MELO3C029914 (gene) Melon (DHL92) v4

Overview
NameMELO3C029914
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionCCHC-type domain-containing protein
Locationchr03: 3659491 .. 3659760 (+)
RNA-Seq ExpressionMELO3C029914
SyntenyMELO3C029914
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGACTTGTGCCATAGCCTACGAATCTAATGGTCATTCAAATAGAGAAGCCGTCATGCTTCTAATTAATGAATTTAGTGGAAGTCTCAAATTGTGGTGGGATCATGCCCTAAGTACTGAACAAAAAGAAGCAATAAAAAGACATAAGACAAAGGTTAGAAGGATAATTAAAGTTGAAGAAGGAACTTCAACAATTCAAGAGGTAGAAGAAGAAATAGAGAACGCTGTAGAAACCCTTCTTGATACAATTAACCTGCACTTCGGCTAG

mRNA sequence

ATGTTGACTTGTGCCATAGCCTACGAATCTAATGGTCATTCAAATAGAGAAGCCGTCATGCTTCTAATTAATGAATTTAGTGGAAGTCTCAAATTGTGGTGGGATCATGCCCTAAGTACTGAACAAAAAGAAGCAATAAAAAGACATAAGACAAAGGTTAGAAGGATAATTAAAGTTGAAGAAGGAACTTCAACAATTCAAGAGGTAGAAGAAGAAATAGAGAACGCTGTAGAAACCCTTCTTGATACAATTAACCTGCACTTCGGCTAG

Coding sequence (CDS)

ATGTTGACTTGTGCCATAGCCTACGAATCTAATGGTCATTCAAATAGAGAAGCCGTCATGCTTCTAATTAATGAATTTAGTGGAAGTCTCAAATTGTGGTGGGATCATGCCCTAAGTACTGAACAAAAAGAAGCAATAAAAAGACATAAGACAAAGGTTAGAAGGATAATTAAAGTTGAAGAAGGAACTTCAACAATTCAAGAGGTAGAAGAAGAAATAGAGAACGCTGTAGAAACCCTTCTTGATACAATTAACCTGCACTTCGGCTAG

Protein sequence

MLTCAIAYESNGHSNREAVMLLINEFSGSLKLWWDHALSTEQKEAIKRHKTKVRRIIKVEEGTSTIQEVEEEIENAVETLLDTINLHFG
Homology
BLAST of MELO3C029914 vs. NCBI nr
Match: KAA0056258.1 (hypothetical protein E6C27_scaffold226G00260 [Cucumis melo var. makuwa])

HSP 1 Score: 144.8 bits (364), Expect = 3.5e-31
Identity = 74/83 (89.16%), Postives = 75/83 (90.36%), Query Frame = 0

Query: 7   AYESNGHSNREAVMLLINEFSGSLKLWWDHALSTEQKEAIKRHKTKVRRIIKVEEGTSTI 66
           AYESNGHSNREA MLLIN FSGSLKLWWDHALSTE+KEAIKR KTKVRRIIKVEEG ST 
Sbjct: 266 AYESNGHSNREAAMLLINGFSGSLKLWWDHALSTERKEAIKRQKTKVRRIIKVEEGASTT 325

Query: 67  QEVEEEIENAVETLLDTINLHFG 90
           QEVEEEIEN VETLL  INLHFG
Sbjct: 326 QEVEEEIENVVETLLYAINLHFG 348

BLAST of MELO3C029914 vs. NCBI nr
Match: CAF2057616.1 (unnamed protein product, partial [Brassica napus] >VDD61511.1 unnamed protein product, partial [Brassica oleracea])

HSP 1 Score: 59.7 bits (143), Expect = 1.5e-05
Identity = 35/85 (41.18%), Postives = 54/85 (63.53%), Query Frame = 0

Query: 5  AIAYESNGHSNREAVMLLINEFSGSLKLWWDHALSTEQKEAIKRH-KTKVRRIIKVEEGT 64
          A+AY++ G+ ++++ +LLI  F+G+L+ WWD++L    +EAI  H  TK      VE   
Sbjct: 11 AMAYKAKGNDDKQSCVLLIVGFNGALRYWWDNSLEYVTREAIINHTDTKT-----VENNE 70

