGATGGAAAGAAAGAAAATGACTACTACGAAGTTTGAAATTGAAAATTTTGATGGGAATAGAGACTTTACCTCGTGGACAAAAAGAATTACTGCAATCTTGGGTTCACAAAAGGCCTTGAAAGCTTCAGAAGACCCTAAAGAACTCCCTGCAACCTTGACCAAATCAGAAAGAGAAACATTGGAAGAGGTAGCTTACAATACACTTATCATGAATATTACTGATAATGTGCTGAGACAAGTAATTGAAGAAACCATTGCTTTTACTAGTTGGGAGAAATTGAAGTCGTTGTATGAAAAGAAAGATCTACCAAATAAGATATTCATAAGGGAGTAGTTATTTTCATTTAAAATGAACCATAACAAAAATCTTGATGAAAATTTAGATGAGTTCAAGAAACTTACCAATGCTTTTAATCAAACTGGAGAGAAATTGGGGGCAGAAAGTGAAGCTGCTATTCTCATTAATTCGATCCACGACACCTACAAAGAAGTAAAGATAGCCCTGAAGTATGGTAGAGAGATAATCACAGTGAACTTAGTGATTACAGCACTTAAAAGCGAGGAACTGGAATTAAAGACAGAAAACAAGACTTCAAATGCAGCAGAGTCCCTATTCCCAAAAGGAAAAAATTCTTTCAGAAAAAACAGCAACAAAAATCAAAGATCAAGTAGAGATAAACCAGCACTGAAATGTTTCATATGTCATAAAGGACATTTTAAAAGAAATTGTCCTGACAGAGGAAAGAACTTCAGAAGAGATGAAAACAGAAGATATAGACCTTATGGTAGAGAAGACTTCAACCGAAACAGAAATTATCAAAGAGAAGATCGAAGAAGAGGAAGAGAACATGGACGTGATCACGGGCCTGTTGGTAATGAAGCTTTTGAATACACTGAGTTGTTAACAACCACCAATAAAAGGACCATGGAAATTAAAACTGAGGAGGAAGACTGGGTCTTAGACTCAGGATGTACCTATCATATGACCTCTAAGAAAAACTGGTTTGTTGACTACAAATCACAAGAGGGAGACTGAGTTTACATGGGAAATAATCAAGACTGTGAGATTATTGGTGTAGGCTCAGTGCTAGACATGTTCCAAAACTAAAGAGAAACCTTATCTCTTTAGGTATGCTTGATGACCTTGGTTGCTTCATTTATATTGAAAGAGGCTTCATGAAGGTGGAAAGACAAGGCAGAGTAATTCTTAATTCAAGAAAGGTGGAAGACTTGTATACTGTAAAAAATGTGATCAAACCAAAGTATGCTCTAATTTCAGAAACTGAGAAAGAAAATGAATTAGAATTATGGCATCAAAGACTTTCACATATTAGTGAAAAAGGGCTTACTGAACTACAAAAACATGGGCTGATTCAAACTAGAGGAGTAAAAAGACTTGGCTTCTGTGAACACTGCATCTTTGGCAAGTCAAAGAGGCTGAAATTCTCTAAAGGAGAACATCACACAAAAGCCACCTTAGACTATGTACATGGTGATCTTTGGGGACCAGCTAGAACTCATTCTTGGGGTGGATCAAGGCACAGAACAGTTGCTTACACCCCTCAACAAAATGGAGTTGCCGAGAGGATGAATAGAACATTGATGGAAAGAGTGAGATGTATGATTTCAGAGGCAAAAATCTCAGAAAATTTTTGGGCTGAAGCTTTAGCTACTGCCACCTATACAGTGACTAGAAGCCTATGTGTTTCTATAGACATGAAGACTCCTGAAGAAAGATGGACTGGAGCTACCCCTAAGCTCTCTAATCTAAAACCTTTTGGGTGTACAACATATGTCTACATCAAACAAAGCAAGATTGAACCTAGAGCTCTTAAATGTATGTTTATTGGCTACCCTGATGGTGTCAAAGACTATAAGCTTTGGGATTTTTCCAAAGAAAGAAGCCTAATAAGCAGAGATGTTGTTTTCAAGGAGAATGAAATCTATATGGAATCTATCAAAGTAATACCAGCTGAAAGAATTTGAATGAGCCTTCTACAAGCCACCAAGTAGAGATTCATTCAAATTTGAAAATCTTAAACCCTAGCAGCAGTGATCAACTTCCAACAGAAGCTCTTCCTAGCTTTTATTCTCAAGAAGAAGAGGAAGAAGAAAATGCAGAAGACTTGACAAATTATAGCTTAACAAGAGATAGAGGGAGAAGAACCATTATACCTCATTCTAGATTTGCAAAAGCAGATTGCAGAGCTAACTCCTCTACAGAAACTATAGAAGATGAGCCTGACAGTTATGAAGATGCTCTATACAGTAAACACCGCAATCAGTGGAAAGAAGCCATGAATGATGAACTTAATTCACTCTACAAGAATGATACTTGGGAATTAGTAGAAAAGCCACATAAAAAAAGTATCATTCCTTGTAAATGGGTTTTCAAGAAGAAGATGATTGATGATTTGAATGACAAGGTAAAAATTAAGGCAAGACTAGTAGCTAAAGGCTTCAAGCAAAAGGAGGGTGTAGACTATAATGAGATTTTTTCCCCTGTTGTAAAGCACACTTGTATAAGAATCCTACTGACTATTGTAGCATGTGAAAATCTTAAGCTAGAACAGCTAGATGTTACTACTGCTTTCCTACATGGAAGCTTAGAGGAAGAAATCTTCATGGAGCAGCCTAAGGGTTTTGAAGTAAAAGGCAAAAAGGAGCTGGTGTGTAAACTAAATAGGTTTTTATATGGCCTAAAACAGTCTCCAAGGTGTTGGTACAAACATTTTGATGACTATATCAGCCTGATAGGATTTATTAGAAGTCTATATGACCCATGTGTCTACTACAAGAAGCTCACTGAAGGTGACTACATCTATATTTTACTCTATGTTGATGATATGTTACTAGCAGGGAGAGATCCAACCAAGTTAAAAGAGATCAAAGCTCAACTCAGTGCTGAATTTGATATGAAGGACCTAGGAGCAGCTAAGAAAATCCTAGGAATTGAAATCTTGAGAGATAGAAATAACAATGAGTTATCTCTAACTCAGAAGACCTACACCAACAAGGTACTTTATAGATTCAACATGGCTAACTCAAAGGTAGTTTCTACACCTTTAGCTCAACACATTAAAATATGAGCAAGAGATTCACCTAAAGATCCAACTGATAGACAAGCAATGAGTTATGTACCGTACTCTAAGGCTACAGGCAGCCTAATGTATCTAATGGTCTGTACTAGGCTAGATCTAGCTCACAGTTCAAGTCTTGTCAGCCGGTATATGGGAAACCCAAGCAAGATTCATTGGGAAGCAACTAAATGGGTTTTCAGGTACCTAGTTGGAACTGAAAATAGAGGATTGCTTTATAAACCCCCTAAAGATTCTAAACTACGAGTTAGAGGCTTTGTGGATGCGGATTTTGCTGGAGATCCATATAAAAGAAGATCACTAACTGGCTTTGCCTTCACTTTGGGAGAAAATCTTATCAGTTGGAAATCAAATTTACAATCAGTAGTTGCCTTATCAACTACTGAAGCAAAATTTATAGTTGTTTCTGAAGCTGTGAAAGAAGCTATGTGGCTAAGGGGAATAGTCTCAGAACTAGGTTACCAACAAGAAGCTATAGAACTAATGTGTGACAACCAGAGTGTAATTCACCTCACAAAGAATCAGCAGTACCATGACAGAACTAAACATATAGATGTAAAATTACACTTTGTTCGGGATATCATTGAAAAAGGAGTGGTGAAAATCCTAAAAGTTAAATCTGAAGAAAATGCTGCTGATTTCCTAACAAAAGCCCTACCAAAATCTAAGTTTGAACAATGTTTAAATCTACTAAATGTGGTGGATTTAAATAAAGTTGAGTAAATACCTTGCTTTAAGCAGAAAACAATTCAAGAGGGACATTTGTTGAGTTTTGTTGAACTATCTTCTGCAAGAGGGCTTCAACTTTATTTCTACAGCTATTAAAGAAAAGAATCAAATCAGTTACAAACTAATTTTGTTACAACAGAAAGTTATCTTCAACAAATTAACAAACTAAAGTCTTGTAATCTTGAGAAGAAAAACACAGAATAAATACAAGGAGTTGTAGTATGAAAATATTCAATTTTTGTCTTGAATCTACTTGTAAGAAAGAATATTGAATAAAAGGATTCTTACCTTTGAAGAGTGGATGTAGGCCAAGAGCTGAACCACTATAAAACACCATCTTGTTCACTTTTTTCATCCCTTCATCTTCAATCAAGAAACCCCTTTTGAAACCCTATTTTTTCTTTCCCCTTTCTCTCTCGATGAACATGCACAAAAGAAGGAAAAAAATGAATAAAGGGAAATTTAACAGCTTGCAAGGAGTATAAAGGAGAGAGAAAACTAAAGGGTAAAAAGGTAACTTTCTTATCCTTTCACAAGTCTCAAGATAACTTTTACATCAAAGAGAAATTTTCTTTTCCAAGATGATGTTGATCCTAAATCTTTTTATGAAATTTATGTATACAAGGTTTATAACTTTCATTCTATTTGCTAGCTACTGTCTCAATTCAATGCAATTTACATACTTCCTTCCTAAGGAAATTTTTCTTTCTACTTCTTTATGTGAAATGCATCACTTATCTTTACAAATGTTCTTTCTTCCTGTACCTTTTAGGCTACCGTCTCATTTTATTTTTTAATGCATTTTTTAAATACAATTTTTCATTTGCAAACACATATGTCATTGTTTCTTCTAACATCCATTCTTAGGAAATAAAGTTGTATTTCTTCATATTATTTGCGCCGCAGCCAATTGCATACTTTATCTCATACATGATTATGAAAATGAAGTTCAACTACAATAACAAAGTTAATTCCTCTAAGGCTTCCCCATTTCTCTAATTTATGTCTTTGTTTGAGTCTTATGTTGGTCATTTGGTTTTCTATTATATGCATTGTGTCTAGTTTGGTAAAGAAAATGGTACGTCTCCCAATCTTTTCTTCTCCTTCTTATTTAGGCATTTATGTGGTATGAGCTAACTTAGTTTGTTTTTTTCGTCTTCATATTTTTAGGATTCCCTCGCTAGGTAACAAAGTGGCCACCCCCATATGCTATTTTCCATTTTCTAAGTTGTATGCGTTTAGAGCAACCACCTAATGGCGTTTTGTTTTTTTCCTTTTGGTCACTAACAATGAACTTGTTAATGATGTAATTTTTTGGACTTTCTATATATTTCTTTTCAATAAATTTGTTACTTATGTATTTCTTATTATTGTTTCACCTGTAACGTCATCTTTACAAATAGAGTACTCGCACTTCATCTTATGTTCATGTTGCTTAGACTTAATTTAATTAAGTAACGGAATTAAGTTGTCGCATGCATAGACACTATTCATAGTAGTCTTCCTTTCATTTAATTTATTTTCCATGACTTACATTTACCTCCAAAAAGAAAAAAATATATGTTTTCCAAACTTCCAATTTCGGCTTTTTCCAAAGACAACATTTAAAATGTTATCGTTACTATCATAACTAATCATATGACCATCATTTTAATTTACAAAATGTGTGCCTTTTCATTCTCCAAAGTTAAAGTTGAAAACTAAGAAAAAGGCATCATCGTATTTA