Query: 65 STIQEVEEEIENAVETLLDTINLHF 89
            I+EV  EI+NAVE L+  I +HF
Sbjct: 71 GEIKEV--EIQNAVEVLIHIITMHF 88

BLAST of MELO3C029914 vs. NCBI nr
Match: VDD60336.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 58.9 bits (141), Expect = 2.5e-05
Identity = 33/85 (38.82%), Postives = 57/85 (67.06%), Query Frame = 0

Query: 5  AIAYESNGHSNREAVMLLINEFSGSLKLWWDHALSTEQKEAIKRHKTKVRRIIKVEEGTS 64
          A+AY++ G+ ++++ +LLI  F+G+L+ WWD++L    +++I  H T+ R I       +
Sbjct: 11 AMAYKAKGNDDKQSCVLLIVGFNGALRYWWDNSLDNVTRKSIINH-TETRTI------EN 70

Query: 65 TIQEVEE-EIENAVETLLDTINLHF 89
          T  E+E+ EI+NAVE L+ TI +HF
Sbjct: 71 TEGELEQVEIQNAVEVLIHTITMHF 88

BLAST of MELO3C029914 vs. NCBI nr
Match: CAF1934665.1 (unnamed protein product [Brassica napus])

HSP 1 Score: 58.9 bits (141), Expect = 2.5e-05
Identity = 32/84 (38.10%), Postives = 55/84 (65.48%), Query Frame = 0

Query: 5  AIAYESNGHSNREAVMLLINEFSGSLKLWWDHALSTEQKEAIKRHKTKVRRIIKVEEGTS 64
          A+AY++ G+ ++++ +LLI  F+G+LK WWD++L    +E+I  H T+ R    +E    
Sbjct: 11 AMAYKAKGNDDKQSCVLLIVGFNGALKYWWDNSLDNVTRESIINH-TETR---TMENAEG 70

Query: 65 TIQEVEEEIENAVETLLDTINLHF 89
           +++V  E +NAVE L+ TI +HF
Sbjct: 71 ELEQV--ETQNAVEVLIHTITMHF 88

BLAST of MELO3C029914 vs. NCBI nr
Match: CAF1934450.1 (unnamed protein product, partial [Brassica napus])

HSP 1 Score: 58.5 bits (140), Expect = 3.3e-05
Identity = 32/85 (37.65%), Postives = 57/85 (67.06%), Query Frame = 0

Query: 5  AIAYESNGHSNREAVMLLINEFSGSLKLWWDHALSTEQKEAIKRHKTKVRRIIKVEEGTS 64
          A+AY++ G+ ++++ +LL+  F+G+L+ WWD++L +  +E+I  H T+ R I       +
Sbjct: 11 AMAYKAKGNDDKQSCVLLVVGFNGALRYWWDNSLDSVTRESIINH-TETRTI------EN 70

Query: 65 TIQEVEE-EIENAVETLLDTINLHF 89
          T  E+E+ E +NAVE L+ TI +HF
Sbjct: 71 TEGELEQVETQNAVEVLIHTITMHF 88

BLAST of MELO3C029914 vs. ExPASy TrEMBL
Match: A0A5A7UMD8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold226G00260 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.7e-31
Identity = 74/83 (89.16%), Postives = 75/83 (90.36%), Query Frame = 0

Query: 7   AYESNGHSNREAVMLLINEFSGSLKLWWDHALSTEQKEAIKRHKTKVRRIIKVEEGTSTI 66
           AYESNGHSNREA MLLIN FSGSLKLWWDHALSTE+KEAIKR KTKVRRIIKVEEG ST 
Sbjct: 266 AYESNGHSNREAAMLLINGFSGSLKLWWDHALSTERKEAIKRQKTKVRRIIKVEEGASTT 325

Query: 67  QEVEEEIENAVETLLDTINLHFG 90
           QEVEEEIEN VETLL  INLHFG
Sbjct: 326 QEVEEEIENVVETLLYAINLHFG 348

BLAST of MELO3C029914 vs. ExPASy TrEMBL
Match: A0A3P6GPS9 (Uncharacterized protein (Fragment) OS=Brassica oleracea OX=3712 GN=BOLC6T36964H PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 7.2e-06
Identity = 35/85 (41.18%), Postives = 54/85 (63.53%), Query Frame = 0

Query: 5  AIAYESNGHSNREAVMLLINEFSGSLKLWWDHALSTEQKEAIKRH-KTKVRRIIKVEEGT 64
          A+AY++ G+ ++++ +LLI  F+G+L+ WWD++L    +EAI  H  TK      VE   
Sbjct: 11 AMAYKAKGNDDKQSCVLLIVGFNGALRYWWDNSLEYVTREAIINHTDTKT-----VENNE 70

Query: 65 STIQEVEEEIENAVETLLDTINLHF 89
            I+EV  EI+NAVE L+  I +HF
Sbjct: 71 GEIKEV--EIQNAVEVLIHIITMHF 88

BLAST of MELO3C029914 vs. ExPASy TrEMBL
Match: A0A3P6GKI5 (Uncharacterized protein OS=Brassica oleracea OX=3712 GN=BOLC6T35789H PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.2e-05
Identity = 33/85 (38.82%), Postives = 57/85 (67.06%), Query Frame = 0

Query: 5  AIAYESNGHSNREAVMLLINEFSGSLKLWWDHALSTEQKEAIKRHKTKVRRIIKVEEGTS 64
          A+AY++ G+ ++++ +LLI  F+G+L+ WWD++L    +++I  H T+ R I       +
Sbjct: 11 AMAYKAKGNDDKQSCVLLIVGFNGALRYWWDNSLDNVTRKSIINH-TETRTI------EN 70

Query: 65 TIQEVEE-EIENAVETLLDTINLHF 89
          T  E+E+ EI+NAVE L+ TI +HF
Sbjct: 71 TEGELEQVEIQNAVEVLIHTITMHF 88

BLAST of MELO3C029914 vs. ExPASy TrEMBL
Match: A0A3P6F8L4 (Uncharacterized protein OS=Brassica oleracea OX=3712 GN=BOLC5T31321H PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 4.7e-05
Identity = 33/89 (37.08%), Postives = 56/89 (62.92%), Query Frame = 0

Query: 1  MLTCAIAYESNGHSNREAVMLLINEFSGSLKLWWDHALSTEQKEAIKRHKTKVRRIIKVE 60
          M   A+AY++ G+ ++++ +LLI  F+G+L+ WWD++L    +E+I  H     R I+  
Sbjct: 7  MRMAAMAYKAKGNDDKQSCVLLIVGFNGALRYWWDNSLDNVTRESIINHTES--RTIENT 66

Query: 61 EGTSTIQEVEE-EIENAVETLLDTINLHF 89
          EG     E+E+ E +NAV+ L+ TI +HF
Sbjct: 67 EG-----ELEQVETQNAVKVLIHTITMHF 88

BLAST of MELO3C029914 vs. ExPASy TrEMBL
Match: V4NUW6 (CCHC-type domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10023048mg PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 6.1e-05
Identity = 33/75 (44.00%), Postives = 46/75 (61.33%), Query Frame = 0

Query: 14  SNREAVMLLINEFSGSLKLWWDHALSTEQKEAIKRHKTKVRRIIKVEEGTSTIQEVEEEI 73
           +++EA +LL+  FSGSLK WWD+AL T Q+ +I  H  K    I  E+G      +E E 
Sbjct: 41  TDKEACVLLVAGFSGSLKYWWDNALDTNQQNSIINHVEK----IHTEDGF----VIETEK 100

Query: 74  ENAVETLLDTINLHF 89
            NA+E L+ TI +HF
Sbjct: 101 SNAIEVLVHTILMHF 107

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0056258.13.5e-3189.16hypothetical protein E6C27_scaffold226G00260 [Cucumis melo var. makuwa][more]
CAF2057616.11.5e-0541.18unnamed protein product, partial [Brassica napus] >VDD61511.1 unnamed protein pr... [more]
VDD60336.12.5e-0538.82unnamed protein product [Brassica oleracea][more]
CAF1934665.12.5e-0538.10unnamed protein product [Brassica napus][more]
CAF1934450.13.3e-0537.65unnamed protein product, partial [Brassica napus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7UMD81.7e-3189.16Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A3P6GPS97.2e-0641.18Uncharacterized protein (Fragment) OS=Brassica oleracea OX=3712 GN=BOLC6T36964H ... [more]
A0A3P6GKI51.2e-0538.82Uncharacterized protein OS=Brassica oleracea OX=3712 GN=BOLC6T35789H PE=4 SV=1[more]
A0A3P6F8L44.7e-0537.08Uncharacterized protein OS=Brassica oleracea OX=3712 GN=BOLC5T31321H PE=4 SV=1[more]
V4NUW66.1e-0544.00CCHC-type domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 59..86

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C029914.1MELO3C029914.1mRNA