mRNA sequence

ATGGTTTCTGTTTCACACATTGCCTCCGAAACTTTTCGCCTTTCGCTCTCTGATTCATTGCATGGCTTTGCTATAAGTGTTGCCGCTTTGATGTCTACTTTGCCGGTTTTCATTTGGACCGAAAATGGCCTTCAATGGACAGAACCTACATCGATAGGGGCATCAGTGGAGCATGATAAGGAGCATAAGATGGAAAGAAAGAAAATGACTACTACGAAGTTTGAAATTGAAAATTTTGATGGGAATAGAGACTTTACCTCGTGGACAAAAAGAATTACTGCAATCTTGGGTTCACAAAAGGCCTTGAAAGCTTCAGAAGACCCTAAAGAACTCCCTGCAACCTTGACCAAATCAGAAAGAGAAACATTGGAAGAGGTAGCTTACAATACACTTATCATGAATATTACTGATAATGTGCTGAGACAAGACATTTTAAAAGAAATTGTCCTGACAGAGGAAAGAACTTCAGAAGAGATGAAAACAGAAGATATAGACCTTATGGTAGAGAAGACTTCAACCGAAACAGAAATTATCAAAGAGAAGATCGAAGAAGAGGAAGAGAACATGGACGTGATCACGGGCCTGTTGGATTCCCTCGCTAGGTAACAAAGTGGCCACCCCCATATGCTATTTTCCATTTTCTAAGTTGTATGCGTTTAGAGCAACCACCTAATGGCGTTTTGTTTTTTTCCTTTTGGTCACTAACAATGAACTTGTTAATGATGTAATTTTTTGGACTTTCTATATATTTCTTTTCAATAAATTTGTTACTTATGTATTTCTTATTATTGTTTCACCTGTAACGTCATCTTTACAAATAGAGTACTCGCACTTCATCTTATGTTCATGTTGCTTAGACTTAATTTAATTAAGTAACGGAATTAAGTTGTCGCATGCATAGACACTATTCATAGTAGTCTTCCTTTCATTTAATTTATTTTCCATGACTTACATTTACCTCCAAAAAGAAAAAAATATATGTTTTCCAAACTTCCAATTTCGGCTTTTTCCAAAGACAACATTTAAAATGTTATCGTTACTATCATAACTAATCATATGACCATCATTTTAATTTACAAAATGTGTGCCTTTTCATTCTCCAAAGTTAAAGTTGAAAACTAAGAAAAAGGCATCATCGTATTTA

Coding sequence (CDS)

ATGGTTTCTGTTTCACACATTGCCTCCGAAACTTTTCGCCTTTCGCTCTCTGATTCATTGCATGGCTTTGCTATAAGTGTTGCCGCTTTGATGTCTACTTTGCCGGTTTTCATTTGGACCGAAAATGGCCTTCAATGGACAGAACCTACATCGATAGGGGCATCAGTGGAGCATGATAAGGAGCATAAGATGGAAAGAAAGAAAATGACTACTACGAAGTTTGAAATTGAAAATTTTGATGGGAATAGAGACTTTACCTCGTGGACAAAAAGAATTACTGCAATCTTGGGTTCACAAAAGGCCTTGAAAGCTTCAGAAGACCCTAAAGAACTCCCTGCAACCTTGACCAAATCAGAAAGAGAAACATTGGAAGAGGTAGCTTACAATACACTTATCATGAATATTACTGATAATGTGCTGAGACAAGACATTTTAAAAGAAATTGTCCTGACAGAGGAAAGAACTTCAGAAGAGATGAAAACAGAAGATATAGACCTTATGGTAGAGAAGACTTCAACCGAAACAGAAATTATCAAAGAGAAGATCGAAGAAGAGGAAGAGAACATGGACGTGATCACGGGCCTGTTGGATTCCCTCGCTAGGTAA

Protein sequence

MVSVSHIASETFRLSLSDSLHGFAISVAALMSTLPVFIWTENGLQWTEPTSIGASVEHDKEHKMERKKMTTTKFEIENFDGNRDFTSWTKRITAILGSQKALKASEDPKELPATLTKSERETLEEVAYNTLIMNITDNVLRQDILKEIVLTEERTSEEMKTEDIDLMVEKTSTETEIIKEKIEEEEENMDVITGLLDSLAR
Homology
[Close]
BLAST of MELO3C029915 vs. NCBI nr
Match: KAA0054988.1 (hypothetical protein E6C27_scaffold43052G001360 [Cucumis melo var. makuwa])

HSP 1 Score: 147.1 bits (370), Expect = 1.6e-31
Identity = 78/85 (91.76%), Postives = 79/85 (92.94%), Query Frame = 0 

Query: 69  MTTTKFEIENFDGNRDFTSWTKRITAILGSQKALKASEDPKELPATLTKSERETLEEVAY 128
           MTTTKFEIENFDGNRDFTSWTKRITAILGSQKALKASEDPKELPATLTKSERETLEEVAY
Sbjct: 1   MTTTKFEIENFDGNRDFTSWTKRITAILGSQKALKASEDPKELPATLTKSERETLEEVAY 60

Query: 129 NTLIMNITDNVLRQDILKEIVLTEE 154
           NTLIMNITDNVLRQ I + I  T E
Sbjct: 61  NTLIMNITDNVLRQVIEETIAFTNE 85

[Close]
BLAST of MELO3C029915 vs. NCBI nr
Match: KAA0051442.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK22211.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 129.8 bits (325), Expect = 2.6e-26
Identity = 85/139 (61.15%), Postives = 99/139 (71.22%), Query Frame = 0 

Query: 69  MTTTKFEIENFDGNRDFTSWTKRITAILGSQKALKASEDPKELPATLTKSERETLEEVAY 128
           MTTTKFEIE FDGN DFT WTKRITAILGSQKALKA EDPKELPATLTKSERETLEEVAY
Sbjct: 1   MTTTKFEIEKFDGNGDFTLWTKRITAILGSQKALKALEDPKELPATLTKSERETLEEVAY 60

Query: 129 NTLIMNITDNVLRQDILKEIVLTEERTSEEMKTEDIDLMVEKTSTETEIIKEKI------ 188
           +TLIMNITDNVLRQ +++E   T   T E++K+    L  +K       IKEK+      
Sbjct: 61  STLIMNITDNVLRQ-VIEE--TTAFATWEKLKS----LYEKKDLPNKMFIKEKLFSFKKN 120

Query: 189 --EEEEENMDVITGLLDSL 200
             +  +EN+D    L ++L
Sbjct: 121 QNKNLDENLDEFKKLTNAL 132

[Close]
BLAST of MELO3C029915 vs. NCBI nr
Match: KAA0033502.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK26827.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 121.7 bits (304), Expect = 7.2e-24
Identity = 75/129 (58.14%), Postives = 91/129 (70.54%), Query Frame = 0 

Query: 69  MTTTKFEIENFDGNRDFTSWTKRITAILGSQKALKASEDPKELPATLTKSERETLEEVAY 128
           MTTTKFEIE FDGN DFTSWT+RIT I GSQK LKA EDPKELPATLTKSERETLEEVAY
Sbjct: 1   MTTTKFEIEKFDGNGDFTSWTRRITTIFGSQKTLKALEDPKELPATLTKSERETLEEVAY 60

Query: 129 NTLIMNITDNVLRQDILKE---IVLTEERTSEEMKT------EDIDLMVEKTSTETEIIK 188
            TL+MNITDN+LRQ    E   ++ +   T +E+KT      E I +    T+ +++ ++
Sbjct: 61  GTLVMNITDNMLRQGAKSEAAILINSIHETYKEVKTALKYGRETITVNSVITTLKSKELE 120

[Close]
BLAST of MELO3C029915 vs. NCBI nr
Match: TYK27723.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 120.2 bits (300), Expect = 2.1e-23
Identity = 81/140 (57.86%), Postives = 94/140 (67.14%), Query Frame = 0 

Query: 69  MTTTKFEIENFDGNRDFTSWTKRITAILGSQKALKASEDPKELPATLTKSERETLEEVAY 128
           MTTTKFEIE FDGN DFT  TKRITA LGSQKALKA EDPKELPATLTKSERETLEEVAY
Sbjct: 1   MTTTKFEIEKFDGNGDFTLLTKRITASLGSQKALKALEDPKELPATLTKSERETLEEVAY 60

Query: 129 NTLIMNITDNVLRQDILKEIVLTEERTSEEMKTEDIDLMVEKTSTETEI-IKEKI----- 188
           +TLIMNITDNVLRQ I        E T+     E +  + EK     ++ I+EK+     
Sbjct: 61  STLIMNITDNVLRQVI--------EETTGFATWEILKSLYEKKDLSNKMFIREKLFSFKM 120

Query: 189 ---EEEEENMDVITGLLDSL 200
              +  +EN+D    L ++L
Sbjct: 121 NQNKNLDENLDEFKKLTNAL 132

[Close]
BLAST of MELO3C029915 vs. NCBI nr
Match: KAA0042267.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 118.2 bits (295), Expect = 8.0e-23
Identity = 67/102 (65.69%), Postives = 75/102 (73.53%), Query Frame = 0 

Query: 69  MTTTKFEIENFDGNRDFTSWTKRITAILGSQKALKASEDPKELPATLTKSERETLEEVAY 128
           MTT KFEIE FDGN D T WTKRIT ILGSQKALKA +DPKELPATLTKSERET+E VAY
Sbjct: 1   MTTMKFEIEKFDGNGDCTLWTKRITTILGSQKALKALKDPKELPATLTKSERETMENVAY 60

Query: 129 NTLIMNITDNVLRQ--------DILKEIVLTEERTSEEMKTE 163
            TL+MNITDNVLRQ        D  K++     +T E++  E
Sbjct: 61  GTLVMNITDNVLRQNKNLDENLDEFKKLTNALNQTGEKLGAE 102

[Close]
BLAST of MELO3C029915 vs. ExPASy TrEMBL
Match: A0A5A7UJ23 (Integrase catalytic domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43052G001360 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 7.7e-32
Identity = 78/85 (91.76%), Postives = 79/85 (92.94%), Query Frame = 0 

Query: 69  MTTTKFEIENFDGNRDFTSWTKRITAILGSQKALKASEDPKELPATLTKSERETLEEVAY 128
           MTTTKFEIENFDGNRDFTSWTKRITAILGSQKALKASEDPKELPATLTKSERETLEEVAY
Sbjct: 1   MTTTKFEIENFDGNRDFTSWTKRITAILGSQKALKASEDPKELPATLTKSERETLEEVAY 60

Query: 129 NTLIMNITDNVLRQDILKEIVLTEE 154
           NTLIMNITDNVLRQ I + I  T E
Sbjct: 61  NTLIMNITDNVLRQVIEETIAFTNE 85

[Close]
BLAST of MELO3C029915 vs. ExPASy TrEMBL
Match: A0A5A7U6R2 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold333G00930 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 1.3e-26
Identity = 85/139 (61.15%), Postives = 99/139 (71.22%), Query Frame = 0 

Query: 69  MTTTKFEIENFDGNRDFTSWTKRITAILGSQKALKASEDPKELPATLTKSERETLEEVAY 128
           MTTTKFEIE FDGN DFT WTKRITAILGSQKALKA EDPKELPATLTKSERETLEEVAY
Sbjct: 1   MTTTKFEIEKFDGNGDFTLWTKRITAILGSQKALKALEDPKELPATLTKSERETLEEVAY 60

Query: 129 NTLIMNITDNVLRQDILKEIVLTEERTSEEMKTEDIDLMVEKTSTETEIIKEKI------ 188
           +TLIMNITDNVLRQ +++E   T   T E++K+    L  +K       IKEK+      
Sbjct: 61  STLIMNITDNVLRQ-VIEE--TTAFATWEKLKS----LYEKKDLPNKMFIKEKLFSFKKN 120

Query: 189 --EEEEENMDVITGLLDSL 200
             +  +EN+D    L ++L
Sbjct: 121 QNKNLDENLDEFKKLTNAL 132

[Close]
BLAST of MELO3C029915 vs. ExPASy TrEMBL
Match: A0A5D3DST2 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold260G00160 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 3.5e-24
Identity = 75/129 (58.14%), Postives = 91/129 (70.54%), Query Frame = 0 

Query: 69  MTTTKFEIENFDGNRDFTSWTKRITAILGSQKALKASEDPKELPATLTKSERETLEEVAY 128
           MTTTKFEIE FDGN DFTSWT+RIT I GSQK LKA EDPKELPATLTKSERETLEEVAY
Sbjct: 1   MTTTKFEIEKFDGNGDFTSWTRRITTIFGSQKTLKALEDPKELPATLTKSERETLEEVAY 60

Query: 129 NTLIMNITDNVLRQDILKE---IVLTEERTSEEMKT------EDIDLMVEKTSTETEIIK 188
            TL+MNITDN+LRQ    E   ++ +   T +E+KT      E I +    T+ +++ ++
Sbjct: 61  GTLVMNITDNMLRQGAKSEAAILINSIHETYKEVKTALKYGRETITVNSVITTLKSKELE 120

[Close]
BLAST of MELO3C029915 vs. ExPASy TrEMBL
Match: A0A5D3DVM0 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold225G00690 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.0e-23
Identity = 81/140 (57.86%), Postives = 94/140 (67.14%), Query Frame = 0 

Query: 69  MTTTKFEIENFDGNRDFTSWTKRITAILGSQKALKASEDPKELPATLTKSERETLEEVAY 128
           MTTTKFEIE FDGN DFT  TKRITA LGSQKALKA EDPKELPATLTKSERETLEEVAY
Sbjct: 1   MTTTKFEIEKFDGNGDFTLLTKRITASLGSQKALKALEDPKELPATLTKSERETLEEVAY 60

Query: 129 NTLIMNITDNVLRQDILKEIVLTEERTSEEMKTEDIDLMVEKTSTETEI-IKEKI----- 188
           +TLIMNITDNVLRQ I        E T+     E +  + EK     ++ I+EK+     
Sbjct: 61  STLIMNITDNVLRQVI--------EETTGFATWEILKSLYEKKDLSNKMFIREKLFSFKM 120

Query: 189 ---EEEEENMDVITGLLDSL 200
              +  +EN+D    L ++L
Sbjct: 121 NQNKNLDENLDEFKKLTNAL 132

[Close]
BLAST of MELO3C029915 vs. ExPASy TrEMBL
Match: A0A5A7TKQ1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold824G00510 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 3.8e-23
Identity = 67/102 (65.69%), Postives = 75/102 (73.53%), Query Frame = 0 

Query: 69  MTTTKFEIENFDGNRDFTSWTKRITAILGSQKALKASEDPKELPATLTKSERETLEEVAY 128
           MTT KFEIE FDGN D T WTKRIT ILGSQKALKA +DPKELPATLTKSERET+E VAY
Sbjct: 1   MTTMKFEIEKFDGNGDCTLWTKRITTILGSQKALKALKDPKELPATLTKSERETMENVAY 60

Query: 129 NTLIMNITDNVLRQ--------DILKEIVLTEERTSEEMKTE 163
            TL+MNITDNVLRQ        D  K++     +T E++  E
Sbjct: 61  GTLVMNITDNVLRQNKNLDENLDEFKKLTNALNQTGEKLGAE 102

The following BLAST results are available for this feature:
BLAST of MELO3C029915 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0054988.11.6e-3191.76hypothetical protein E6C27_scaffold43052G001360 [Cucumis melo var. makuwa][more]
KAA0051442.12.6e-2661.15Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
KAA0033502.17.2e-2458.14Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
TYK27723.12.1e-2357.86Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
KAA0042267.18.0e-2365.69Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
BLAST of MELO3C029915 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C029915 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UJ237.7e-3291.76Integrase catalytic domain-containing protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5A7U6R21.3e-2661.15Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A5D3DST23.5e-2458.14Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A5D3DVM01.0e-2357.86Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A5A7TKQ13.8e-2365.69Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
BLAST of MELO3C029915 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 168..188

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C029915.1MELO3C029915.1mRNA